Wall clock time and date at job start Mon Mar 30 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47367 * 2 1 4 4 C 1.50703 * 109.47259 * 119.99897 * 2 1 3 5 5 H 1.07999 * 120.00152 * 114.34946 * 4 2 1 6 6 C 1.37879 * 119.99898 * 294.35745 * 4 2 1 7 7 N 1.31507 * 119.99939 * 156.51722 * 6 4 2 8 8 Si 1.86800 * 119.99920 * 336.79832 * 6 4 2 9 9 H 1.48500 * 109.47295 * 179.72490 * 8 6 4 10 10 H 1.48504 * 109.47219 * 299.72276 * 8 6 4 11 11 H 1.48507 * 109.47298 * 59.72421 * 8 6 4 12 12 C 1.50703 * 109.47112 * 239.99736 * 2 1 3 13 13 O 1.20825 * 120.00110 * 240.00356 * 12 2 1 14 14 O 1.34228 * 119.99651 * 60.00053 * 12 2 1 15 15 C 1.45201 * 116.99993 * 179.97438 * 14 12 2 16 16 C 1.52992 * 109.47351 * 180.02562 * 15 14 12 17 17 C 1.53783 * 113.61825 * 274.13762 * 16 15 14 18 18 C 1.53949 * 87.02431 * 220.05014 * 17 16 15 19 19 F 1.39897 * 113.53685 * 270.81080 * 18 17 16 20 20 F 1.39906 * 113.66696 * 139.92996 * 18 17 16 21 21 C 1.53779 * 87.11128 * 25.36375 * 18 17 16 22 22 H 1.09007 * 109.46646 * 53.11482 * 1 2 3 23 23 H 1.08994 * 109.47507 * 173.11288 * 1 2 3 24 24 H 1.08999 * 109.47261 * 293.12213 * 1 2 3 25 25 H 0.96999 * 120.00644 * 355.21451 * 7 6 4 26 26 H 1.08999 * 109.47269 * 300.00664 * 15 14 12 27 27 H 1.09006 * 109.46556 * 59.99928 * 15 14 12 28 28 H 1.09001 * 112.85372 * 45.33661 * 16 15 14 29 29 H 1.09006 * 113.61241 * 334.57189 * 17 16 15 30 30 H 1.09000 * 113.61738 * 105.46641 * 17 16 15 31 31 H 1.08999 * 113.61242 * 220.09331 * 21 18 17 32 32 H 1.08995 * 113.69523 * 89.20312 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5760 -1.6386 1.1340 6 6 1.7979 -0.1754 2.4794 7 7 1.8009 -0.9538 3.5393 8 14 1.4681 1.6539 2.6649 9 1 1.2419 1.9734 4.0974 10 1 2.6375 2.4209 2.1655 11 1 0.2627 2.0218 1.8794 12 6 2.0323 -0.7105 -1.2305 13 8 2.7269 -1.6929 -1.1196 14 8 1.7080 -0.2519 -2.4496 15 6 2.2276 -0.9858 -3.5896 16 6 1.7565 -0.3186 -4.8833 17 6 0.3698 -0.7912 -5.3507 18 6 0.9340 -0.7707 -6.7829 19 9 0.7825 0.4627 -7.4254 20 9 0.5126 -1.8492 -7.5681 21 6 2.3234 -0.9717 -6.1551 22 1 -0.3633 0.6169 -0.8220 23 1 -0.3634 -1.0202 -0.1232 24 1 -0.3634 0.4035 0.9451 25 1 1.8988 -1.9133 3.4362 26 1 3.3171 -0.9847 -3.5565 27 1 1.8641 -2.0129 -3.5568 28 1 1.8646 0.7659 -4.8641 29 1 0.1071 -1.7890 -4.9991 30 1 -0.4207 -0.0601 -5.1813 31 1 3.1079 -0.3859 -6.6342 32 1 2.5973 -2.0184 -6.0235 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849852804.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:36 Heat of formation + Delta-G solvation = -197.254510 kcal Electronic energy + Delta-G solvation = -18036.250755 eV Core-core repulsion = 14632.350435 eV Total energy + Delta-G solvation = -3403.900320 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.85006 -48.20046 -41.46471 -39.26312 -37.21327 -35.94764 -33.30468 -29.74754 -27.27920 -26.86871 -25.18023 -23.55157 -21.55218 -20.93074 -19.55370 -18.61658 -18.40602 -17.72178 -17.57228 -17.24567 -16.83166 -15.96567 -15.44176 -15.06797 -14.96943 -14.75676 -14.49616 -14.31871 -13.95730 -13.87732 -13.57764 -13.22367 -13.04611 -12.57687 -12.43454 -12.37535 -12.14525 -12.03269 -11.66059 -11.52073 -11.40019 -11.10574 -11.09179 -10.40933 -8.83122 -6.40656 1.35985 1.52787 1.59761 1.73195 1.81885 2.44888 2.53094 2.76832 2.99613 3.20732 3.28019 3.35325 4.01316 4.09532 4.15173 4.33878 4.42303 4.46258 4.48721 4.58806 4.64007 4.70419 4.76239 4.88279 5.08820 5.17569 5.38599 5.49839 5.79222 6.03857 6.55693 6.98357 7.35978 8.56336 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.048237 B = 0.004462 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.323376 B = 6273.135673 C = 6499.042056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.023 3.977 3 H 0.077 0.923 4 C -0.619 4.619 5 H 0.023 0.977 6 C -0.007 4.007 7 N -0.923 5.923 8 Si 1.076 2.924 9 H -0.288 1.288 10 H -0.262 1.262 11 H -0.230 1.230 12 C 0.477 3.523 13 O -0.547 6.547 14 O -0.354 6.354 15 C 0.068 3.932 16 C -0.098 4.098 17 C -0.159 4.159 18 C 0.248 3.752 19 F -0.187 7.187 20 F -0.200 7.200 21 C -0.145 4.145 22 H 0.078 0.922 23 H 0.037 0.963 24 H 0.060 0.940 25 H 0.253 0.747 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.057 4.891 -20.634 21.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.004 3.996 3 H 0.095 0.905 4 C -0.656 4.656 5 H 0.041 0.959 6 C -0.207 4.207 7 N -0.557 5.557 8 Si 0.895 3.105 9 H -0.213 1.213 10 H -0.187 1.187 11 H -0.153 1.153 12 C 0.322 3.678 13 O -0.436 6.436 14 O -0.271 6.271 15 C -0.005 4.005 16 C -0.116 4.116 17 C -0.197 4.197 18 C 0.212 3.788 19 F -0.168 7.168 20 F -0.181 7.181 21 C -0.182 4.182 22 H 0.097 0.903 23 H 0.056 0.944 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.128 5.745 -19.578 20.642 hybrid contribution 0.647 -2.149 -0.968 2.444 sum -2.481 3.596 -20.546 21.005 Atomic orbital electron populations 1.21967 0.93611 1.01080 1.02393 1.19026 0.96192 0.97364 0.87051 0.90519 1.21944 1.41251 1.10178 0.92241 0.95892 1.27327 0.92121 1.10065 0.91174 1.70974 1.45961 1.05743 1.33004 0.83712 0.79791 0.69922 0.77110 1.21348 1.18661 1.15346 1.24467 0.76027 0.82463 0.84837 1.90522 1.37552 1.28074 1.87475 1.86530 1.69977 1.55783 1.14855 1.23095 0.99439 0.95383 0.82628 1.22353 0.95830 1.02404 0.91020 1.24292 0.99239 1.05868 0.90304 1.22241 0.99385 0.71523 0.85674 1.93005 1.96643 1.43027 1.84106 1.92997 1.91730 1.55112 1.78257 1.24091 0.95126 1.05573 0.93439 0.90308 0.94415 0.92075 0.93806 0.90856 0.91163 0.85874 0.86368 0.87717 0.86589 0.85519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.19 8.85 71.98 0.64 -4.55 16 2 C 0.02 1.06 2.34 -12.28 -0.03 1.03 16 3 H 0.08 3.20 6.72 -2.39 -0.02 3.18 16 4 C -0.62 -35.58 8.57 25.60 0.22 -35.36 16 5 H 0.02 1.53 7.02 -2.91 -0.02 1.51 16 6 C -0.01 -0.42 5.19 84.66 0.44 0.02 16 7 N -0.92 -57.24 13.70 21.45 0.29 -56.94 16 8 Si 1.08 46.15 26.45 68.60 1.81 47.97 16 9 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 10 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 11 H -0.23 -8.27 6.15 99.48 0.61 -7.66 16 12 C 0.48 20.79 7.24 71.24 0.52 21.30 16 13 O -0.55 -27.80 15.22 21.97 0.33 -27.47 16 14 O -0.35 -11.81 10.15 -51.39 -0.52 -12.33 16 15 C 0.07 1.73 5.29 71.98 0.38 2.11 16 16 C -0.10 -1.71 3.99 -10.27 -0.04 -1.75 16 17 C -0.16 -2.66 7.43 31.18 0.23 -2.42 16 18 C 0.25 4.33 3.28 31.18 0.10 4.43 16 19 F -0.19 -3.74 17.38 44.97 0.78 -2.96 16 20 F -0.20 -4.11 17.41 44.97 0.78 -3.32 16 21 C -0.14 -1.99 7.43 31.12 0.23 -1.76 16 22 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 23 H 0.04 1.50 8.13 -2.39 -0.02 1.48 16 24 H 0.06 2.42 5.48 -2.39 -0.01 2.40 16 25 H 0.25 16.17 8.73 -92.71 -0.81 15.36 16 26 H 0.07 1.86 8.13 -2.39 -0.02 1.84 16 27 H 0.07 1.79 7.87 -2.38 -0.02 1.77 16 28 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.12 1.88 7.92 -2.38 -0.02 1.86 16 30 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.13 1.50 8.10 -2.39 -0.02 1.48 16 Total: -1.00 -70.23 280.95 7.17 -63.06 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.99 Total: 8.94 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 2.69 Total: -16.94 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.29 Total: -56.94 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -0.19 Total: -39.80 kcal Atomic # 9 Polarization: -7.85 SS G_CDS: 1.56 Total: -6.28 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.81 Total: 47.97 kcal Total: -70.23 7.17 -63.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849852804.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.196 kcal (2) G-P(sol) polarization free energy of solvation -70.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds