Wall clock time and date at job start Mon Mar 30 2020 05:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38236 * 119.96692 * 2 1 4 4 C 1.38211 * 120.11358 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.94291 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47466 * 89.99640 * 5 4 3 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99594 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99875 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47061 * 90.00257 * 11 9 7 13 13 H 1.48497 * 109.46906 * 209.99430 * 11 9 7 14 14 H 1.48498 * 109.47403 * 329.99876 * 11 9 7 15 15 C 1.38237 * 120.11292 * 0.32721 * 4 3 2 16 16 C 1.38661 * 120.05901 * 359.41612 * 15 4 3 17 17 C 1.38661 * 119.96218 * 179.97438 * 2 1 3 18 18 O 1.36102 * 119.40856 * 359.62870 * 17 2 1 19 19 C 1.43169 * 116.71853 * 162.99154 * 18 17 2 20 20 C 1.53469 * 108.26495 * 46.15684 * 19 18 17 21 21 O 1.36118 * 119.39384 * 180.13219 * 16 15 4 22 22 H 1.09000 * 109.47094 * 90.00046 * 1 2 3 23 23 H 1.08994 * 109.47389 * 210.00307 * 1 2 3 24 24 H 1.09003 * 109.46999 * 330.00324 * 1 2 3 25 25 H 1.08002 * 119.94323 * 359.97438 * 3 2 1 26 26 H 1.09002 * 109.47120 * 329.99393 * 5 4 3 27 27 H 1.08998 * 109.46862 * 210.00195 * 5 4 3 28 28 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 29 29 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 30 30 H 0.97002 * 119.99739 * 180.02562 * 10 9 7 31 31 H 1.07995 * 119.97082 * 179.71070 * 15 4 3 32 32 H 1.09004 * 109.69639 * 286.47028 * 19 18 17 33 33 H 1.08995 * 109.74781 * 165.87613 * 19 18 17 34 34 H 1.08997 * 109.71221 * 180.58963 * 20 19 18 35 35 H 1.08999 * 109.74851 * 59.98258 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.1976 0.0000 4 6 3.5797 1.2011 -0.0005 5 6 4.3285 2.5088 0.0001 6 6 4.5824 2.9506 1.4427 7 6 5.3319 4.2580 1.4432 8 1 5.5998 4.7272 0.5081 9 6 5.6745 4.8557 2.6375 10 7 6.3280 5.9970 2.6379 11 14 5.2103 4.0445 4.2549 12 1 6.3024 3.1338 4.6832 13 1 5.0019 5.0884 5.2903 14 1 3.9581 3.2665 4.0771 15 6 4.2763 0.0071 -0.0079 16 6 3.5897 -1.1976 -0.0025 17 6 2.1996 -1.2013 0.0005 18 8 1.5062 -2.3724 0.0087 19 6 2.2284 -3.5507 -0.3650 20 6 3.5734 -3.5453 0.3741 21 8 4.2892 -2.3653 -0.0072 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6561 2.1320 -0.0004 26 1 3.7366 3.2667 -0.5131 27 1 5.2811 2.3822 -0.5143 28 1 5.1744 2.1927 1.9559 29 1 3.6297 3.0772 1.9569 30 1 6.5694 6.4173 3.4782 31 1 5.3562 0.0126 -0.0130 32 1 2.4006 -3.5501 -1.4414 33 1 1.6585 -4.4365 -0.0846 34 1 4.1482 -4.4292 0.0979 35 1 3.4020 -3.5398 1.4505 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260016185.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:27 Heat of formation + Delta-G solvation = -66.457493 kcal Electronic energy + Delta-G solvation = -17711.183412 eV Core-core repulsion = 14867.184406 eV Total energy + Delta-G solvation = -2843.999006 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.17751 -38.09662 -37.23632 -34.15653 -32.42441 -31.63377 -30.25738 -28.18052 -26.89154 -25.46951 -24.07272 -21.41405 -21.03603 -19.67213 -18.39467 -17.29342 -16.97359 -16.56623 -15.37881 -15.05022 -14.39524 -14.34705 -14.24779 -13.93326 -13.51751 -13.25984 -12.81892 -12.68774 -12.61201 -12.13357 -11.74329 -11.70578 -11.39930 -11.11081 -10.91880 -10.76314 -10.37532 -9.99270 -9.80169 -9.64134 -9.16889 -8.51761 -8.18176 -7.72467 -6.02648 -4.00668 1.51278 1.56477 3.05800 3.24578 3.33472 3.40672 3.46133 3.92297 4.16447 4.47820 4.66873 4.69829 4.76418 5.06399 5.15561 5.30106 5.31977 5.34163 5.56438 5.62067 5.71274 5.77781 5.83708 6.16012 6.29906 6.36217 6.46798 6.51568 6.75124 6.93034 6.99485 7.01450 7.31529 7.46846 7.54738 7.80578 8.54860 9.02182 9.60130 11.10729 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.029872 B = 0.005344 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.103226 B = 5238.545132 C = 5501.323121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.080 4.080 3 C -0.118 4.118 4 C -0.051 4.051 5 C -0.068 4.068 6 C -0.007 4.007 7 C -0.521 4.521 8 H 0.073 0.927 9 C 0.068 3.932 10 N -0.904 5.904 11 Si 0.877 3.123 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.264 1.264 15 C -0.120 4.120 16 C 0.052 3.948 17 C 0.028 3.972 18 O -0.308 6.308 19 C 0.022 3.978 20 C 0.021 3.979 21 O -0.309 6.309 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.132 0.868 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.013 0.987 29 H 0.018 0.982 30 H 0.263 0.737 31 H 0.134 0.866 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.029 -19.131 -5.803 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.081 4.081 3 C -0.136 4.136 4 C -0.051 4.051 5 C -0.105 4.105 6 C -0.044 4.044 7 C -0.559 4.559 8 H 0.091 0.909 9 C -0.133 4.133 10 N -0.543 5.543 11 Si 0.704 3.296 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.189 1.189 15 C -0.138 4.138 16 C 0.008 3.992 17 C -0.016 4.016 18 O -0.223 6.223 19 C -0.054 4.054 20 C -0.055 4.055 21 O -0.224 6.224 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.150 0.850 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.031 0.969 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.152 0.848 32 H 0.091 0.909 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.956 -19.055 -5.683 22.237 hybrid contribution -0.033 -0.642 0.988 1.178 sum -9.989 -19.696 -4.696 22.578 Atomic orbital electron populations 1.20594 0.90587 1.02674 1.02084 1.19199 0.96255 0.89897 1.02701 1.20828 0.93707 0.96771 1.02288 1.20134 0.93555 0.95596 0.95858 1.20620 0.98610 0.90759 1.00522 1.19562 0.96806 0.96720 0.91306 1.21148 1.35612 1.04570 0.94535 0.90879 1.25000 0.94564 0.94670 0.99103 1.69914 1.40082 1.17428 1.26855 0.86814 0.79736 0.79316 0.83703 1.20296 1.21376 1.18905 1.20371 1.00514 0.88667 1.04290 1.18843 0.89177 0.86642 1.04544 1.18538 0.89105 0.86255 1.07695 1.86245 1.37501 1.13549 1.85021 1.23536 0.93911 0.88044 0.99897 1.23564 0.93981 0.87980 0.99994 1.86311 1.37685 1.13819 1.84558 0.91479 0.91441 0.91411 0.85007 0.91296 0.91460 0.96889 0.96384 0.92748 0.84841 0.90875 0.86560 0.86491 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 9.78 36.01 0.35 -0.89 16 2 C -0.08 -1.22 5.89 -104.46 -0.62 -1.84 16 3 C -0.12 -1.93 9.34 -39.59 -0.37 -2.30 16 4 C -0.05 -0.92 5.13 -104.63 -0.54 -1.46 16 5 C -0.07 -1.36 5.28 -27.89 -0.15 -1.51 16 6 C -0.01 -0.16 4.02 -27.88 -0.11 -0.27 16 7 C -0.52 -14.91 9.66 -34.44 -0.33 -15.24 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 10 N -0.90 -28.07 13.96 55.43 0.77 -27.29 16 11 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 15 C -0.12 -2.09 9.61 -39.43 -0.38 -2.47 16 16 C 0.05 0.86 6.49 -39.14 -0.25 0.60 16 17 C 0.03 0.44 6.47 -39.14 -0.25 0.19 16 18 O -0.31 -4.14 9.40 -32.84 -0.31 -4.45 16 19 C 0.02 0.21 7.26 37.40 0.27 0.48 16 20 C 0.02 0.21 7.26 37.40 0.27 0.48 16 21 O -0.31 -4.52 10.42 -32.89 -0.34 -4.87 16 22 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 0.79 7.49 -51.93 -0.39 0.41 16 24 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 25 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 26 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 27 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 28 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 29 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 293.31 15.07 4.42 4.42 Total: -1.00 -32.66 293.31 -7.29 -39.96 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -4.96 Total: -2.89 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -2.20 Total: -22.33 kcal Atomic # 7 Polarization: -28.07 SS G_CDS: 0.77 Total: -27.29 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.65 Total: -9.32 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.66 -7.29 -39.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260016185.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.502 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds