Wall clock time and date at job start Mon Mar 30 2020 06:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.46816 * 2 1 4 4 C 1.38235 * 120.00585 * 269.73121 * 3 2 1 5 5 C 1.38236 * 120.00321 * 179.79159 * 4 3 2 6 6 C 1.38239 * 119.99449 * 0.43884 * 5 4 3 7 7 C 1.50701 * 119.99353 * 179.83757 * 6 5 4 8 8 H 1.08997 * 109.46858 * 179.97438 * 7 6 5 9 9 C 1.50707 * 109.47103 * 299.97364 * 7 6 5 10 10 H 1.07998 * 119.99805 * 35.06810 * 9 7 6 11 11 C 1.37879 * 120.00103 * 215.06368 * 9 7 6 12 12 N 1.31506 * 119.99983 * 184.69808 * 11 9 7 13 13 Si 1.86798 * 119.99773 * 4.69955 * 11 9 7 14 14 H 1.48498 * 109.47225 * 84.77587 * 13 11 9 15 15 H 1.48506 * 109.46727 * 204.77358 * 13 11 9 16 16 H 1.48501 * 109.47235 * 324.77030 * 13 11 9 17 17 C 1.52995 * 109.47534 * 59.97799 * 7 6 5 18 18 C 1.50694 * 109.47285 * 66.15426 * 17 7 6 19 19 O 1.20832 * 119.99801 * 0.02562 * 18 17 7 20 20 O 1.34225 * 120.00354 * 179.97438 * 18 17 7 21 21 C 1.38231 * 120.00352 * 359.81454 * 6 5 4 22 22 C 1.38237 * 119.99484 * 90.00647 * 3 2 1 23 23 H 1.08997 * 109.47516 * 59.99329 * 1 2 3 24 24 H 1.09003 * 109.47012 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47110 * 299.99402 * 1 2 3 26 26 H 1.08997 * 109.47516 * 120.00671 * 2 1 3 27 27 H 1.09002 * 109.46394 * 240.00751 * 2 1 3 28 28 H 1.08001 * 119.99693 * 359.97438 * 4 3 2 29 29 H 1.07996 * 120.00182 * 180.27218 * 5 4 3 30 30 H 0.96997 * 120.00482 * 179.97438 * 12 11 9 31 31 H 1.08997 * 109.47068 * 186.15985 * 17 7 6 32 32 H 1.09003 * 109.46879 * 306.15525 * 17 7 6 33 33 H 0.96703 * 117.00118 * 179.97438 * 20 18 17 34 34 H 1.08002 * 119.99603 * 180.02562 * 21 6 5 35 35 H 1.08003 * 120.00582 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2679 2.0707 -1.1971 5 6 2.7245 3.3755 -1.1970 6 6 2.9541 4.0273 0.0002 7 6 3.4554 5.4485 0.0003 8 1 3.5755 5.7913 1.0279 9 6 4.7834 5.5128 -0.7093 10 1 4.9746 4.8709 -1.5565 11 6 5.7543 6.3911 -0.2769 12 7 6.8770 6.5138 -0.9505 13 14 5.4748 7.4066 1.2659 14 1 5.8585 6.6102 2.4590 15 1 6.3033 8.6376 1.2050 16 1 4.0404 7.7795 1.3599 17 6 2.4475 6.3449 -0.7218 18 6 1.1666 6.4000 0.0703 19 8 1.0700 5.7857 1.1063 20 8 0.1334 7.1323 -0.3746 21 6 2.7234 3.3757 1.1973 22 6 2.2627 2.0723 1.1972 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.8932 -0.5137 -0.8901 28 1 2.0925 1.5600 -2.1324 29 1 2.9045 3.8847 -2.1323 30 1 7.5600 7.1320 -0.6465 31 1 2.8587 7.3497 -0.8181 32 1 2.2447 5.9387 -1.7128 33 1 -0.6674 7.1365 0.1675 34 1 2.9024 3.8852 2.1326 35 1 2.0824 1.5633 2.1326 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084483968.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:39 Heat of formation + Delta-G solvation = -109.049130 kcal Electronic energy + Delta-G solvation = -18023.164895 eV Core-core repulsion = 15177.318977 eV Total energy + Delta-G solvation = -2845.845918 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.31710 -40.13461 -37.25218 -36.41750 -34.55229 -33.22640 -31.64658 -29.73290 -28.20986 -25.11460 -23.53847 -23.38255 -21.94476 -20.74056 -19.27028 -18.70976 -17.55067 -17.12730 -16.54884 -16.25721 -16.13405 -15.62817 -14.86278 -14.53847 -14.46950 -14.27566 -14.06279 -13.84924 -13.46284 -13.28421 -13.11012 -12.70036 -12.41057 -12.31357 -12.09393 -12.04180 -11.82918 -11.65622 -11.56342 -11.25435 -11.19815 -10.74286 -9.62969 -9.13107 -8.32383 -6.36465 0.67344 0.69369 1.30404 1.33677 1.35493 1.42865 2.27549 2.31101 2.99313 3.14606 3.96646 4.02080 4.17340 4.26986 4.33335 4.36430 4.53442 4.59639 4.67610 4.78185 4.80470 4.83930 5.03456 5.11832 5.14883 5.16459 5.34036 5.40792 5.46283 5.53223 5.69264 5.74008 5.85184 6.03781 6.27312 6.36771 6.71237 7.12605 7.28647 8.83169 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.020760 B = 0.007908 C = 0.006603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.438453 B = 3539.704461 C = 4239.769891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.077 4.077 3 C -0.105 4.105 4 C -0.125 4.125 5 C -0.129 4.129 6 C -0.058 4.058 7 C 0.062 3.938 8 H 0.035 0.965 9 C -0.503 4.503 10 H 0.049 0.951 11 C 0.027 3.973 12 N -0.936 5.936 13 Si 0.927 3.073 14 H -0.274 1.274 15 H -0.281 1.281 16 H -0.252 1.252 17 C -0.106 4.106 18 C 0.478 3.522 19 O -0.537 6.537 20 O -0.515 6.515 21 C -0.123 4.123 22 C -0.126 4.126 23 H 0.050 0.950 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.137 0.863 29 H 0.115 0.885 30 H 0.268 0.732 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.421 0.579 34 H 0.103 0.897 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.895 -6.632 1.863 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 C -0.105 4.105 4 C -0.143 4.143 5 C -0.147 4.147 6 C -0.058 4.058 7 C 0.043 3.957 8 H 0.053 0.947 9 C -0.541 4.541 10 H 0.067 0.933 11 C -0.172 4.172 12 N -0.575 5.575 13 Si 0.752 3.248 14 H -0.199 1.199 15 H -0.207 1.207 16 H -0.176 1.176 17 C -0.144 4.144 18 C 0.321 3.679 19 O -0.427 6.427 20 O -0.328 6.328 21 C -0.141 4.141 22 C -0.144 4.144 23 H 0.069 0.931 24 H 0.093 0.907 25 H 0.066 0.934 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.154 0.846 29 H 0.133 0.867 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.127 0.873 33 H 0.281 0.719 34 H 0.121 0.879 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.396 -6.701 1.892 15.097 hybrid contribution 0.074 0.897 0.969 1.323 sum -13.322 -5.803 2.861 14.810 Atomic orbital electron populations 1.21716 0.94196 1.02338 1.01622 1.20516 0.96548 0.90935 1.03396 1.20088 1.00330 0.97524 0.92557 1.21181 1.00380 0.94316 0.98437 1.21063 1.00468 0.95655 0.97522 1.20069 0.95565 0.96688 0.93451 1.18007 0.92466 0.89393 0.95866 0.94719 1.21031 0.97044 1.21046 1.14973 0.93305 1.25739 0.94739 0.97496 0.99241 1.69996 1.08380 1.38249 1.40856 0.86045 0.79245 0.78798 0.80725 1.19911 1.20669 1.17635 1.21913 0.88458 1.03627 1.00428 1.24035 0.85567 0.74199 0.84050 1.90657 1.83092 1.43404 1.25520 1.84548 1.26216 1.66023 1.56049 1.21035 1.00381 0.95440 0.97223 1.21138 1.00549 0.94265 0.98484 0.93114 0.90655 0.93394 0.90441 0.90257 0.84557 0.86700 0.92242 0.88277 0.87270 0.71851 0.87859 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.89 71.98 0.71 -2.02 16 2 C -0.08 -1.69 6.07 29.85 0.18 -1.51 16 3 C -0.10 -3.22 5.13 -19.87 -0.10 -3.32 16 4 C -0.13 -4.12 9.70 22.27 0.22 -3.90 16 5 C -0.13 -5.04 8.53 22.27 0.19 -4.85 16 6 C -0.06 -2.48 3.78 -19.87 -0.08 -2.55 16 7 C 0.06 2.85 1.26 -12.29 -0.02 2.84 16 8 H 0.03 1.68 4.81 -2.39 -0.01 1.67 16 9 C -0.50 -27.32 8.64 25.60 0.22 -27.10 16 10 H 0.05 2.91 7.64 -2.91 -0.02 2.89 16 11 C 0.03 1.50 5.47 84.66 0.46 1.96 16 12 N -0.94 -56.11 13.96 21.45 0.30 -55.81 16 13 Si 0.93 43.51 26.98 68.60 1.85 45.36 16 14 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 15 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 16 H -0.25 -11.16 6.83 99.48 0.68 -10.48 16 17 C -0.11 -4.20 5.17 29.84 0.15 -4.04 16 18 C 0.48 17.15 8.08 71.23 0.58 17.73 16 19 O -0.54 -21.77 15.03 21.94 0.33 -21.44 16 20 O -0.51 -14.05 13.42 -51.37 -0.69 -14.74 16 21 C -0.12 -4.97 8.70 22.27 0.19 -4.77 16 22 C -0.13 -4.28 9.70 22.27 0.22 -4.06 16 23 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 1.54 8.09 -2.39 -0.02 1.52 16 27 H 0.08 1.56 8.08 -2.39 -0.02 1.54 16 28 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 29 H 0.11 4.44 7.46 -2.91 -0.02 4.42 16 30 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 31 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 32 H 0.11 4.00 7.19 -2.39 -0.02 3.98 16 33 H 0.42 7.25 9.10 -74.06 -0.67 6.57 16 34 H 0.10 4.24 7.95 -2.91 -0.02 4.22 16 35 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -66.62 297.87 5.11 -61.51 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.39 Total: 20.73 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: 2.93 Total: -35.61 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.30 Total: -55.81 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -0.36 Total: -36.18 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.85 Total: 45.36 kcal Total: -66.62 5.11 -61.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084483968.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.537 kcal (2) G-P(sol) polarization free energy of solvation -66.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds