Wall clock time and date at job start Mon Mar 30 2020 06:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38265 * 120.00131 * 2 1 4 4 C 1.38212 * 120.00074 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99763 * 359.97438 * 4 3 2 6 6 C 1.38213 * 120.00189 * 359.74648 * 5 4 3 7 7 C 1.38212 * 120.00033 * 179.97438 * 2 1 3 8 8 C 1.50697 * 120.00013 * 0.02562 * 7 2 1 9 9 H 1.08997 * 110.44941 * 314.06638 * 8 7 2 10 10 O 1.44402 * 110.40313 * 76.44966 * 8 7 2 11 11 C 1.44295 * 104.60790 * 158.12688 * 10 8 7 12 12 C 1.54171 * 104.94072 * 336.36354 * 11 10 8 13 13 H 1.09000 * 110.34408 * 118.86693 * 12 11 10 14 14 C 1.53001 * 110.34467 * 241.02668 * 12 11 10 15 15 C 1.50703 * 109.47195 * 185.00468 * 14 12 11 16 16 H 1.08002 * 119.99581 * 359.97438 * 15 14 12 17 17 C 1.37871 * 120.00003 * 180.02562 * 15 14 12 18 18 N 1.31519 * 120.00367 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99918 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47264 * 59.99729 * 19 17 15 21 21 H 1.48494 * 109.47002 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46839 * 299.99837 * 19 17 15 23 23 O 1.44293 * 104.94121 * 359.97438 * 12 11 10 24 24 H 1.09001 * 109.47069 * 270.02613 * 1 2 3 25 25 H 1.09006 * 109.47063 * 30.01724 * 1 2 3 26 26 H 1.08994 * 109.47376 * 150.02222 * 1 2 3 27 27 H 1.07999 * 119.99342 * 359.97438 * 3 2 1 28 28 H 1.07995 * 119.99950 * 180.02562 * 4 3 2 29 29 H 1.08006 * 119.99687 * 180.02562 * 5 4 3 30 30 H 1.07994 * 119.99830 * 180.27296 * 6 5 4 31 31 H 1.08999 * 110.33950 * 95.22855 * 11 10 8 32 32 H 1.09000 * 110.34436 * 217.49346 * 11 10 8 33 33 H 1.09008 * 109.46922 * 305.00130 * 14 12 11 34 34 H 1.08996 * 109.47456 * 65.00149 * 14 12 11 35 35 H 0.96994 * 120.00067 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5806 -1.1969 0.0074 7 6 2.1980 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 1 0.6387 -2.4765 0.7340 10 8 0.9187 -2.7797 -1.3154 11 6 0.7085 -4.2072 -1.3294 12 6 1.6675 -4.7608 -0.2567 13 1 1.1060 -5.2665 0.5289 14 6 2.6769 -5.7206 -0.8899 15 6 3.5237 -6.3433 0.1900 16 1 3.3587 -6.0804 1.2245 17 6 4.5097 -7.2477 -0.1427 18 7 4.7110 -7.5675 -1.4024 19 14 5.5599 -8.0190 1.1959 20 1 4.6898 -8.7673 2.1382 21 1 6.5403 -8.9496 0.5812 22 1 6.2849 -6.9525 1.9323 23 8 2.3410 -3.6006 0.2746 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8899 -0.5141 26 1 -0.3634 -0.8901 -0.5134 27 1 1.6582 2.1326 -0.0004 28 1 4.1204 2.1326 0.0010 29 1 5.3517 0.0000 0.0024 30 1 4.1206 -2.1322 0.0127 31 1 -0.3244 -4.4406 -1.0712 32 1 0.9573 -4.6173 -2.3082 33 1 2.1444 -6.5032 -1.4306 34 1 3.3159 -5.1716 -1.5815 35 1 5.4049 -8.2034 -1.6365 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259969131.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:51 Heat of formation + Delta-G solvation = -94.682975 kcal Electronic energy + Delta-G solvation = -17945.344670 eV Core-core repulsion = 15100.121715 eV Total energy + Delta-G solvation = -2845.222955 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.58299 -39.91524 -36.19465 -35.25967 -33.95797 -33.14704 -31.66122 -28.67631 -27.83750 -26.07166 -25.05750 -22.93483 -22.38678 -21.55832 -18.82386 -17.95048 -17.79414 -17.14916 -16.82083 -16.58502 -16.12556 -15.71933 -15.19059 -14.54934 -14.44191 -14.40419 -13.98743 -13.77592 -13.55797 -13.31465 -13.13760 -13.04818 -12.85016 -12.54680 -12.38438 -12.09405 -11.95078 -11.80401 -11.32733 -10.90304 -10.71797 -10.60648 -9.81782 -9.57741 -8.22667 -6.32403 0.28637 0.45334 1.37770 1.41208 1.49102 2.39132 2.55108 2.83184 3.01033 3.12538 3.73378 3.76421 3.94085 3.96496 4.06957 4.10828 4.20374 4.42457 4.47012 4.55777 4.63500 4.80843 4.84155 4.86824 4.93190 5.05180 5.09149 5.31347 5.31844 5.43639 5.54261 5.60459 5.68389 5.73162 6.04571 6.08474 6.21246 6.79242 7.35360 8.89070 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.027683 B = 0.005868 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.220157 B = 4770.712651 C = 5426.241961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.070 4.070 3 C -0.127 4.127 4 C -0.105 4.105 5 C -0.141 4.141 6 C -0.106 4.106 7 C -0.119 4.119 8 C 0.263 3.737 9 H 0.096 0.904 10 O -0.387 6.387 11 C 0.023 3.977 12 C 0.057 3.943 13 H 0.085 0.915 14 C 0.030 3.970 15 C -0.534 4.534 16 H 0.055 0.945 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.964 3.036 20 H -0.263 1.263 21 H -0.280 1.280 22 H -0.274 1.274 23 O -0.384 6.384 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.061 0.939 27 H 0.158 0.842 28 H 0.157 0.843 29 H 0.136 0.864 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.023 0.977 34 H -0.009 1.009 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.272 16.631 3.451 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.070 4.070 3 C -0.145 4.145 4 C -0.122 4.122 5 C -0.159 4.159 6 C -0.125 4.125 7 C -0.120 4.120 8 C 0.169 3.831 9 H 0.113 0.887 10 O -0.308 6.308 11 C -0.053 4.053 12 C 0.000 4.000 13 H 0.102 0.898 14 C -0.007 4.007 15 C -0.572 4.572 16 H 0.073 0.927 17 C -0.195 4.195 18 N -0.572 5.572 19 Si 0.788 3.212 20 H -0.188 1.188 21 H -0.205 1.205 22 H -0.199 1.199 23 O -0.305 6.305 24 H 0.104 0.896 25 H 0.109 0.891 26 H 0.080 0.920 27 H 0.176 0.824 28 H 0.174 0.826 29 H 0.154 0.846 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.110 0.890 33 H 0.041 0.959 34 H 0.009 0.991 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.012 16.677 3.275 18.789 hybrid contribution 0.844 -1.178 0.358 1.493 sum -7.167 15.499 3.634 17.458 Atomic orbital electron populations 1.20930 0.89273 1.03935 1.03409 1.20022 0.97608 0.91752 0.97654 1.21385 0.94499 0.97750 1.00856 1.21573 0.94680 0.98413 0.97554 1.21386 1.00919 0.92129 1.01430 1.21118 0.94199 0.98948 0.98205 1.19539 0.94049 0.93023 1.05340 1.23168 0.88678 0.86806 0.84461 0.88690 1.89202 1.84370 1.23123 1.34127 1.24246 1.00144 0.79944 1.00955 1.23728 0.93677 0.87347 0.95260 0.89753 1.19137 0.93485 0.92798 0.95313 1.21447 1.17781 1.24144 0.93779 0.92687 1.25905 0.98592 0.97210 0.97833 1.70068 1.33828 1.34885 1.18440 0.85524 0.78453 0.78212 0.79012 1.18773 1.20521 1.19926 1.89345 1.44546 1.16992 1.79665 0.89575 0.89118 0.91962 0.82406 0.82566 0.84571 0.87998 0.87679 0.88978 0.95857 0.99063 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 9.37 71.24 0.67 -1.71 16 2 C -0.07 -1.84 5.88 -19.86 -0.12 -1.96 16 3 C -0.13 -2.72 9.70 22.27 0.22 -2.50 16 4 C -0.10 -2.28 10.05 22.27 0.22 -2.05 16 5 C -0.14 -3.93 10.05 22.27 0.22 -3.71 16 6 C -0.11 -3.82 9.39 22.27 0.21 -3.61 16 7 C -0.12 -4.06 5.55 -19.87 -0.11 -4.17 16 8 C 0.26 9.52 3.05 71.24 0.22 9.74 16 9 H 0.10 2.94 7.66 -2.39 -0.02 2.92 16 10 O -0.39 -14.30 10.65 -125.85 -1.34 -15.64 16 11 C 0.02 0.82 7.55 72.38 0.55 1.37 16 12 C 0.06 2.46 3.47 30.99 0.11 2.57 16 13 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 14 C 0.03 1.60 4.51 29.85 0.13 1.73 16 15 C -0.53 -31.25 9.00 25.60 0.23 -31.02 16 16 H 0.05 3.17 7.74 -2.91 -0.02 3.15 16 17 C 0.00 0.14 5.46 84.65 0.46 0.60 16 18 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 19 Si 0.96 45.42 29.54 68.60 2.03 47.44 16 20 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 23 O -0.38 -17.32 9.67 -125.85 -1.22 -18.54 16 24 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.09 1.37 8.09 -2.38 -0.02 1.35 16 26 H 0.06 1.43 6.33 -2.39 -0.02 1.41 16 27 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 28 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 29 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 30 H 0.10 4.31 7.12 -2.91 -0.02 4.29 16 31 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.09 3.30 7.71 -2.39 -0.02 3.28 16 33 H 0.02 1.27 8.14 -2.38 -0.02 1.25 16 34 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 35 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -70.65 295.35 3.83 -66.82 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 1.07 Total: 11.71 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 3.01 Total: -34.73 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.28 Total: -57.06 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -2.56 Total: -34.18 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -70.65 3.83 -66.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259969131.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.866 kcal (2) G-P(sol) polarization free energy of solvation -70.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds