Wall clock time and date at job start Mon Mar 30 2020 06:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00112 * 2 1 4 4 H 1.48503 * 109.47255 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46892 * 299.99195 * 3 2 1 6 6 H 1.48492 * 109.47505 * 59.99564 * 3 2 1 7 7 C 1.37877 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99996 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47048 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47208 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47278 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00006 * 359.97438 * 12 11 10 14 14 O 1.34236 * 120.00349 * 180.02562 * 12 11 10 15 15 C 1.45190 * 117.00184 * 180.02562 * 14 12 11 16 16 C 1.50707 * 109.47131 * 179.97438 * 15 14 12 17 17 C 1.38238 * 119.99792 * 90.00017 * 16 15 14 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00179 * 269.97954 * 16 15 14 22 22 H 0.97002 * 119.99800 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46754 * 60.00174 * 9 7 2 24 24 H 1.08999 * 109.47248 * 299.99549 * 9 7 2 25 25 H 1.09001 * 109.47197 * 59.99732 * 10 9 7 26 26 H 1.09004 * 109.47466 * 300.00250 * 10 9 7 27 27 H 1.09009 * 109.47115 * 60.00055 * 11 10 9 28 28 H 1.08999 * 109.47169 * 299.99983 * 11 10 9 29 29 H 1.09005 * 109.47695 * 60.00175 * 15 14 12 30 30 H 1.09000 * 109.47342 * 299.99412 * 15 14 12 31 31 H 1.08005 * 120.00068 * 359.97438 * 17 16 15 32 32 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 34 34 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 35 35 H 1.07999 * 119.99968 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2127 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4594 -6.1325 0.0005 13 8 3.6473 -5.9118 -0.0008 14 8 2.0119 -7.3981 0.0004 15 6 3.0119 -8.4508 0.0004 16 6 2.3277 -9.7936 0.0009 17 6 2.0136 -10.4097 -1.1961 18 6 1.3865 -11.6416 -1.1956 19 6 1.0740 -12.2577 0.0018 20 6 1.3833 -11.6392 1.1987 21 6 2.0146 -10.4094 1.1983 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8718 -3.6043 0.8905 26 1 2.8718 -3.6044 -0.8894 27 1 0.8531 -5.0451 -0.8886 28 1 0.8538 -5.0445 0.8914 29 1 3.6347 -8.3605 0.8904 30 1 3.6347 -8.3604 -0.8896 31 1 2.2581 -9.9285 -2.1316 32 1 1.1407 -12.1228 -2.1307 33 1 0.5845 -13.2204 0.0021 34 1 1.1353 -12.1185 2.1342 35 1 2.2607 -9.9284 2.1334 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846761575.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:42 Heat of formation + Delta-G solvation = -84.445642 kcal Electronic energy + Delta-G solvation = -16551.929624 eV Core-core repulsion = 13707.150593 eV Total energy + Delta-G solvation = -2844.779030 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.36896 -39.29804 -36.45384 -34.29697 -32.45869 -32.00978 -31.19005 -28.34579 -26.55407 -24.01941 -22.87138 -21.68212 -21.04684 -19.80446 -17.38510 -17.27319 -16.55120 -16.40441 -15.85621 -15.26167 -15.06374 -14.40821 -14.10134 -13.68021 -13.45655 -13.20699 -12.74528 -12.52159 -12.18329 -11.91651 -11.45322 -11.36521 -11.34217 -10.84896 -10.67117 -10.61252 -10.55355 -10.23137 -9.73452 -9.42409 -9.20150 -9.14370 -9.03689 -8.34462 -5.99625 -4.01425 0.92350 1.12281 2.49867 2.87973 3.32794 3.40173 3.45531 3.63265 4.43878 4.48334 4.53418 4.71456 4.83534 4.98882 5.04787 5.22897 5.35356 5.36321 5.36644 5.63039 5.66232 5.68384 5.75226 6.10476 6.14729 6.21205 6.29774 6.58042 6.62623 6.68745 6.82688 7.07980 7.67447 7.78959 8.00263 8.02846 8.43156 9.05634 9.62757 11.11899 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.061538 B = 0.003032 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.895368 B = 9231.111957 C = 9365.612145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.020 3.980 10 C -0.100 4.100 11 C -0.112 4.112 12 C 0.460 3.540 13 O -0.509 6.509 14 O -0.357 6.357 15 C 0.105 3.895 16 C -0.093 4.093 17 C -0.096 4.096 18 C -0.124 4.124 19 C -0.113 4.113 20 C -0.124 4.124 21 C -0.096 4.096 22 H 0.260 0.740 23 H 0.018 0.982 24 H 0.018 0.982 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.755 -24.025 0.005 24.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.137 4.137 11 C -0.149 4.149 12 C 0.304 3.696 13 O -0.396 6.396 14 O -0.275 6.275 15 C 0.031 3.969 16 C -0.093 4.093 17 C -0.114 4.114 18 C -0.142 4.142 19 C -0.131 4.131 20 C -0.142 4.142 21 C -0.114 4.114 22 H 0.069 0.931 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.992 -23.868 0.004 23.951 hybrid contribution 0.510 0.850 -0.001 0.991 sum 2.502 -23.018 0.004 23.154 Atomic orbital electron populations 1.69972 1.06041 1.26514 1.51066 1.25023 0.94867 0.99300 0.95332 0.86524 0.80188 0.83696 0.77549 1.19693 1.21011 1.21016 1.21280 0.93217 0.90904 1.50318 0.92483 1.19134 0.93905 0.91182 0.97453 1.21580 0.98948 0.91231 1.01975 1.21704 0.97325 0.90577 1.05298 1.24460 0.90184 0.83331 0.71667 1.90642 1.18519 1.85108 1.45311 1.86626 1.40594 1.15809 1.84475 1.21740 0.89260 0.82548 1.03321 1.19589 1.01079 0.94804 0.93861 1.21128 0.97432 0.95226 0.97606 1.21164 0.99227 0.95486 0.98313 1.21230 0.99376 0.99907 0.92622 1.21165 0.99204 0.95500 0.98318 1.21127 0.97413 0.95254 0.97599 0.93054 0.96343 0.96331 0.92436 0.92427 0.88078 0.88072 0.90436 0.90429 0.85709 0.85758 0.85929 0.85756 0.85711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.11 4.44 -26.74 -0.12 -2.23 16 11 C -0.11 -1.88 5.81 -27.89 -0.16 -2.05 16 12 C 0.46 7.71 7.96 36.00 0.29 7.99 16 13 O -0.51 -9.83 15.73 -18.75 -0.29 -10.12 16 14 O -0.36 -5.27 10.20 -39.27 -0.40 -5.67 16 15 C 0.10 1.28 5.59 36.01 0.20 1.48 16 16 C -0.09 -1.01 5.52 -104.62 -0.58 -1.59 16 17 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 18 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 19 C -0.11 -0.90 10.05 -39.58 -0.40 -1.30 16 20 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 21 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 22 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 26 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 27 H 0.10 1.57 8.14 -51.92 -0.42 1.14 16 28 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 29 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 30 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 31 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 33 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 309.75 15.07 4.67 4.67 Total: -1.00 -32.36 309.75 -8.22 -40.58 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -5.03 Total: -3.60 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -2.88 Total: -16.51 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.74 Total: -26.23 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.70 Total: -15.79 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.36 -8.22 -40.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846761575.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.862 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds