Wall clock time and date at job start Mon Mar 30 2020 06:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35661 * 117.00012 * 2 1 4 4 C 1.39075 * 119.88783 * 0.02562 * 3 2 1 5 5 C 1.36584 * 120.24462 * 180.02562 * 4 3 2 6 6 C 1.40036 * 120.00872 * 0.02562 * 5 4 3 7 7 C 1.46856 * 120.11496 * 179.97438 * 6 5 4 8 8 O 1.21296 * 120.00274 * 180.02562 * 7 6 5 9 9 C 1.50708 * 119.99712 * 0.02562 * 7 6 5 10 10 H 1.08996 * 109.46993 * 329.99275 * 9 7 6 11 11 C 1.52997 * 109.47141 * 90.00103 * 9 7 6 12 12 C 1.50706 * 109.46685 * 209.99988 * 9 7 6 13 13 H 1.07999 * 120.00196 * 359.97438 * 12 9 7 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 9 7 15 15 N 1.31514 * 119.99350 * 179.97438 * 14 12 9 16 16 Si 1.86789 * 120.00458 * 0.02562 * 14 12 9 17 17 H 1.48500 * 109.47356 * 89.99481 * 16 14 12 18 18 H 1.48501 * 109.47162 * 209.99853 * 16 14 12 19 19 H 1.48503 * 109.47180 * 329.99546 * 16 14 12 20 20 C 1.40041 * 119.77111 * 0.22973 * 6 5 4 21 21 C 1.37648 * 119.75488 * 359.49460 * 20 6 5 22 22 C 1.50703 * 120.00412 * 180.27376 * 21 20 6 23 23 H 1.08997 * 109.47328 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46749 * 299.99366 * 1 2 3 25 25 H 1.08996 * 109.47452 * 59.99465 * 1 2 3 26 26 H 1.08004 * 119.87614 * 359.97438 * 4 3 2 27 27 H 1.07998 * 119.99076 * 179.97438 * 5 4 3 28 28 H 1.09002 * 109.47153 * 299.99670 * 11 9 7 29 29 H 1.09001 * 109.46832 * 179.97438 * 11 9 7 30 30 H 1.09004 * 109.47261 * 59.99842 * 11 9 7 31 31 H 0.97005 * 119.99656 * 180.02562 * 15 14 12 32 32 H 1.08001 * 120.12129 * 179.74771 * 20 6 5 33 33 H 1.08998 * 109.47065 * 270.25750 * 22 21 20 34 34 H 1.08999 * 109.46968 * 30.25749 * 22 21 20 35 35 H 1.09001 * 109.46989 * 150.25052 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2852 2.3736 0.0005 5 6 1.8976 3.5945 0.0000 6 6 3.2956 3.6767 -0.0016 7 6 3.9566 4.9881 -0.0027 8 8 5.1676 5.0569 -0.0046 9 6 3.1302 6.2484 -0.0016 10 1 2.1860 6.0642 -0.5140 11 6 2.8528 6.6750 1.4413 12 6 3.8827 7.3431 -0.7133 13 1 4.8616 7.1460 -1.1248 14 6 3.3214 8.5962 -0.8389 15 7 3.9784 9.5516 -1.4596 16 14 1.6287 8.9372 -0.1265 17 1 1.7674 9.4120 1.2737 18 1 0.9510 9.9799 -0.9380 19 1 0.8219 7.6906 -0.1488 20 6 4.0611 2.5040 -0.0076 21 6 3.4339 1.2787 -0.0012 22 6 4.2522 0.0133 -0.0014 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.2068 2.3127 0.0005 27 1 1.3037 4.4964 0.0000 28 1 2.3085 5.8832 1.9560 29 1 2.2555 7.5868 1.4421 30 1 3.7971 6.8592 1.9537 31 1 3.5836 10.4333 -1.5477 32 1 5.1396 2.5608 -0.0130 33 1 4.4487 -0.2922 -1.0290 34 1 5.1973 0.1917 0.5117 35 1 3.7026 -0.7749 0.5133 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050597082.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:05 Heat of formation + Delta-G solvation = -73.864191 kcal Electronic energy + Delta-G solvation = -17734.470842 eV Core-core repulsion = 14890.150658 eV Total energy + Delta-G solvation = -2844.320184 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.49765 -40.26055 -38.07069 -35.89588 -34.14066 -33.17680 -31.36362 -28.53023 -27.87463 -27.18840 -25.57562 -23.12824 -22.79520 -20.05378 -19.18408 -18.73914 -17.54089 -17.16175 -16.77304 -16.70153 -15.72054 -15.59253 -15.26398 -14.83135 -14.68693 -14.32411 -14.27334 -13.95517 -13.71842 -13.51878 -13.00599 -12.95819 -12.81803 -12.64482 -12.57750 -12.11397 -11.96728 -11.77453 -11.49406 -11.22338 -10.78768 -10.26689 -9.94727 -9.16321 -8.30047 -6.38024 -0.23535 0.32656 1.33008 1.38556 1.50742 1.57166 2.28916 2.33372 2.78080 3.04000 3.26892 3.70329 3.81270 4.17407 4.25328 4.29144 4.41680 4.45617 4.47511 4.51499 4.61603 4.69258 4.79068 4.81877 4.83243 4.87301 5.03432 5.22538 5.24502 5.30514 5.40835 5.45552 5.59271 5.67769 6.24559 6.35125 6.69525 6.83736 7.26095 8.87768 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.031991 B = 0.005877 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.032883 B = 4763.478566 C = 5380.580613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.319 6.319 3 C 0.155 3.845 4 C -0.210 4.210 5 C -0.036 4.036 6 C -0.218 4.218 7 C 0.408 3.592 8 O -0.504 6.504 9 C -0.034 4.034 10 H 0.073 0.927 11 C -0.137 4.137 12 C -0.524 4.524 13 H 0.022 0.978 14 C 0.007 3.993 15 N -0.952 5.952 16 Si 0.958 3.042 17 H -0.264 1.264 18 H -0.296 1.296 19 H -0.224 1.224 20 C -0.040 4.040 21 C -0.142 4.142 22 C -0.099 4.099 23 H 0.123 0.877 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.168 0.832 27 H 0.148 0.852 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.268 0.732 32 H 0.127 0.873 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.771 -20.821 5.544 25.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.231 6.231 3 C 0.108 3.892 4 C -0.228 4.228 5 C -0.054 4.054 6 C -0.219 4.219 7 C 0.290 3.710 8 O -0.383 6.383 9 C -0.054 4.054 10 H 0.091 0.909 11 C -0.194 4.194 12 C -0.562 4.562 13 H 0.040 0.960 14 C -0.189 4.189 15 N -0.592 5.592 16 Si 0.782 3.218 17 H -0.190 1.190 18 H -0.224 1.224 19 H -0.147 1.147 20 C -0.058 4.058 21 C -0.143 4.143 22 C -0.156 4.156 23 H 0.141 0.859 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.185 0.815 27 H 0.165 0.835 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.145 0.855 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.066 -20.836 5.486 24.695 hybrid contribution -0.078 1.182 -0.135 1.192 sum -12.144 -19.654 5.351 23.715 Atomic orbital electron populations 1.23470 0.75984 1.05982 1.02718 1.86006 1.23770 1.25916 1.87433 1.19226 0.91670 0.85085 0.93176 1.21237 1.01864 0.90910 1.08838 1.21241 0.92508 0.99171 0.92494 1.20552 0.95658 0.93942 1.11767 1.22884 0.88715 0.90802 0.68628 1.90382 1.18740 1.90314 1.38869 1.19628 0.97417 0.92293 0.96019 0.90920 1.21949 1.01009 1.00949 0.95522 1.21067 1.03303 0.95758 1.36057 0.95992 1.26052 1.02710 0.95179 0.94989 1.70080 1.40784 1.03718 1.44584 0.85724 0.78799 0.79432 0.77867 1.18956 1.22406 1.14674 1.21187 1.00157 0.90625 0.93827 1.19415 0.91541 0.96121 1.07174 1.20618 0.98855 0.93109 1.02996 0.85874 0.91213 0.91445 0.81511 0.83470 0.90150 0.93169 0.93968 0.92318 0.85475 0.90706 0.91024 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.80 113.37 1.11 1.24 16 2 O -0.32 -6.00 9.52 -89.77 -0.85 -6.85 16 3 C 0.16 3.62 6.67 22.67 0.15 3.77 16 4 C -0.21 -4.64 8.96 22.08 0.20 -4.44 16 5 C -0.04 -1.02 9.31 22.32 0.21 -0.81 16 6 C -0.22 -7.80 5.87 -20.15 -0.12 -7.92 16 7 C 0.41 18.74 6.16 27.95 0.17 18.92 16 8 O -0.50 -27.14 15.94 -3.08 -0.05 -27.19 16 9 C -0.03 -1.62 1.66 -12.28 -0.02 -1.64 16 10 H 0.07 3.08 5.51 -2.39 -0.01 3.06 16 11 C -0.14 -5.62 8.66 71.98 0.62 -4.99 16 12 C -0.52 -31.72 8.90 25.60 0.23 -31.49 16 13 H 0.02 1.55 7.38 -2.91 -0.02 1.53 16 14 C 0.01 0.43 5.45 84.66 0.46 0.89 16 15 N -0.95 -61.44 13.96 21.45 0.30 -61.14 16 16 Si 0.96 43.12 24.37 68.60 1.67 44.80 16 17 H -0.26 -11.26 6.87 99.48 0.68 -10.58 16 18 H -0.30 -13.34 7.11 99.48 0.71 -12.63 16 19 H -0.22 -8.53 6.53 99.48 0.65 -7.88 16 20 C -0.04 -1.29 9.25 22.57 0.21 -1.08 16 21 C -0.14 -3.73 5.89 -19.80 -0.12 -3.85 16 22 C -0.10 -2.03 9.79 71.24 0.70 -1.33 16 23 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.07 0.56 7.65 -2.38 -0.02 0.55 16 25 H 0.07 0.58 7.65 -2.39 -0.02 0.57 16 26 H 0.17 2.41 6.27 -2.91 -0.02 2.40 16 27 H 0.15 3.80 6.34 -2.91 -0.02 3.78 16 28 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.05 2.03 3.27 -2.39 -0.01 2.02 16 30 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.27 15.98 8.31 -92.70 -0.77 15.21 16 32 H 0.13 4.28 7.65 -2.91 -0.02 4.25 16 33 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 1.37 8.09 -2.39 -0.02 1.35 16 35 H 0.08 1.44 7.53 -2.39 -0.02 1.42 16 Total: -1.00 -77.57 288.86 5.89 -71.68 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 1.02 Total: 11.44 kcal Atomic # 6 Polarization: -36.54 SS G_CDS: 3.80 Total: -32.73 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: 0.30 Total: -61.14 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.90 Total: -34.04 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.67 Total: 44.80 kcal Total: -77.57 5.89 -71.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050597082.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.186 kcal (2) G-P(sol) polarization free energy of solvation -77.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds