Wall clock time and date at job start Mon Mar 30 2020 06:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38141 * 120.02996 * 2 1 4 4 C 1.38274 * 120.05552 * 179.70225 * 3 2 1 5 5 C 1.38261 * 120.10990 * 0.30244 * 4 3 2 6 6 C 1.38149 * 120.05703 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.02698 * 180.02562 * 6 5 4 8 8 C 1.38729 * 119.94477 * 359.97438 * 6 5 4 9 9 O 1.35897 * 120.05793 * 180.02562 * 8 6 5 10 10 C 1.42904 * 116.99870 * 90.00223 * 9 8 6 11 11 C 1.53002 * 109.47152 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.46832 * 179.97438 * 11 10 9 13 13 O 1.21433 * 120.00284 * 0.02562 * 12 11 10 14 14 C 1.41027 * 120.00051 * 180.02562 * 12 11 10 15 15 H 1.08003 * 119.99597 * 0.02562 * 14 12 11 16 16 C 1.40458 * 120.00597 * 180.02562 * 14 12 11 17 17 N 1.30529 * 119.99635 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00548 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46770 * 59.99463 * 18 16 14 20 20 H 1.48501 * 109.47456 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47005 * 299.99984 * 18 16 14 22 22 H 1.09000 * 109.47072 * 89.98949 * 1 2 3 23 23 H 1.08998 * 109.47473 * 209.99832 * 1 2 3 24 24 H 1.09000 * 109.46857 * 329.99816 * 1 2 3 25 25 H 1.08002 * 119.97550 * 359.97438 * 3 2 1 26 26 H 1.07998 * 119.94363 * 180.27764 * 4 3 2 27 27 H 1.07996 * 119.97484 * 179.97438 * 5 4 3 28 28 H 1.08998 * 109.47189 * 89.99754 * 7 6 5 29 29 H 1.09006 * 109.46628 * 209.99786 * 7 6 5 30 30 H 1.09001 * 109.47332 * 329.99143 * 7 6 5 31 31 H 1.08998 * 109.47029 * 300.00379 * 10 9 8 32 32 H 1.08998 * 109.47170 * 59.99852 * 10 9 8 33 33 H 1.08992 * 109.47010 * 300.00255 * 11 10 9 34 34 H 1.08995 * 109.46796 * 60.00374 * 11 10 9 35 35 H 0.96997 * 119.99669 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5811 1.1966 0.0062 5 6 4.2752 0.0009 0.0061 6 6 3.5885 -1.1979 0.0004 7 6 4.3458 -2.5008 0.0009 8 6 2.2012 -1.2012 -0.0048 9 8 1.5234 -2.3790 -0.0099 10 6 1.1951 -2.9441 1.2609 11 6 0.4398 -4.2587 1.0547 12 6 0.0941 -4.8548 2.3949 13 8 0.4197 -4.2836 3.4158 14 6 -0.6076 -6.0762 2.4635 15 1 -0.8968 -6.5845 1.5555 16 6 -0.9303 -6.6317 3.7125 17 7 -0.5803 -6.0176 4.8099 18 14 -1.8603 -8.2491 3.8034 19 1 -1.0711 -9.3123 3.1309 20 1 -2.0752 -8.6174 5.2258 21 1 -3.1736 -8.1038 3.1253 22 1 -0.3633 0.0002 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6584 2.1313 -0.0004 26 1 4.1197 2.1327 0.0107 27 1 5.3552 0.0039 0.0106 28 1 4.5238 -2.8172 1.0286 29 1 3.7611 -3.2610 -0.5173 30 1 5.3001 -2.3666 -0.5085 31 1 2.1104 -3.1353 1.8209 32 1 0.5677 -2.2476 1.8171 33 1 -0.4755 -4.0678 0.4945 34 1 1.0676 -4.9550 0.4988 35 1 -0.8035 -6.4010 5.6725 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041229816.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:09 Heat of formation + Delta-G solvation = -76.294368 kcal Electronic energy + Delta-G solvation = -17507.786547 eV Core-core repulsion = 14663.360982 eV Total energy + Delta-G solvation = -2844.425565 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.97620 -37.38360 -36.46533 -33.45349 -32.74433 -31.33437 -30.15353 -27.29149 -26.52686 -26.48074 -23.07654 -21.50403 -20.75020 -19.18194 -17.47820 -16.28722 -16.17971 -15.37977 -14.97340 -14.70713 -14.29626 -13.92606 -13.41551 -13.04345 -13.01595 -12.87557 -12.68026 -12.54448 -12.30648 -11.77657 -11.52645 -11.35168 -11.28979 -11.24501 -10.96472 -10.57867 -10.31061 -10.27618 -10.18223 -9.27806 -8.93556 -8.49191 -8.30659 -7.43961 -6.26916 -4.92796 1.35900 1.42503 3.06374 3.12731 3.14964 3.60884 4.01303 4.21057 4.28268 4.88200 4.92545 5.02827 5.31894 5.40912 5.49573 5.60944 5.65904 5.78016 5.82001 5.88845 5.91052 5.95261 5.97130 6.16824 6.30661 6.40841 6.52655 6.53893 6.62648 6.72312 6.82660 6.89210 7.01114 7.24207 8.00026 8.06840 8.80188 8.85460 10.31314 10.53794 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.040026 B = 0.004532 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.376815 B = 6177.360566 C = 6421.715380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.102 4.102 3 C -0.117 4.117 4 C -0.128 4.128 5 C -0.117 4.117 6 C -0.102 4.102 7 C -0.113 4.113 8 C 0.107 3.893 9 O -0.343 6.343 10 C 0.087 3.913 11 C -0.155 4.155 12 C 0.366 3.634 13 O -0.548 6.548 14 C -0.534 4.534 15 H 0.070 0.930 16 C 0.083 3.917 17 N -0.740 5.740 18 Si 0.907 3.093 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.265 1.265 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.122 0.878 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.490 9.498 -8.702 14.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.103 4.103 3 C -0.135 4.135 4 C -0.146 4.146 5 C -0.135 4.135 6 C -0.103 4.103 7 C -0.170 4.170 8 C 0.063 3.937 9 O -0.260 6.260 10 C 0.014 3.986 11 C -0.193 4.193 12 C 0.261 3.739 13 O -0.438 6.438 14 C -0.565 4.565 15 H 0.088 0.912 16 C -0.140 4.140 17 N -0.369 5.369 18 Si 0.731 3.269 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.189 1.189 22 H 0.089 0.911 23 H 0.092 0.908 24 H 0.082 0.918 25 H 0.140 0.860 26 H 0.138 0.862 27 H 0.140 0.860 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.607 9.704 -8.181 13.876 hybrid contribution -0.405 -0.707 0.055 0.817 sum 5.202 8.997 -8.126 13.192 Atomic orbital electron populations 1.20717 0.90718 1.03033 1.02387 1.20270 0.96850 0.92559 1.00602 1.20881 0.94152 0.96970 1.01541 1.21049 0.94220 0.97819 1.01474 1.20881 0.99549 0.91577 1.01541 1.20269 0.93238 0.96184 1.00573 1.20714 0.99207 0.94421 1.02642 1.18442 0.89476 0.85755 1.00043 1.85953 1.74379 1.34171 1.31542 1.22575 0.99142 0.95118 0.81770 1.22079 0.99702 0.94365 1.03157 1.19355 0.81205 0.86825 0.86521 1.90413 1.53801 1.63091 1.36490 1.20733 1.35310 1.07335 0.93155 0.91179 1.26017 0.94405 0.98289 0.95333 1.69950 1.32772 1.35734 0.98420 0.86437 0.80558 0.81993 0.77941 1.18942 1.20335 1.18937 0.91139 0.90794 0.91799 0.86021 0.86163 0.86023 0.91105 0.90639 0.91799 0.92904 0.92876 0.91010 0.91004 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.79 36.01 0.35 -1.21 16 2 C -0.10 -1.57 5.89 -104.47 -0.62 -2.18 16 3 C -0.12 -1.52 9.70 -39.60 -0.38 -1.90 16 4 C -0.13 -1.54 10.04 -39.56 -0.40 -1.94 16 5 C -0.12 -1.52 9.70 -39.61 -0.38 -1.90 16 6 C -0.10 -1.56 5.89 -104.47 -0.62 -2.18 16 7 C -0.11 -1.57 9.79 36.01 0.35 -1.22 16 8 C 0.11 1.83 5.67 -39.22 -0.22 1.61 16 9 O -0.34 -6.51 8.33 -19.42 -0.16 -6.67 16 10 C 0.09 1.84 4.98 37.16 0.18 2.02 16 11 C -0.15 -3.48 5.94 -27.88 -0.17 -3.64 16 12 C 0.37 10.20 6.90 -33.25 -0.23 9.98 16 13 O -0.55 -17.17 14.50 5.42 0.08 -17.09 16 14 C -0.53 -14.78 9.22 -37.69 -0.35 -15.13 16 15 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 16 C 0.08 2.24 5.50 -17.27 -0.10 2.14 16 17 N -0.74 -21.39 11.72 55.57 0.65 -20.74 16 18 Si 0.91 19.39 29.56 -169.99 -5.03 14.37 16 19 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 22 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.07 1.17 6.30 -51.93 -0.33 0.85 16 24 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 25 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 26 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 27 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.12 7.53 -51.93 -0.39 0.73 16 30 H 0.06 0.71 8.09 -51.93 -0.42 0.30 16 31 H 0.05 1.16 8.10 -51.93 -0.42 0.74 16 32 H 0.05 1.17 7.19 -51.93 -0.37 0.79 16 33 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 34 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 LS Contribution 302.64 15.07 4.56 4.56 Total: -1.00 -31.94 302.64 -7.32 -39.26 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.86 Total: 1.86 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -2.57 Total: -15.55 kcal Atomic # 7 Polarization: -21.39 SS G_CDS: 0.65 Total: -20.74 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.08 Total: -23.76 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.94 -7.32 -39.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041229816.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.037 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds