Wall clock time and date at job start Mon Mar 30 2020 06:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38261 * 119.97063 * 2 1 4 4 C 1.38268 * 120.10988 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.97155 * 180.02562 * 4 3 2 6 6 C 1.38139 * 120.05525 * 359.97438 * 4 3 2 7 7 C 1.38733 * 119.94491 * 0.02562 * 6 4 3 8 8 O 1.35905 * 120.05258 * 180.02562 * 7 6 4 9 9 C 1.42901 * 116.99604 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47046 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47225 * 179.97438 * 10 9 8 12 12 O 1.21440 * 119.99792 * 0.02562 * 11 10 9 13 13 C 1.41028 * 120.00082 * 179.97438 * 11 10 9 14 14 H 1.07998 * 119.99965 * 0.02562 * 13 11 10 15 15 C 1.40459 * 119.99827 * 180.02562 * 13 11 10 16 16 N 1.30519 * 120.00072 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99659 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47168 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46923 * 120.00437 * 17 15 13 20 20 H 1.48501 * 109.47043 * 240.00271 * 17 15 13 21 21 C 1.38150 * 119.97223 * 180.23551 * 2 1 3 22 22 H 1.08993 * 109.47290 * 89.99692 * 1 2 3 23 23 H 1.09000 * 109.46914 * 209.99971 * 1 2 3 24 24 H 1.09002 * 109.47052 * 329.99742 * 1 2 3 25 25 H 1.08001 * 119.94795 * 359.97438 * 3 2 1 26 26 H 1.08998 * 109.46840 * 269.97937 * 5 4 3 27 27 H 1.09003 * 109.47240 * 29.97753 * 5 4 3 28 28 H 1.08994 * 109.46878 * 149.97626 * 5 4 3 29 29 H 1.08005 * 120.02930 * 179.97438 * 6 4 3 30 30 H 1.08996 * 109.47352 * 299.99771 * 9 8 7 31 31 H 1.08999 * 109.47144 * 59.99795 * 9 8 7 32 32 H 1.08998 * 109.47592 * 300.00144 * 10 9 8 33 33 H 1.09007 * 109.46935 * 60.00317 * 10 9 8 34 34 H 0.97002 * 119.99878 * 179.97438 * 16 15 13 35 35 H 1.08006 * 120.02407 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1977 0.0000 4 6 3.5804 1.2011 -0.0005 5 6 4.3301 2.5084 0.0001 6 6 4.2752 0.0071 -0.0005 7 6 3.5844 -1.1960 -0.0005 8 8 4.2657 -2.3720 0.0000 9 6 3.4892 -3.5716 0.0005 10 6 4.4229 -4.7835 0.0004 11 6 3.6040 -6.0487 0.0016 12 8 2.3912 -5.9868 0.0020 13 6 4.2461 -7.3043 0.0012 14 1 5.3247 -7.3592 0.0004 15 6 3.4828 -8.4834 0.0018 16 7 2.1793 -8.4169 0.0022 17 14 4.3334 -10.1465 0.0019 18 1 5.8052 -9.9498 0.0020 19 1 3.9358 -10.9057 1.2148 20 1 3.9351 -10.9063 -1.2103 21 6 2.1972 -1.1967 -0.0049 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6564 2.1323 -0.0004 26 1 4.5107 2.8241 -1.0275 27 1 3.7388 3.2661 0.5143 28 1 5.2828 2.3806 0.5138 29 1 5.3552 0.0102 -0.0014 30 1 2.8604 -3.5970 0.8905 31 1 2.8604 -3.5977 -0.8894 32 1 5.0514 -4.7580 -0.8898 33 1 5.0520 -4.7576 0.8903 34 1 1.6522 -9.2312 0.0022 35 1 1.6571 -2.1320 -0.0092 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041229824.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:16 Heat of formation + Delta-G solvation = -98.462912 kcal Electronic energy + Delta-G solvation = -17042.741519 eV Core-core repulsion = 14197.354654 eV Total energy + Delta-G solvation = -2845.386865 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.23692 -39.34289 -38.51833 -34.87281 -34.48136 -33.00682 -31.34128 -29.15997 -28.09276 -27.77449 -25.09790 -22.70307 -21.80531 -20.92997 -18.85287 -18.20731 -17.24077 -17.16056 -17.03400 -16.79958 -15.35114 -15.21739 -15.02997 -14.68441 -14.53891 -14.37259 -14.03527 -13.96150 -13.37906 -13.29870 -13.27155 -12.74383 -12.70891 -12.56501 -12.35086 -12.33125 -12.16580 -11.99795 -11.72923 -11.51743 -11.01861 -9.64198 -9.61213 -9.14480 -8.36195 -7.15415 0.31308 0.45450 1.32829 1.37973 1.56384 2.11905 2.13262 2.24656 2.72304 3.30997 3.75287 3.84764 4.04110 4.05528 4.08932 4.27808 4.34146 4.38514 4.47609 4.65592 4.68378 4.75993 4.78360 4.88094 4.93585 4.97807 5.00719 5.12446 5.16892 5.29976 5.38329 5.55562 5.64194 5.89814 5.94181 6.41267 6.67564 6.71648 8.18466 8.45074 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.044478 B = 0.003979 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.376882 B = 7034.470576 C = 7632.795881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.051 4.051 3 C -0.163 4.163 4 C -0.046 4.046 5 C -0.109 4.109 6 C -0.177 4.177 7 C 0.113 3.887 8 O -0.330 6.330 9 C 0.096 3.904 10 C -0.145 4.145 11 C 0.341 3.659 12 O -0.594 6.594 13 C -0.560 4.560 14 H 0.089 0.911 15 C 0.025 3.975 16 N -0.788 5.788 17 Si 0.998 3.002 18 H -0.246 1.246 19 H -0.264 1.264 20 H -0.264 1.264 21 C -0.239 4.239 22 H 0.081 0.919 23 H 0.058 0.942 24 H 0.092 0.908 25 H 0.153 0.847 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.137 0.863 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.283 0.717 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.339 16.811 -0.060 16.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.051 4.051 3 C -0.181 4.181 4 C -0.046 4.046 5 C -0.165 4.165 6 C -0.195 4.195 7 C 0.068 3.932 8 O -0.244 6.244 9 C 0.021 3.979 10 C -0.183 4.183 11 C 0.240 3.760 12 O -0.488 6.488 13 C -0.591 4.591 14 H 0.108 0.892 15 C -0.194 4.194 16 N -0.417 5.417 17 Si 0.816 3.184 18 H -0.169 1.169 19 H -0.189 1.189 20 H -0.188 1.188 21 C -0.258 4.258 22 H 0.100 0.900 23 H 0.077 0.923 24 H 0.111 0.889 25 H 0.171 0.829 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.155 0.845 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.810 16.786 -0.056 16.884 hybrid contribution -0.021 -1.247 -0.013 1.248 sum 1.789 15.539 -0.069 15.642 Atomic orbital electron populations 1.20874 0.89280 1.03641 1.03308 1.20058 0.97455 0.92054 0.95564 1.21148 0.93617 0.97911 1.05445 1.20107 0.94050 0.95225 0.95242 1.20857 1.00095 0.91961 1.03612 1.20531 1.00726 0.89227 1.09063 1.19436 0.91163 0.86326 0.96295 1.85980 1.36915 1.12938 1.88554 1.22263 0.93636 0.81584 1.00399 1.21861 0.99477 0.93158 1.03849 1.20049 0.88597 0.89607 0.77739 1.90373 1.17454 1.89625 1.51344 1.21332 0.96110 0.92632 1.49006 0.89248 1.27286 0.95080 1.06049 0.90995 1.70087 1.08153 1.31643 1.31785 0.84972 0.79731 0.74713 0.78979 1.16930 1.18863 1.18850 1.21314 0.93350 0.99698 1.11463 0.90034 0.92257 0.88919 0.82910 0.89684 0.89502 0.90706 0.84527 0.93472 0.93469 0.89365 0.89377 0.90692 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.45 10.01 71.24 0.71 -1.73 16 2 C -0.05 -1.41 5.88 -19.88 -0.12 -1.53 16 3 C -0.16 -3.74 9.35 22.28 0.21 -3.53 16 4 C -0.05 -1.08 5.88 -19.88 -0.12 -1.19 16 5 C -0.11 -1.58 10.01 71.24 0.71 -0.87 16 6 C -0.18 -5.19 9.64 22.36 0.22 -4.98 16 7 C 0.11 4.08 6.69 22.50 0.15 4.23 16 8 O -0.33 -13.34 10.14 -92.48 -0.94 -14.28 16 9 C 0.10 4.28 4.03 71.98 0.29 4.57 16 10 C -0.15 -6.74 5.94 29.85 0.18 -6.56 16 11 C 0.34 19.69 6.90 26.37 0.18 19.88 16 12 O -0.59 -38.83 14.50 -3.53 -0.05 -38.88 16 13 C -0.56 -31.38 9.22 23.50 0.22 -31.16 16 14 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 15 C 0.03 1.36 5.50 85.43 0.47 1.83 16 16 N -0.79 -46.47 11.72 21.91 0.26 -46.21 16 17 Si 1.00 39.30 29.56 68.60 2.03 41.33 16 18 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 19 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 20 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 21 C -0.24 -8.36 8.69 22.36 0.19 -8.16 16 22 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.06 1.37 8.09 -2.39 -0.02 1.35 16 24 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 25 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.09 0.94 8.09 -2.39 -0.02 0.93 16 28 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 29 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 30 H 0.05 2.20 7.63 -2.39 -0.02 2.18 16 31 H 0.05 2.20 7.61 -2.39 -0.02 2.18 16 32 H 0.09 3.79 8.14 -2.39 -0.02 3.77 16 33 H 0.09 3.78 8.14 -2.38 -0.02 3.76 16 34 H 0.28 14.82 8.29 -92.71 -0.77 14.05 16 35 H 0.11 4.23 6.30 -2.91 -0.02 4.21 16 Total: -1.00 -71.80 303.70 5.67 -66.14 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 1.07 Total: 21.13 kcal Atomic # 6 Polarization: -32.51 SS G_CDS: 3.30 Total: -29.21 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.26 Total: -46.21 kcal Atomic # 8 Polarization: -52.18 SS G_CDS: -0.99 Total: -53.17 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -71.80 5.67 -66.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041229824.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.327 kcal (2) G-P(sol) polarization free energy of solvation -71.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds