Wall clock time and date at job start Mon Mar 30 2020 06:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35661 * 117.00012 * 2 1 4 4 C 1.39075 * 119.88783 * 0.02562 * 3 2 1 5 5 C 1.36584 * 120.24462 * 180.02562 * 4 3 2 6 6 C 1.40036 * 120.00872 * 0.02562 * 5 4 3 7 7 C 1.46856 * 120.11496 * 179.97438 * 6 5 4 8 8 O 1.21296 * 120.00274 * 180.02562 * 7 6 5 9 9 C 1.50708 * 119.99712 * 0.02562 * 7 6 5 10 10 H 1.08996 * 109.46993 * 329.99275 * 9 7 6 11 11 C 1.52997 * 109.47141 * 90.00103 * 9 7 6 12 12 C 1.50706 * 109.46685 * 209.99988 * 9 7 6 13 13 H 1.07999 * 120.00196 * 359.97438 * 12 9 7 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 9 7 15 15 N 1.31514 * 119.99350 * 179.97438 * 14 12 9 16 16 Si 1.86789 * 120.00458 * 0.02562 * 14 12 9 17 17 H 1.48500 * 109.47356 * 89.99481 * 16 14 12 18 18 H 1.48501 * 109.47162 * 209.99853 * 16 14 12 19 19 H 1.48503 * 109.47180 * 329.99546 * 16 14 12 20 20 C 1.40041 * 119.77111 * 0.22973 * 6 5 4 21 21 C 1.37648 * 119.75488 * 359.49460 * 20 6 5 22 22 C 1.50703 * 120.00412 * 180.27376 * 21 20 6 23 23 H 1.08997 * 109.47328 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46749 * 299.99366 * 1 2 3 25 25 H 1.08996 * 109.47452 * 59.99465 * 1 2 3 26 26 H 1.08004 * 119.87614 * 359.97438 * 4 3 2 27 27 H 1.07998 * 119.99076 * 179.97438 * 5 4 3 28 28 H 1.09002 * 109.47153 * 299.99670 * 11 9 7 29 29 H 1.09001 * 109.46832 * 179.97438 * 11 9 7 30 30 H 1.09004 * 109.47261 * 59.99842 * 11 9 7 31 31 H 0.97005 * 119.99656 * 180.02562 * 15 14 12 32 32 H 1.08001 * 120.12129 * 179.74771 * 20 6 5 33 33 H 1.08998 * 109.47065 * 270.25750 * 22 21 20 34 34 H 1.08999 * 109.46968 * 30.25749 * 22 21 20 35 35 H 1.09001 * 109.46989 * 150.25052 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2852 2.3736 0.0005 5 6 1.8976 3.5945 0.0000 6 6 3.2956 3.6767 -0.0016 7 6 3.9566 4.9881 -0.0027 8 8 5.1676 5.0569 -0.0046 9 6 3.1302 6.2484 -0.0016 10 1 2.1860 6.0642 -0.5140 11 6 2.8528 6.6750 1.4413 12 6 3.8827 7.3431 -0.7133 13 1 4.8616 7.1460 -1.1248 14 6 3.3214 8.5962 -0.8389 15 7 3.9784 9.5516 -1.4596 16 14 1.6287 8.9372 -0.1265 17 1 1.7674 9.4120 1.2737 18 1 0.9510 9.9799 -0.9380 19 1 0.8219 7.6906 -0.1488 20 6 4.0611 2.5040 -0.0076 21 6 3.4339 1.2787 -0.0012 22 6 4.2522 0.0133 -0.0014 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.2068 2.3127 0.0005 27 1 1.3037 4.4964 0.0000 28 1 2.3085 5.8832 1.9560 29 1 2.2555 7.5868 1.4421 30 1 3.7971 6.8592 1.9537 31 1 3.5836 10.4333 -1.5477 32 1 5.1396 2.5608 -0.0130 33 1 4.4487 -0.2922 -1.0290 34 1 5.1973 0.1917 0.5117 35 1 3.7026 -0.7749 0.5133 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050597082.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:05 Heat of formation + Delta-G solvation = -51.809994 kcal Electronic energy + Delta-G solvation = -17733.514501 eV Core-core repulsion = 14890.150658 eV Total energy + Delta-G solvation = -2843.363843 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.38008 -38.77394 -36.88304 -33.96239 -32.88774 -31.24870 -30.15493 -27.82319 -26.78132 -25.17263 -24.07920 -21.77716 -21.54441 -18.48888 -18.07494 -16.88426 -16.28720 -15.94165 -15.53682 -14.97386 -14.51545 -14.03593 -13.84841 -13.49015 -13.41524 -13.10868 -12.67975 -12.55088 -12.24076 -12.16237 -12.05146 -11.73458 -11.70969 -11.07411 -10.95093 -10.78992 -10.58812 -10.21837 -9.67047 -9.12326 -8.82851 -8.63178 -8.51304 -8.05107 -6.07762 -4.07975 1.05124 1.43889 3.03935 3.12926 3.23535 3.29737 3.35603 4.06497 4.36692 4.69922 4.75167 4.79178 4.95230 4.96688 5.22230 5.24268 5.34941 5.40270 5.54349 5.58935 5.67679 5.89086 5.99476 6.16622 6.23548 6.31949 6.35565 6.49167 6.50544 6.63512 6.76517 6.89308 7.17189 7.29185 7.61101 8.42724 8.56725 9.03279 9.51059 11.05373 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.031991 B = 0.005877 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.032883 B = 4763.478566 C = 5380.580613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.314 6.314 3 C 0.142 3.858 4 C -0.218 4.218 5 C -0.037 4.037 6 C -0.187 4.187 7 C 0.410 3.590 8 O -0.453 6.453 9 C -0.030 4.030 10 H 0.049 0.951 11 C -0.141 4.141 12 C -0.508 4.508 13 H 0.085 0.915 14 C 0.071 3.929 15 N -0.896 5.896 16 Si 0.886 3.114 17 H -0.278 1.278 18 H -0.296 1.296 19 H -0.266 1.266 20 C -0.032 4.032 21 C -0.135 4.135 22 C -0.101 4.101 23 H 0.098 0.902 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.130 0.870 27 H 0.138 0.862 28 H 0.034 0.966 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.265 0.735 32 H 0.139 0.861 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.621 -18.290 4.253 20.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.097 3.903 4 C -0.237 4.237 5 C -0.056 4.056 6 C -0.189 4.189 7 C 0.287 3.713 8 O -0.328 6.328 9 C -0.049 4.049 10 H 0.067 0.933 11 C -0.198 4.198 12 C -0.546 4.546 13 H 0.103 0.897 14 C -0.131 4.131 15 N -0.534 5.534 16 Si 0.716 3.284 17 H -0.205 1.205 18 H -0.223 1.223 19 H -0.192 1.192 20 C -0.050 4.050 21 C -0.135 4.135 22 C -0.158 4.158 23 H 0.116 0.884 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.148 0.852 27 H 0.156 0.844 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.156 0.844 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.895 -18.259 4.187 20.328 hybrid contribution -1.390 0.565 0.331 1.537 sum -9.285 -17.693 4.518 20.486 Atomic orbital electron populations 1.23073 0.78463 1.03777 1.01612 1.85987 1.21299 1.27120 1.88287 1.19093 0.91791 0.84060 0.95367 1.20926 1.00058 0.92222 1.10488 1.21146 0.93924 0.97631 0.92850 1.20926 0.94324 0.96017 1.07595 1.22627 0.89382 0.89124 0.70163 1.90405 1.16863 1.89557 1.35967 1.19599 0.97154 0.93265 0.94897 0.93281 1.22029 1.01164 0.99442 0.97174 1.20881 1.04985 0.93297 1.35399 0.89710 1.24980 0.97288 0.95970 0.94845 1.69889 1.38002 1.02938 1.42536 0.86874 0.85031 0.77962 0.78514 1.20456 1.22303 1.19155 1.21217 1.00522 0.90009 0.93250 1.19179 0.90450 0.96152 1.07769 1.20572 0.98787 0.94188 1.02225 0.88356 0.92541 0.92476 0.85210 0.84428 0.94658 0.93269 0.92243 0.92533 0.84351 0.91505 0.91584 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.80 101.05 0.99 1.19 16 2 O -0.31 -3.65 9.52 -18.68 -0.18 -3.82 16 3 C 0.14 1.92 6.67 -38.96 -0.26 1.66 16 4 C -0.22 -2.89 8.96 -39.87 -0.36 -3.25 16 5 C -0.04 -0.58 9.31 -39.51 -0.37 -0.95 16 6 C -0.19 -3.40 5.87 -105.06 -0.62 -4.02 16 7 C 0.41 9.12 6.16 -30.82 -0.19 8.93 16 8 O -0.45 -11.36 15.94 5.54 0.09 -11.27 16 9 C -0.03 -0.71 1.66 -92.92 -0.15 -0.86 16 10 H 0.05 1.10 5.51 -51.93 -0.29 0.81 16 11 C -0.14 -3.02 8.66 37.16 0.32 -2.70 16 12 C -0.51 -14.66 8.90 -34.44 -0.31 -14.97 16 13 H 0.08 2.76 7.38 -52.49 -0.39 2.37 16 14 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 15 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 16 Si 0.89 21.37 24.37 -169.99 -4.14 17.23 16 17 H -0.28 -6.52 6.87 56.52 0.39 -6.13 16 18 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.27 -5.91 6.53 56.52 0.37 -5.54 16 20 C -0.03 -0.52 9.25 -39.12 -0.36 -0.88 16 21 C -0.13 -1.90 5.89 -104.52 -0.62 -2.52 16 22 C -0.10 -1.14 9.79 36.01 0.35 -0.78 16 23 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 25 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 26 H 0.13 1.34 6.27 -52.48 -0.33 1.01 16 27 H 0.14 2.07 6.34 -52.49 -0.33 1.74 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.14 2.20 7.65 -52.49 -0.40 1.80 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.07 0.72 7.53 -51.93 -0.39 0.33 16 LS Contribution 288.86 15.07 4.35 4.35 Total: -1.00 -32.93 288.86 -5.15 -38.08 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -4.38 Total: -0.49 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -1.66 Total: -17.19 kcal Atomic # 7 Polarization: -27.66 SS G_CDS: 0.77 Total: -26.88 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.09 Total: -15.09 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.14 Total: 17.23 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.93 -5.15 -38.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050597082.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.734 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds