Wall clock time and date at job start Mon Mar 30 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38389 * 119.84917 * 2 1 4 4 C 1.37922 * 120.14726 * 179.72397 * 3 2 1 5 5 C 1.39639 * 119.85100 * 0.57321 * 4 3 2 6 6 C 1.47730 * 120.15286 * 179.68459 * 5 4 3 7 7 O 1.21473 * 120.00032 * 180.02562 * 6 5 4 8 8 O 1.34708 * 119.99632 * 0.02562 * 6 5 4 9 9 C 1.45201 * 116.99795 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47400 * 330.00536 * 9 8 6 11 11 C 1.53003 * 109.46934 * 90.00365 * 9 8 6 12 12 C 1.50702 * 109.47288 * 209.99924 * 9 8 6 13 13 H 1.08000 * 119.99964 * 0.02562 * 12 9 8 14 14 C 1.37881 * 119.99923 * 179.97438 * 12 9 8 15 15 N 1.31510 * 120.00164 * 0.02562 * 14 12 9 16 16 Si 1.86795 * 119.99698 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.47433 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47080 * 120.00225 * 16 14 12 19 19 H 1.48498 * 109.47081 * 240.00042 * 16 14 12 20 20 C 1.39609 * 119.69987 * 359.69740 * 5 4 3 21 21 C 1.37964 * 119.84901 * 0.02562 * 20 5 4 22 22 C 1.50698 * 119.92868 * 179.97438 * 21 20 5 23 23 H 1.09002 * 109.47152 * 269.72688 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.72788 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.72769 * 1 2 3 26 26 H 1.07998 * 119.92117 * 359.97438 * 3 2 1 27 27 H 1.08008 * 120.07230 * 180.26888 * 4 3 2 28 28 H 1.09006 * 109.46952 * 299.99963 * 11 9 8 29 29 H 1.09001 * 109.47431 * 59.99885 * 11 9 8 30 30 H 1.09000 * 109.47367 * 180.02562 * 11 9 8 31 31 H 0.97000 * 120.00312 * 179.97438 * 15 14 12 32 32 H 1.08007 * 120.07592 * 179.97438 * 20 5 4 33 33 H 1.08999 * 109.47024 * 270.02455 * 22 21 20 34 34 H 1.09004 * 109.47005 * 30.01996 * 22 21 20 35 35 H 1.09002 * 109.47543 * 150.01781 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5750 1.2075 0.0057 5 6 4.2764 0.0000 -0.0005 6 6 5.7537 0.0000 -0.0015 7 8 6.3610 -1.0520 -0.0074 8 8 6.4272 1.1666 0.0043 9 6 7.8772 1.0906 0.0035 10 1 8.1936 0.1802 0.5126 11 6 8.3861 1.0713 -1.4393 12 6 8.4435 2.2895 0.7199 13 1 7.7799 3.0339 1.1346 14 6 9.8087 2.4355 0.8467 15 7 10.6166 1.5288 0.3421 16 14 10.5105 3.9211 1.7352 17 1 9.3995 4.7863 2.2070 18 1 11.3131 3.4680 2.8996 19 1 11.3768 4.6900 0.8060 20 6 3.5752 -1.2072 -0.0062 21 6 2.1956 -1.2000 -0.0061 22 6 1.4369 -2.5020 -0.0128 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3633 -0.8875 -0.5181 25 1 -0.3633 0.8925 -0.5096 26 1 1.6521 2.1334 -0.0004 27 1 4.1113 2.1450 0.0101 28 1 7.9765 0.2041 -1.9574 29 1 8.0697 1.9817 -1.9484 30 1 9.4746 1.0138 -1.4399 31 1 11.5771 1.6317 0.4310 32 1 4.1115 -2.1446 -0.0115 33 1 1.2543 -2.8108 -1.0421 34 1 2.0228 -3.2666 0.4974 35 1 0.4848 -2.3705 0.5015 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113692631.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:48 Heat of formation + Delta-G solvation = -98.412268 kcal Electronic energy + Delta-G solvation = -17444.811173 eV Core-core repulsion = 14599.426504 eV Total energy + Delta-G solvation = -2845.384669 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.52895 -40.14764 -37.60751 -35.40594 -34.45340 -33.13040 -31.70975 -28.79387 -27.77440 -27.47208 -24.58092 -22.94610 -22.70100 -21.00424 -19.01455 -18.47736 -17.70603 -16.87314 -16.69557 -16.33184 -16.11172 -15.25685 -15.10000 -14.69239 -14.31070 -14.14833 -13.91013 -13.56793 -13.33881 -13.29159 -13.05332 -12.86404 -12.84548 -12.67359 -12.43670 -12.31709 -12.16225 -11.92384 -11.64697 -11.45631 -11.02828 -10.63813 -9.88425 -9.61334 -8.31495 -6.49001 -0.31356 0.34418 1.40511 1.41960 1.54853 1.56506 1.93235 2.39625 2.73441 2.99236 3.71466 3.81907 3.91626 4.00577 4.26879 4.28652 4.45472 4.62738 4.72611 4.74012 4.78264 4.83673 4.87707 4.90357 4.96011 5.08183 5.23211 5.29260 5.33881 5.40258 5.45028 5.56579 5.58582 5.85116 5.94371 6.01078 6.55783 6.87917 7.22611 8.77006 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.040637 B = 0.004698 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.869306 B = 5958.168476 C = 6380.930127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.051 4.051 3 C -0.127 4.127 4 C -0.073 4.073 5 C -0.149 4.149 6 C 0.489 3.511 7 O -0.556 6.556 8 O -0.355 6.355 9 C 0.215 3.785 10 H 0.006 0.994 11 C -0.141 4.141 12 C -0.549 4.549 13 H 0.068 0.932 14 C 0.016 3.984 15 N -0.918 5.918 16 Si 0.987 3.013 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.269 1.269 20 C -0.070 4.070 21 C -0.103 4.103 22 C -0.112 4.112 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.162 0.838 27 H 0.133 0.867 28 H 0.020 0.980 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.272 0.728 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.292 -1.886 -0.939 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.051 4.051 3 C -0.144 4.144 4 C -0.091 4.091 5 C -0.150 4.150 6 C 0.337 3.663 7 O -0.449 6.449 8 O -0.272 6.272 9 C 0.162 3.838 10 H 0.024 0.976 11 C -0.199 4.199 12 C -0.586 4.586 13 H 0.087 0.913 14 C -0.184 4.184 15 N -0.556 5.556 16 Si 0.810 3.190 17 H -0.186 1.186 18 H -0.201 1.201 19 H -0.194 1.194 20 C -0.088 4.088 21 C -0.103 4.103 22 C -0.168 4.168 23 H 0.108 0.892 24 H 0.105 0.895 25 H 0.103 0.897 26 H 0.180 0.820 27 H 0.150 0.850 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.142 0.858 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -20.884 -2.209 -0.970 21.023 hybrid contribution 1.487 0.264 0.287 1.537 sum -19.397 -1.945 -0.683 19.507 Atomic orbital electron populations 1.21005 0.87666 1.04691 1.03976 1.20526 0.98423 0.91686 0.94468 1.21369 0.92429 0.99642 1.00989 1.21586 0.95625 0.96776 0.95131 1.19267 0.87560 0.96799 1.11375 1.22009 0.90337 0.82105 0.71888 1.90711 1.71576 1.34016 1.48644 1.86521 1.25309 1.33030 1.82291 1.20425 0.70793 0.97456 0.95099 0.97621 1.21985 1.03669 0.98311 0.95928 1.21310 0.92556 1.07305 1.37440 0.91333 1.25878 0.96328 1.00236 0.95928 1.70026 1.04300 1.36026 1.45199 0.85077 0.78246 0.77725 0.77988 1.18647 1.20050 1.19447 1.21218 0.94744 0.96325 0.96504 1.20053 0.91809 0.97490 1.00986 1.20895 1.00386 0.91910 1.03630 0.89206 0.89537 0.89685 0.82049 0.84954 0.96077 0.93352 0.89794 0.91888 0.85792 0.89747 0.91469 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 9.18 71.24 0.65 -0.55 16 2 C -0.05 -0.98 5.89 -19.80 -0.12 -1.10 16 3 C -0.13 -2.79 9.68 22.23 0.22 -2.57 16 4 C -0.07 -2.25 9.62 22.53 0.22 -2.03 16 5 C -0.15 -5.54 5.87 -20.10 -0.12 -5.66 16 6 C 0.49 23.58 7.87 70.33 0.55 24.13 16 7 O -0.56 -29.84 15.61 19.92 0.31 -29.53 16 8 O -0.36 -18.58 9.12 -56.18 -0.51 -19.10 16 9 C 0.22 12.54 2.56 29.85 0.08 12.61 16 10 H 0.01 0.39 7.16 -2.39 -0.02 0.37 16 11 C -0.14 -7.67 9.33 71.98 0.67 -7.00 16 12 C -0.55 -32.24 8.90 25.60 0.23 -32.01 16 13 H 0.07 3.93 7.81 -2.91 -0.02 3.91 16 14 C 0.02 0.90 5.30 84.66 0.45 1.35 16 15 N -0.92 -53.91 11.32 21.45 0.24 -53.67 16 16 Si 0.99 43.59 29.54 68.60 2.03 45.62 16 17 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 18 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 20 C -0.07 -2.19 9.24 22.54 0.21 -1.98 16 21 C -0.10 -2.34 5.87 -19.90 -0.12 -2.46 16 22 C -0.11 -1.66 9.18 71.24 0.65 -1.01 16 23 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.09 0.67 6.68 -2.39 -0.02 0.66 16 25 H 0.08 0.67 8.08 -2.38 -0.02 0.65 16 26 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 27 H 0.13 4.19 7.61 -2.91 -0.02 4.17 16 28 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.08 4.82 6.07 -2.39 -0.01 4.80 16 31 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 32 H 0.12 4.04 7.65 -2.91 -0.02 4.02 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.03 8.08 -2.39 -0.02 1.01 16 35 H 0.09 0.94 6.68 -2.39 -0.02 0.92 16 Total: -1.00 -71.71 300.17 6.72 -64.99 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 1.08 Total: 9.96 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: 3.58 Total: -18.27 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.24 Total: -53.67 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -0.20 Total: -48.63 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -71.71 6.72 -64.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692631.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.422 kcal (2) G-P(sol) polarization free energy of solvation -71.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds