Wall clock time and date at job start Mon Mar 30 2020 06:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47094 * 90.00289 * 8 6 4 10 10 H 1.48505 * 109.47195 * 210.00171 * 8 6 4 11 11 H 1.48493 * 109.47449 * 330.00136 * 8 6 4 12 12 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 13 13 O 1.20824 * 120.00141 * 119.99957 * 12 2 1 14 14 O 1.34226 * 119.99900 * 300.00390 * 12 2 1 15 15 C 1.45203 * 116.99798 * 179.97438 * 14 12 2 16 16 C 1.53006 * 109.46837 * 179.97438 * 15 14 12 17 17 C 1.53784 * 113.61160 * 274.13686 * 16 15 14 18 18 C 1.53960 * 87.01536 * 220.05156 * 17 16 15 19 19 F 1.39898 * 113.53465 * 270.81148 * 18 17 16 20 20 F 1.39898 * 113.66985 * 139.93729 * 18 17 16 21 21 C 1.53775 * 87.11299 * 25.36304 * 18 17 16 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 26 26 H 1.08993 * 109.47391 * 299.99599 * 15 14 12 27 27 H 1.09000 * 109.47246 * 59.99772 * 15 14 12 28 28 H 1.08993 * 112.85299 * 45.33023 * 16 15 14 29 29 H 1.09002 * 113.61526 * 334.56414 * 17 16 15 30 30 H 1.08996 * 113.61659 * 105.47474 * 17 16 15 31 31 H 1.09005 * 113.61408 * 220.08849 * 21 18 17 32 32 H 1.09002 * 113.69189 * 89.20226 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4868 -0.1414 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 6 2.0323 -0.7104 1.2305 13 8 2.7269 -1.6928 1.1197 14 8 1.7080 -0.2518 2.4496 15 6 2.2266 -0.9864 3.5897 16 6 1.7555 -0.3191 4.8834 17 6 2.6644 0.8304 5.3499 18 6 2.4571 0.3057 6.7825 19 9 1.3453 0.8607 7.4252 20 9 3.6146 0.3430 7.5673 21 6 2.1822 -1.0711 6.1551 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.7096 1.1617 -3.4844 26 1 1.8624 -2.0131 3.5566 27 1 3.3161 -0.9861 3.5570 28 1 0.6973 -0.0587 4.8644 29 1 3.6925 0.7445 4.9981 30 1 2.2392 1.8196 5.1805 31 1 1.3682 -1.6148 6.6347 32 1 3.0773 -1.6790 6.0234 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849852801.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:33 Heat of formation + Delta-G solvation = -179.024448 kcal Electronic energy + Delta-G solvation = -17964.858588 eV Core-core repulsion = 14561.748783 eV Total energy + Delta-G solvation = -3403.109805 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.98522 -47.32405 -39.74814 -38.20282 -35.54479 -33.91161 -30.70733 -28.48458 -26.50438 -25.22973 -23.56494 -22.34673 -20.25031 -19.73044 -17.67974 -16.85705 -16.73459 -16.49985 -16.03119 -15.73052 -15.61809 -14.68957 -14.19905 -14.18016 -13.62890 -13.42212 -13.17337 -12.87323 -12.72875 -12.19012 -11.73863 -11.62843 -11.34609 -11.10878 -11.05868 -10.78140 -10.71424 -10.64570 -10.37618 -10.07945 -10.05539 -9.16004 -9.07210 -8.47379 -6.12974 -4.18582 3.21462 3.25857 3.29109 3.29852 3.34893 3.42684 3.60519 4.06417 4.13134 4.29510 4.42700 5.09864 5.12065 5.17174 5.20057 5.21406 5.30377 5.52704 5.57239 5.65059 5.94547 6.17629 6.63544 6.83545 6.85179 7.16556 7.40639 7.71610 7.91860 8.11445 8.80417 8.90822 9.47196 10.94403 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.055798 B = 0.004142 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.685646 B = 6757.744557 C = 6964.813473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.057 3.943 3 H 0.064 0.936 4 C -0.513 4.513 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.465 3.535 13 O -0.518 6.518 14 O -0.364 6.364 15 C 0.075 3.925 16 C -0.103 4.103 17 C -0.158 4.158 18 C 0.252 3.748 19 F -0.180 7.180 20 F -0.192 7.192 21 C -0.157 4.157 22 H 0.031 0.969 23 H 0.023 0.977 24 H 0.096 0.904 25 H 0.263 0.737 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.784 -0.448 15.741 15.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.038 3.962 3 H 0.082 0.918 4 C -0.551 4.551 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.310 3.690 13 O -0.405 6.405 14 O -0.283 6.283 15 C 0.000 4.000 16 C -0.121 4.121 17 C -0.196 4.196 18 C 0.216 3.784 19 F -0.161 7.161 20 F -0.173 7.173 21 C -0.195 4.195 22 H 0.050 0.950 23 H 0.043 0.957 24 H 0.114 0.886 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.928 -0.623 15.636 15.676 hybrid contribution 0.371 -0.460 -0.510 0.780 sum 1.299 -1.083 15.126 15.221 Atomic orbital electron populations 1.21734 0.95590 1.00041 1.01760 1.18769 0.94873 0.96990 0.85541 0.91795 1.21132 1.31969 1.13249 0.88789 0.90657 1.24936 0.94898 0.94998 0.99144 1.69877 1.36524 1.22751 1.23886 0.86376 0.79444 0.79225 0.81739 1.20519 1.21119 1.19680 1.25372 0.76522 0.83205 0.83893 1.90500 1.36407 1.26776 1.86774 1.86623 1.70470 1.55801 1.15379 1.22697 0.98693 0.95428 0.83185 1.22385 1.01588 0.95619 0.92516 1.24241 1.03226 1.01620 0.90550 1.22130 0.73119 0.97236 0.85905 1.93017 1.52305 1.86830 1.83912 1.93007 1.49096 1.97171 1.78034 1.24086 1.04810 0.95317 0.95268 0.95002 0.95747 0.88571 0.92672 0.91165 0.91358 0.86650 0.86806 0.88248 0.88384 0.86680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.90 37.16 0.33 -2.77 16 2 C 0.06 1.43 2.74 -92.92 -0.25 1.17 16 3 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 4 C -0.51 -14.23 8.37 -34.44 -0.29 -14.52 16 5 H 0.08 2.18 6.76 -52.49 -0.35 1.82 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.54 11.32 55.43 0.63 -23.91 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.47 10.61 7.25 36.01 0.26 10.87 16 13 O -0.52 -12.85 15.21 -18.75 -0.29 -13.14 16 14 O -0.36 -6.83 10.12 -39.25 -0.40 -7.22 16 15 C 0.07 1.06 5.29 37.16 0.20 1.26 16 16 C -0.10 -1.11 3.99 -89.80 -0.36 -1.47 16 17 C -0.16 -1.62 7.43 -25.82 -0.19 -1.81 16 18 C 0.25 2.62 3.28 -25.83 -0.08 2.54 16 19 F -0.18 -2.09 17.38 2.25 0.04 -2.05 16 20 F -0.19 -2.22 17.41 2.25 0.04 -2.18 16 21 C -0.16 -1.38 7.43 -25.92 -0.19 -1.57 16 22 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 24 H 0.10 2.42 6.07 -51.93 -0.32 2.10 16 25 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 26 H 0.07 0.99 8.13 -51.93 -0.42 0.56 16 27 H 0.07 0.95 7.87 -51.93 -0.41 0.54 16 28 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.11 1.09 7.92 -51.93 -0.41 0.68 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.11 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 284.27 15.07 4.28 4.28 Total: -1.00 -29.59 284.27 -5.39 -34.98 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -4.00 Total: -2.26 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -0.68 Total: -4.71 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.63 Total: -23.91 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.68 Total: -20.36 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.08 Total: -4.24 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.59 -5.39 -34.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849852801.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.041 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds