Wall clock time and date at job start Mon Mar 30 2020 06:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47094 * 90.00289 * 8 6 4 10 10 H 1.48505 * 109.47195 * 210.00171 * 8 6 4 11 11 H 1.48493 * 109.47449 * 330.00136 * 8 6 4 12 12 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 13 13 O 1.20824 * 120.00141 * 119.99957 * 12 2 1 14 14 O 1.34226 * 119.99900 * 300.00390 * 12 2 1 15 15 C 1.45203 * 116.99798 * 179.97438 * 14 12 2 16 16 C 1.53006 * 109.46837 * 179.97438 * 15 14 12 17 17 C 1.53784 * 113.61160 * 274.13686 * 16 15 14 18 18 C 1.53960 * 87.01536 * 220.05156 * 17 16 15 19 19 F 1.39898 * 113.53465 * 270.81148 * 18 17 16 20 20 F 1.39898 * 113.66985 * 139.93729 * 18 17 16 21 21 C 1.53775 * 87.11299 * 25.36304 * 18 17 16 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 26 26 H 1.08993 * 109.47391 * 299.99599 * 15 14 12 27 27 H 1.09000 * 109.47246 * 59.99772 * 15 14 12 28 28 H 1.08993 * 112.85299 * 45.33023 * 16 15 14 29 29 H 1.09002 * 113.61526 * 334.56414 * 17 16 15 30 30 H 1.08996 * 113.61659 * 105.47474 * 17 16 15 31 31 H 1.09005 * 113.61408 * 220.08849 * 21 18 17 32 32 H 1.09002 * 113.69189 * 89.20226 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4868 -0.1414 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 6 2.0323 -0.7104 1.2305 13 8 2.7269 -1.6928 1.1197 14 8 1.7080 -0.2518 2.4496 15 6 2.2266 -0.9864 3.5897 16 6 1.7555 -0.3191 4.8834 17 6 2.6644 0.8304 5.3499 18 6 2.4571 0.3057 6.7825 19 9 1.3453 0.8607 7.4252 20 9 3.6146 0.3430 7.5673 21 6 2.1822 -1.0711 6.1551 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.7096 1.1617 -3.4844 26 1 1.8624 -2.0131 3.5566 27 1 3.3161 -0.9861 3.5570 28 1 0.6973 -0.0587 4.8644 29 1 3.6925 0.7445 4.9981 30 1 2.2392 1.8196 5.1805 31 1 1.3682 -1.6148 6.6347 32 1 3.0773 -1.6790 6.0234 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849852801.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:33 Heat of formation + Delta-G solvation = -194.560241 kcal Electronic energy + Delta-G solvation = -17965.532270 eV Core-core repulsion = 14561.748783 eV Total energy + Delta-G solvation = -3403.783488 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.83990 -48.18908 -41.36563 -39.22395 -37.13422 -35.90654 -32.68576 -29.65564 -27.28339 -27.24275 -25.14318 -23.58442 -21.63353 -20.94885 -18.74237 -18.46359 -17.99945 -17.66304 -17.49898 -17.24098 -16.99416 -16.25248 -15.55978 -15.05628 -14.78911 -14.69068 -14.47584 -14.40223 -13.64902 -13.58943 -13.45109 -12.97218 -12.80653 -12.60056 -12.55146 -12.39662 -12.25474 -12.09964 -12.04157 -11.48111 -11.37117 -11.09606 -10.99552 -10.52045 -8.19253 -6.32378 1.42805 1.43840 1.46801 1.54892 1.86371 2.43987 2.46811 2.78672 3.11084 3.22305 3.30457 3.39240 4.07563 4.14465 4.21811 4.41308 4.48084 4.52552 4.62480 4.70897 4.72909 4.78902 4.92124 5.01761 5.18312 5.40919 5.50589 5.70544 5.90371 6.12159 6.74311 7.07234 7.36680 8.87058 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.055798 B = 0.004142 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.685646 B = 6757.744557 C = 6964.813473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.048 3.952 3 H 0.051 0.949 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.963 3.037 9 H -0.273 1.273 10 H -0.275 1.275 11 H -0.275 1.275 12 C 0.474 3.526 13 O -0.543 6.543 14 O -0.360 6.360 15 C 0.068 3.932 16 C -0.100 4.100 17 C -0.160 4.160 18 C 0.248 3.752 19 F -0.188 7.188 20 F -0.199 7.199 21 C -0.142 4.142 22 H 0.029 0.971 23 H 0.050 0.950 24 H 0.076 0.924 25 H 0.268 0.732 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.709 -0.842 16.400 16.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.029 3.971 3 H 0.069 0.931 4 C -0.577 4.577 5 H 0.075 0.925 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.788 3.212 9 H -0.198 1.198 10 H -0.200 1.200 11 H -0.200 1.200 12 C 0.320 3.680 13 O -0.433 6.433 14 O -0.277 6.277 15 C -0.005 4.005 16 C -0.118 4.118 17 C -0.198 4.198 18 C 0.212 3.788 19 F -0.169 7.169 20 F -0.180 7.180 21 C -0.180 4.180 22 H 0.048 0.952 23 H 0.069 0.931 24 H 0.094 0.906 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.119 0.881 31 H 0.134 0.866 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.838 -0.999 16.321 16.373 hybrid contribution 0.401 -0.298 -0.619 0.795 sum 1.239 -1.297 15.702 15.804 Atomic orbital electron populations 1.21560 0.94363 0.99904 1.02029 1.18686 0.95930 0.96197 0.86305 0.93103 1.21266 1.32588 1.13262 0.90546 0.92546 1.25628 0.94916 0.95632 1.01561 1.69958 1.36717 1.23359 1.24715 0.85484 0.78723 0.78435 0.78600 1.19806 1.20014 1.20034 1.24763 0.75975 0.82476 0.84815 1.90481 1.37534 1.27813 1.87464 1.86555 1.70098 1.55945 1.15149 1.23088 0.99140 0.95741 0.82557 1.22350 1.01803 0.96304 0.91377 1.24301 1.03509 1.01552 0.90471 1.22242 0.72675 0.98288 0.85595 1.93003 1.52679 1.87101 1.84095 1.92994 1.49513 1.97260 1.78237 1.24078 1.06024 0.94612 0.93236 0.95224 0.93092 0.90558 0.92291 0.90714 0.90871 0.86348 0.86173 0.88131 0.86603 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.90 71.98 0.64 -4.92 16 2 C 0.05 2.40 2.74 -12.28 -0.03 2.37 16 3 H 0.05 2.66 8.14 -2.39 -0.02 2.64 16 4 C -0.54 -30.19 8.37 25.60 0.21 -29.98 16 5 H 0.06 3.32 6.76 -2.91 -0.02 3.30 16 6 C 0.02 1.23 5.30 84.66 0.45 1.68 16 7 N -0.91 -49.93 11.32 21.45 0.24 -49.69 16 8 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 10 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.47 21.51 7.25 71.24 0.52 22.03 16 13 O -0.54 -27.00 15.21 21.97 0.33 -26.66 16 14 O -0.36 -13.07 10.12 -51.38 -0.52 -13.59 16 15 C 0.07 1.83 5.29 71.98 0.38 2.21 16 16 C -0.10 -1.93 3.99 -10.26 -0.04 -1.98 16 17 C -0.16 -2.97 7.43 31.18 0.23 -2.74 16 18 C 0.25 4.64 3.28 31.18 0.10 4.74 16 19 F -0.19 -4.04 17.38 44.97 0.78 -3.26 16 20 F -0.20 -4.25 17.41 44.97 0.78 -3.46 16 21 C -0.14 -2.09 7.43 31.12 0.23 -1.86 16 22 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.05 2.01 8.11 -2.39 -0.02 1.99 16 24 H 0.08 3.83 6.07 -2.39 -0.01 3.82 16 25 H 0.27 13.87 8.31 -92.71 -0.77 13.09 16 26 H 0.07 1.96 8.13 -2.39 -0.02 1.94 16 27 H 0.07 1.90 7.87 -2.39 -0.02 1.89 16 28 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.12 2.08 7.92 -2.39 -0.02 2.06 16 30 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.12 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.13 1.58 8.10 -2.39 -0.02 1.56 16 Total: -1.00 -62.33 284.27 7.46 -54.86 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: 1.12 Total: 4.89 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 2.69 Total: -8.45 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.24 Total: -49.69 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -0.19 Total: -40.25 kcal Atomic # 9 Polarization: -8.29 SS G_CDS: 1.56 Total: -6.72 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -62.33 7.46 -54.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849852801.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.696 kcal (2) G-P(sol) polarization free energy of solvation -62.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds