Wall clock time and date at job start Mon Mar 30 2020 06:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00112 * 2 1 4 4 H 1.48503 * 109.47255 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46892 * 299.99195 * 3 2 1 6 6 H 1.48492 * 109.47505 * 59.99564 * 3 2 1 7 7 C 1.37877 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99996 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47048 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47208 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47278 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00006 * 359.97438 * 12 11 10 14 14 O 1.34236 * 120.00349 * 180.02562 * 12 11 10 15 15 C 1.45190 * 117.00184 * 180.02562 * 14 12 11 16 16 C 1.50707 * 109.47131 * 179.97438 * 15 14 12 17 17 C 1.38238 * 119.99792 * 90.00017 * 16 15 14 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00179 * 269.97954 * 16 15 14 22 22 H 0.97002 * 119.99800 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46754 * 60.00174 * 9 7 2 24 24 H 1.08999 * 109.47248 * 299.99549 * 9 7 2 25 25 H 1.09001 * 109.47197 * 59.99732 * 10 9 7 26 26 H 1.09004 * 109.47466 * 300.00250 * 10 9 7 27 27 H 1.09009 * 109.47115 * 60.00055 * 11 10 9 28 28 H 1.08999 * 109.47169 * 299.99983 * 11 10 9 29 29 H 1.09005 * 109.47695 * 60.00175 * 15 14 12 30 30 H 1.09000 * 109.47342 * 299.99412 * 15 14 12 31 31 H 1.08005 * 120.00068 * 359.97438 * 17 16 15 32 32 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 34 34 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 35 35 H 1.07999 * 119.99968 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2127 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4594 -6.1325 0.0005 13 8 3.6473 -5.9118 -0.0008 14 8 2.0119 -7.3981 0.0004 15 6 3.0119 -8.4508 0.0004 16 6 2.3277 -9.7936 0.0009 17 6 2.0136 -10.4097 -1.1961 18 6 1.3865 -11.6416 -1.1956 19 6 1.0740 -12.2577 0.0018 20 6 1.3833 -11.6392 1.1987 21 6 2.0146 -10.4094 1.1983 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8718 -3.6043 0.8905 26 1 2.8718 -3.6044 -0.8894 27 1 0.8531 -5.0451 -0.8886 28 1 0.8538 -5.0445 0.8914 29 1 3.6347 -8.3605 0.8904 30 1 3.6347 -8.3604 -0.8896 31 1 2.2581 -9.9285 -2.1316 32 1 1.1407 -12.1228 -2.1307 33 1 0.5845 -13.2204 0.0021 34 1 1.1353 -12.1185 2.1342 35 1 2.2607 -9.9284 2.1334 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846761575.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:42 Heat of formation + Delta-G solvation = -101.110622 kcal Electronic energy + Delta-G solvation = -16552.652271 eV Core-core repulsion = 13707.150593 eV Total energy + Delta-G solvation = -2845.501678 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.60997 -40.06550 -37.71816 -36.17343 -34.13030 -33.13565 -31.84325 -30.09335 -27.64221 -25.84844 -23.53265 -22.92940 -22.21386 -21.38386 -18.78942 -18.46809 -17.95662 -17.76304 -17.00297 -16.46659 -16.23843 -15.88659 -15.47538 -14.63079 -14.35222 -14.24077 -14.02484 -14.00823 -13.75866 -13.28624 -13.15235 -12.67530 -12.55147 -12.42537 -12.08984 -12.07738 -11.72111 -11.67728 -11.56714 -11.39365 -11.15517 -10.54784 -9.86701 -9.83492 -8.20369 -6.30340 0.19006 0.45859 1.16183 1.40271 1.40730 1.54168 1.76941 2.42006 2.88732 3.13123 3.57954 3.78124 3.86227 4.08612 4.17307 4.17408 4.22031 4.25962 4.34257 4.59074 4.68102 4.69389 4.89746 4.99374 5.03831 5.11333 5.14892 5.32918 5.51177 5.53531 5.57146 5.58426 5.72761 5.86029 6.04422 6.26042 6.72046 6.85540 7.38495 8.91512 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.061538 B = 0.003032 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.895368 B = 9231.111957 C = 9365.612145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.086 4.086 11 C -0.105 4.105 12 C 0.470 3.530 13 O -0.539 6.539 14 O -0.355 6.355 15 C 0.103 3.897 16 C -0.114 4.114 17 C -0.109 4.109 18 C -0.129 4.129 19 C -0.113 4.113 20 C -0.128 4.128 21 C -0.109 4.109 22 H 0.265 0.735 23 H 0.003 0.997 24 H 0.004 0.996 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.650 -25.224 0.006 25.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.124 4.124 11 C -0.143 4.143 12 C 0.315 3.685 13 O -0.428 6.428 14 O -0.272 6.272 15 C 0.030 3.970 16 C -0.115 4.115 17 C -0.128 4.128 18 C -0.146 4.146 19 C -0.131 4.131 20 C -0.146 4.146 21 C -0.128 4.128 22 H 0.073 0.927 23 H 0.022 0.978 24 H 0.022 0.978 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.148 0.852 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.165 0.835 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.879 -25.093 0.006 25.163 hybrid contribution 0.504 1.104 -0.001 1.213 sum 2.383 -23.989 0.004 24.107 Atomic orbital electron populations 1.70076 1.07541 1.27761 1.51619 1.25913 0.95812 1.03127 0.94721 0.85434 0.78922 0.78969 0.77944 1.19100 1.20154 1.20163 1.21703 0.93432 0.92616 1.50641 0.92786 1.19021 0.94202 0.92163 0.95875 1.21277 0.97898 0.92104 1.01110 1.21521 0.97045 0.88626 1.07065 1.24208 0.89382 0.84001 0.70923 1.90634 1.19642 1.85655 1.46907 1.86599 1.41364 1.15400 1.83830 1.21935 0.89046 0.82511 1.03526 1.19587 1.02657 0.94298 0.94914 1.21322 0.97861 0.96078 0.97491 1.21486 0.98500 0.94958 0.99683 1.21626 0.98475 1.00776 0.92176 1.21487 0.98478 0.94972 0.99689 1.21321 0.97842 0.96104 0.97484 0.92654 0.97823 0.97809 0.93288 0.93283 0.86343 0.86334 0.90261 0.90258 0.85219 0.83550 0.83242 0.83548 0.85218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.25 13.29 21.45 0.28 -55.96 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.55 -31.68 9.11 25.60 0.23 -31.45 16 8 H 0.05 3.09 7.74 -2.91 -0.02 3.06 16 9 C 0.02 1.28 4.97 29.85 0.15 1.42 16 10 C -0.09 -3.68 4.44 30.59 0.14 -3.54 16 11 C -0.11 -3.49 5.81 29.85 0.17 -3.32 16 12 C 0.47 15.52 7.96 71.24 0.57 16.09 16 13 O -0.54 -20.82 15.73 21.97 0.35 -20.48 16 14 O -0.35 -10.23 10.20 -51.48 -0.53 -10.75 16 15 C 0.10 2.49 5.59 71.24 0.40 2.88 16 16 C -0.11 -2.41 5.52 -19.86 -0.11 -2.52 16 17 C -0.11 -2.02 9.70 22.27 0.22 -1.81 16 18 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 19 C -0.11 -1.49 10.05 22.27 0.22 -1.26 16 20 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 21 C -0.11 -2.02 9.70 22.27 0.22 -1.80 16 22 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 23 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 24 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 25 H 0.05 2.15 8.10 -2.39 -0.02 2.13 16 26 H 0.05 2.15 8.10 -2.38 -0.02 2.13 16 27 H 0.12 3.54 8.14 -2.38 -0.02 3.52 16 28 H 0.12 3.54 8.14 -2.39 -0.02 3.52 16 29 H 0.08 1.86 8.08 -2.38 -0.02 1.84 16 30 H 0.08 1.86 8.08 -2.39 -0.02 1.84 16 31 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 32 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 33 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 34 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -68.82 309.75 6.30 -62.52 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.06 Total: 5.80 kcal Atomic # 6 Polarization: -31.13 SS G_CDS: 3.11 Total: -28.02 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.28 Total: -55.96 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.18 Total: -31.23 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -68.82 6.30 -62.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846761575.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.591 kcal (2) G-P(sol) polarization free energy of solvation -68.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds