Wall clock time and date at job start Mon Mar 30 2020 06:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38141 * 120.02996 * 2 1 4 4 C 1.38274 * 120.05552 * 179.70225 * 3 2 1 5 5 C 1.38261 * 120.10990 * 0.30244 * 4 3 2 6 6 C 1.38149 * 120.05703 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.02698 * 180.02562 * 6 5 4 8 8 C 1.38729 * 119.94477 * 359.97438 * 6 5 4 9 9 O 1.35897 * 120.05793 * 180.02562 * 8 6 5 10 10 C 1.42904 * 116.99870 * 90.00223 * 9 8 6 11 11 C 1.53002 * 109.47152 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.46832 * 179.97438 * 11 10 9 13 13 O 1.21433 * 120.00284 * 0.02562 * 12 11 10 14 14 C 1.41027 * 120.00051 * 180.02562 * 12 11 10 15 15 H 1.08003 * 119.99597 * 0.02562 * 14 12 11 16 16 C 1.40458 * 120.00597 * 180.02562 * 14 12 11 17 17 N 1.30529 * 119.99635 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00548 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46770 * 59.99463 * 18 16 14 20 20 H 1.48501 * 109.47456 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47005 * 299.99984 * 18 16 14 22 22 H 1.09000 * 109.47072 * 89.98949 * 1 2 3 23 23 H 1.08998 * 109.47473 * 209.99832 * 1 2 3 24 24 H 1.09000 * 109.46857 * 329.99816 * 1 2 3 25 25 H 1.08002 * 119.97550 * 359.97438 * 3 2 1 26 26 H 1.07998 * 119.94363 * 180.27764 * 4 3 2 27 27 H 1.07996 * 119.97484 * 179.97438 * 5 4 3 28 28 H 1.08998 * 109.47189 * 89.99754 * 7 6 5 29 29 H 1.09006 * 109.46628 * 209.99786 * 7 6 5 30 30 H 1.09001 * 109.47332 * 329.99143 * 7 6 5 31 31 H 1.08998 * 109.47029 * 300.00379 * 10 9 8 32 32 H 1.08998 * 109.47170 * 59.99852 * 10 9 8 33 33 H 1.08992 * 109.47010 * 300.00255 * 11 10 9 34 34 H 1.08995 * 109.46796 * 60.00374 * 11 10 9 35 35 H 0.96997 * 119.99669 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5811 1.1966 0.0062 5 6 4.2752 0.0009 0.0061 6 6 3.5885 -1.1979 0.0004 7 6 4.3458 -2.5008 0.0009 8 6 2.2012 -1.2012 -0.0048 9 8 1.5234 -2.3790 -0.0099 10 6 1.1951 -2.9441 1.2609 11 6 0.4398 -4.2587 1.0547 12 6 0.0941 -4.8548 2.3949 13 8 0.4197 -4.2836 3.4158 14 6 -0.6076 -6.0762 2.4635 15 1 -0.8968 -6.5845 1.5555 16 6 -0.9303 -6.6317 3.7125 17 7 -0.5803 -6.0176 4.8099 18 14 -1.8603 -8.2491 3.8034 19 1 -1.0711 -9.3123 3.1309 20 1 -2.0752 -8.6174 5.2258 21 1 -3.1736 -8.1038 3.1253 22 1 -0.3633 0.0002 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6584 2.1313 -0.0004 26 1 4.1197 2.1327 0.0107 27 1 5.3552 0.0039 0.0106 28 1 4.5238 -2.8172 1.0286 29 1 3.7611 -3.2610 -0.5173 30 1 5.3001 -2.3666 -0.5085 31 1 2.1104 -3.1353 1.8209 32 1 0.5677 -2.2476 1.8171 33 1 -0.4755 -4.0678 0.4945 34 1 1.0676 -4.9550 0.4988 35 1 -0.8035 -6.4010 5.6725 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041229816.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:09 Heat of formation + Delta-G solvation = -94.713112 kcal Electronic energy + Delta-G solvation = -17508.585244 eV Core-core repulsion = 14663.360982 eV Total energy + Delta-G solvation = -2845.224261 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.18965 -39.20268 -38.09761 -34.84151 -34.53935 -32.83825 -31.62860 -29.18730 -27.86282 -27.56723 -24.85323 -22.67939 -21.84572 -21.19730 -18.92003 -18.20316 -17.59787 -17.04011 -16.36847 -16.04921 -15.90636 -15.23799 -15.01388 -14.71581 -14.33165 -14.23490 -14.01664 -13.88763 -13.61431 -13.31578 -12.94510 -12.86903 -12.65029 -12.51407 -12.46072 -12.33072 -12.09809 -11.96964 -11.86480 -10.97815 -10.78574 -9.63283 -9.54941 -9.44971 -8.33585 -7.13494 0.21593 0.36260 1.37010 1.38234 1.53393 2.15664 2.20243 2.42540 2.99178 3.33615 3.80482 3.87986 4.08111 4.12051 4.20799 4.36168 4.39882 4.42862 4.48207 4.59854 4.69198 4.72287 4.78019 4.88574 4.89520 4.97363 5.04255 5.17869 5.19478 5.30589 5.50213 5.50406 5.62668 5.89573 5.95301 6.59615 6.69274 6.74896 8.21490 8.47250 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.040026 B = 0.004532 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.376815 B = 6177.360566 C = 6421.715380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.118 4.118 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.111 4.111 8 C 0.058 3.942 9 O -0.344 6.344 10 C 0.107 3.893 11 C -0.143 4.143 12 C 0.342 3.658 13 O -0.595 6.595 14 C -0.562 4.562 15 H 0.089 0.911 16 C 0.027 3.973 17 N -0.789 5.789 18 Si 0.996 3.004 19 H -0.252 1.252 20 H -0.269 1.269 21 H -0.252 1.252 22 H 0.081 0.919 23 H 0.044 0.956 24 H 0.085 0.915 25 H 0.151 0.849 26 H 0.159 0.841 27 H 0.151 0.849 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.759 10.000 -9.824 15.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.119 4.119 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.137 4.137 6 C -0.119 4.119 7 C -0.168 4.168 8 C 0.015 3.985 9 O -0.262 6.262 10 C 0.033 3.967 11 C -0.181 4.181 12 C 0.240 3.760 13 O -0.489 6.489 14 C -0.593 4.593 15 H 0.107 0.893 16 C -0.193 4.193 17 N -0.418 5.418 18 Si 0.814 3.186 19 H -0.176 1.176 20 H -0.193 1.193 21 H -0.176 1.176 22 H 0.100 0.900 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.169 0.831 26 H 0.176 0.824 27 H 0.169 0.831 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.882 10.216 -9.339 15.040 hybrid contribution -0.413 -0.725 0.375 0.915 sum 5.469 9.492 -8.964 14.154 Atomic orbital electron populations 1.20721 0.90378 1.02635 1.02979 1.20540 0.97509 0.92974 1.00847 1.21268 0.94937 0.97070 1.00441 1.21551 0.94059 0.99058 0.98784 1.21273 1.01119 0.90906 1.00425 1.20537 0.92789 0.97698 1.00856 1.20709 1.00245 0.93659 1.02170 1.18869 0.90576 0.85488 1.03556 1.85932 1.74932 1.35573 1.29741 1.22105 0.97587 0.94234 0.82766 1.21814 1.00728 0.95156 1.00406 1.20069 0.80789 0.87254 0.87849 1.90371 1.55680 1.64329 1.38528 1.21289 1.35531 1.07778 0.94657 0.89327 1.27267 0.94882 1.02770 0.94339 1.70086 1.33942 1.38217 0.99525 0.85097 0.79049 0.75885 0.78554 1.17612 1.19338 1.17602 0.90023 0.93657 0.89664 0.83089 0.82354 0.83090 0.92065 0.92376 0.88840 0.94806 0.94730 0.89685 0.89675 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.08 9.79 71.24 0.70 -2.38 16 2 C -0.12 -3.57 5.89 -19.77 -0.12 -3.68 16 3 C -0.12 -2.78 9.70 22.26 0.22 -2.57 16 4 C -0.12 -2.41 10.04 22.28 0.22 -2.19 16 5 C -0.12 -2.79 9.70 22.25 0.22 -2.57 16 6 C -0.12 -3.57 5.89 -19.77 -0.12 -3.69 16 7 C -0.11 -3.10 9.79 71.24 0.70 -2.40 16 8 C 0.06 2.03 5.67 22.51 0.13 2.16 16 9 O -0.34 -13.61 8.33 -92.39 -0.77 -14.38 16 10 C 0.11 4.78 4.98 71.98 0.36 5.14 16 11 C -0.14 -6.66 5.94 29.85 0.18 -6.48 16 12 C 0.34 19.82 6.90 26.37 0.18 20.00 16 13 O -0.60 -39.26 14.50 -3.50 -0.05 -39.31 16 14 C -0.56 -31.60 9.22 23.49 0.22 -31.38 16 15 H 0.09 4.49 7.85 -2.91 -0.02 4.46 16 16 C 0.03 1.45 5.50 85.43 0.47 1.92 16 17 N -0.79 -46.76 11.72 21.91 0.26 -46.50 16 18 Si 1.00 39.38 29.56 68.60 2.03 41.41 16 19 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 20 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 21 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 22 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.04 1.50 6.30 -2.39 -0.02 1.49 16 24 H 0.08 1.93 8.09 -2.39 -0.02 1.91 16 25 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 26 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 27 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.06 1.78 7.53 -2.38 -0.02 1.77 16 30 H 0.09 1.96 8.09 -2.39 -0.02 1.94 16 31 H 0.03 1.60 8.10 -2.39 -0.02 1.58 16 32 H 0.03 1.64 7.19 -2.39 -0.02 1.62 16 33 H 0.08 3.69 8.14 -2.39 -0.02 3.67 16 34 H 0.08 3.69 8.14 -2.39 -0.02 3.67 16 35 H 0.28 14.96 8.29 -92.71 -0.77 14.20 16 Total: -1.00 -72.41 302.64 5.89 -66.53 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 1.07 Total: 20.38 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 3.35 Total: -28.12 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.26 Total: -46.50 kcal Atomic # 8 Polarization: -52.87 SS G_CDS: -0.82 Total: -53.69 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Total: -72.41 5.89 -66.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041229816.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.186 kcal (2) G-P(sol) polarization free energy of solvation -72.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds