Wall clock time and date at job start Mon Mar 30 2020 06:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38265 * 120.00131 * 2 1 4 4 C 1.38212 * 120.00074 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99763 * 359.97438 * 4 3 2 6 6 C 1.38213 * 120.00189 * 359.74648 * 5 4 3 7 7 C 1.38212 * 120.00033 * 179.97438 * 2 1 3 8 8 C 1.50697 * 120.00013 * 0.02562 * 7 2 1 9 9 H 1.08997 * 110.44941 * 314.06638 * 8 7 2 10 10 O 1.44402 * 110.40313 * 76.44966 * 8 7 2 11 11 C 1.44295 * 104.60790 * 158.12688 * 10 8 7 12 12 C 1.54171 * 104.94072 * 336.36354 * 11 10 8 13 13 H 1.09000 * 110.34408 * 118.86693 * 12 11 10 14 14 C 1.53001 * 110.34467 * 241.02668 * 12 11 10 15 15 C 1.50703 * 109.47195 * 185.00468 * 14 12 11 16 16 H 1.08002 * 119.99581 * 359.97438 * 15 14 12 17 17 C 1.37871 * 120.00003 * 180.02562 * 15 14 12 18 18 N 1.31519 * 120.00367 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99918 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47264 * 59.99729 * 19 17 15 21 21 H 1.48494 * 109.47002 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46839 * 299.99837 * 19 17 15 23 23 O 1.44293 * 104.94121 * 359.97438 * 12 11 10 24 24 H 1.09001 * 109.47069 * 270.02613 * 1 2 3 25 25 H 1.09006 * 109.47063 * 30.01724 * 1 2 3 26 26 H 1.08994 * 109.47376 * 150.02222 * 1 2 3 27 27 H 1.07999 * 119.99342 * 359.97438 * 3 2 1 28 28 H 1.07995 * 119.99950 * 180.02562 * 4 3 2 29 29 H 1.08006 * 119.99687 * 180.02562 * 5 4 3 30 30 H 1.07994 * 119.99830 * 180.27296 * 6 5 4 31 31 H 1.08999 * 110.33950 * 95.22855 * 11 10 8 32 32 H 1.09000 * 110.34436 * 217.49346 * 11 10 8 33 33 H 1.09008 * 109.46922 * 305.00130 * 14 12 11 34 34 H 1.08996 * 109.47456 * 65.00149 * 14 12 11 35 35 H 0.96994 * 120.00067 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5806 -1.1969 0.0074 7 6 2.1980 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 1 0.6387 -2.4765 0.7340 10 8 0.9187 -2.7797 -1.3154 11 6 0.7085 -4.2072 -1.3294 12 6 1.6675 -4.7608 -0.2567 13 1 1.1060 -5.2665 0.5289 14 6 2.6769 -5.7206 -0.8899 15 6 3.5237 -6.3433 0.1900 16 1 3.3587 -6.0804 1.2245 17 6 4.5097 -7.2477 -0.1427 18 7 4.7110 -7.5675 -1.4024 19 14 5.5599 -8.0190 1.1959 20 1 4.6898 -8.7673 2.1382 21 1 6.5403 -8.9496 0.5812 22 1 6.2849 -6.9525 1.9323 23 8 2.3410 -3.6006 0.2746 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8899 -0.5141 26 1 -0.3634 -0.8901 -0.5134 27 1 1.6582 2.1326 -0.0004 28 1 4.1204 2.1326 0.0010 29 1 5.3517 0.0000 0.0024 30 1 4.1206 -2.1322 0.0127 31 1 -0.3244 -4.4406 -1.0712 32 1 0.9573 -4.6173 -2.3082 33 1 2.1444 -6.5032 -1.4306 34 1 3.3159 -5.1716 -1.5815 35 1 5.4049 -8.2034 -1.6365 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259969131.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:51 Heat of formation + Delta-G solvation = -76.127071 kcal Electronic energy + Delta-G solvation = -17944.540025 eV Core-core repulsion = 15100.121715 eV Total energy + Delta-G solvation = -2844.418310 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.18066 -38.71951 -34.57843 -33.31695 -32.80479 -31.68599 -30.09653 -27.08416 -26.61043 -24.74295 -23.14604 -21.73881 -20.90155 -20.21594 -16.99989 -16.67185 -16.02496 -15.61675 -15.51706 -14.96582 -14.59424 -14.39337 -13.89928 -13.55849 -13.10156 -12.84496 -12.54987 -12.25358 -12.09953 -11.92646 -11.74515 -11.42842 -11.16351 -10.94679 -10.81769 -10.60152 -10.53045 -9.97276 -9.54128 -9.10372 -9.03460 -8.68973 -8.51428 -8.38698 -6.01363 -4.02884 1.39088 1.55385 3.34572 3.38560 3.41943 3.75756 4.24811 4.30342 4.46123 4.91826 4.98758 5.16044 5.27579 5.28590 5.30699 5.35897 5.38008 5.51656 5.61915 5.71770 5.80651 5.87640 5.98806 6.12517 6.16635 6.28401 6.45548 6.58685 6.68562 6.72771 6.83040 7.14861 7.29786 7.55476 7.77901 7.95201 8.35889 9.00965 9.60360 11.10107 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.027683 B = 0.005868 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.220157 B = 4770.712651 C = 5426.241961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.065 4.065 3 C -0.133 4.133 4 C -0.113 4.113 5 C -0.133 4.133 6 C -0.073 4.073 7 C -0.089 4.089 8 C 0.264 3.736 9 H 0.073 0.927 10 O -0.378 6.378 11 C 0.017 3.983 12 C 0.056 3.944 13 H 0.072 0.928 14 C 0.024 3.976 15 C -0.513 4.513 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.897 5.897 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 O -0.354 6.354 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.140 0.860 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.033 0.967 34 H 0.029 0.971 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.231 14.571 2.334 16.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.066 4.066 3 C -0.151 4.151 4 C -0.131 4.131 5 C -0.151 4.151 6 C -0.091 4.091 7 C -0.089 4.089 8 C 0.169 3.831 9 H 0.090 0.910 10 O -0.299 6.299 11 C -0.060 4.060 12 C -0.001 4.001 13 H 0.090 0.910 14 C -0.013 4.013 15 C -0.552 4.552 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.537 5.537 19 Si 0.722 3.278 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 O -0.275 6.275 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.138 0.862 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.158 0.842 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.955 14.611 2.155 16.325 hybrid contribution 0.511 -0.630 0.732 1.093 sum -6.445 13.980 2.887 15.663 Atomic orbital electron populations 1.20882 0.91281 1.03420 1.02173 1.19667 0.96045 0.92296 0.98555 1.20902 0.94266 0.96985 1.02906 1.21141 0.94273 0.97960 0.99694 1.21178 1.00037 0.92324 1.01552 1.21245 0.93556 0.99153 0.95185 1.19405 0.94090 0.92362 1.03081 1.22888 0.88507 0.87299 0.84433 0.90990 1.89223 1.84304 1.22992 1.33414 1.24254 0.98975 0.80428 1.02360 1.23910 0.94445 0.87734 0.94054 0.91014 1.19311 0.93152 0.92444 0.96366 1.21079 1.16956 1.23811 0.93320 0.92440 1.24990 0.97284 0.96708 0.95411 1.69943 1.33086 1.34236 1.16386 0.86618 0.80167 0.79084 0.81913 1.20253 1.21312 1.20198 1.89373 1.42791 1.15870 1.79447 0.91274 0.91512 0.90610 0.86167 0.86259 0.85907 0.84209 0.91819 0.88416 0.94874 0.95275 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 9.37 36.00 0.34 -1.05 16 2 C -0.07 -0.93 5.88 -104.62 -0.62 -1.54 16 3 C -0.13 -1.65 9.70 -39.58 -0.38 -2.04 16 4 C -0.11 -1.40 10.05 -39.58 -0.40 -1.79 16 5 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 6 C -0.07 -1.26 9.39 -39.58 -0.37 -1.63 16 7 C -0.09 -1.51 5.55 -104.63 -0.58 -2.09 16 8 C 0.26 4.74 3.05 36.00 0.11 4.85 16 9 H 0.07 1.15 7.66 -51.93 -0.40 0.75 16 10 O -0.38 -7.00 10.65 -59.42 -0.63 -7.64 16 11 C 0.02 0.29 7.55 37.77 0.29 0.58 16 12 C 0.06 1.17 3.47 -26.12 -0.09 1.08 16 13 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 14 C 0.02 0.62 4.51 -27.88 -0.13 0.49 16 15 C -0.51 -14.55 9.00 -34.44 -0.31 -14.86 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 19 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 O -0.35 -7.66 9.67 -59.42 -0.57 -8.24 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 26 H 0.07 0.95 6.33 -51.93 -0.33 0.62 16 27 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 30 H 0.14 2.66 7.12 -52.49 -0.37 2.29 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.10 1.71 7.71 -51.93 -0.40 1.31 16 33 H 0.03 0.86 8.14 -51.92 -0.42 0.44 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 295.35 15.07 4.45 4.45 Total: -1.00 -31.34 295.35 -8.52 -39.87 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.84 Total: -0.42 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -2.64 Total: -18.75 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.74 Total: -26.09 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -1.21 Total: -15.87 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.34 -8.52 -39.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259969131.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.259 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds