Wall clock time and date at job start Mon Mar 30 2020 05:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38236 * 119.96692 * 2 1 4 4 C 1.38211 * 120.11358 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.94291 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47466 * 89.99640 * 5 4 3 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99594 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99875 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47061 * 90.00257 * 11 9 7 13 13 H 1.48497 * 109.46906 * 209.99430 * 11 9 7 14 14 H 1.48498 * 109.47403 * 329.99876 * 11 9 7 15 15 C 1.38237 * 120.11292 * 0.32721 * 4 3 2 16 16 C 1.38661 * 120.05901 * 359.41612 * 15 4 3 17 17 C 1.38661 * 119.96218 * 179.97438 * 2 1 3 18 18 O 1.36102 * 119.40856 * 359.62870 * 17 2 1 19 19 C 1.43169 * 116.71853 * 162.99154 * 18 17 2 20 20 C 1.53469 * 108.26495 * 46.15684 * 19 18 17 21 21 O 1.36118 * 119.39384 * 180.13219 * 16 15 4 22 22 H 1.09000 * 109.47094 * 90.00046 * 1 2 3 23 23 H 1.08994 * 109.47389 * 210.00307 * 1 2 3 24 24 H 1.09003 * 109.46999 * 330.00324 * 1 2 3 25 25 H 1.08002 * 119.94323 * 359.97438 * 3 2 1 26 26 H 1.09002 * 109.47120 * 329.99393 * 5 4 3 27 27 H 1.08998 * 109.46862 * 210.00195 * 5 4 3 28 28 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 29 29 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 30 30 H 0.97002 * 119.99739 * 180.02562 * 10 9 7 31 31 H 1.07995 * 119.97082 * 179.71070 * 15 4 3 32 32 H 1.09004 * 109.69639 * 286.47028 * 19 18 17 33 33 H 1.08995 * 109.74781 * 165.87613 * 19 18 17 34 34 H 1.08997 * 109.71221 * 180.58963 * 20 19 18 35 35 H 1.08999 * 109.74851 * 59.98258 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.1976 0.0000 4 6 3.5797 1.2011 -0.0005 5 6 4.3285 2.5088 0.0001 6 6 4.5824 2.9506 1.4427 7 6 5.3319 4.2580 1.4432 8 1 5.5998 4.7272 0.5081 9 6 5.6745 4.8557 2.6375 10 7 6.3280 5.9970 2.6379 11 14 5.2103 4.0445 4.2549 12 1 6.3024 3.1338 4.6832 13 1 5.0019 5.0884 5.2903 14 1 3.9581 3.2665 4.0771 15 6 4.2763 0.0071 -0.0079 16 6 3.5897 -1.1976 -0.0025 17 6 2.1996 -1.2013 0.0005 18 8 1.5062 -2.3724 0.0087 19 6 2.2284 -3.5507 -0.3650 20 6 3.5734 -3.5453 0.3741 21 8 4.2892 -2.3653 -0.0072 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6561 2.1320 -0.0004 26 1 3.7366 3.2667 -0.5131 27 1 5.2811 2.3822 -0.5143 28 1 5.1744 2.1927 1.9559 29 1 3.6297 3.0772 1.9569 30 1 6.5694 6.4173 3.4782 31 1 5.3562 0.0126 -0.0130 32 1 2.4006 -3.5501 -1.4414 33 1 1.6585 -4.4365 -0.0846 34 1 4.1482 -4.4292 0.0979 35 1 3.4020 -3.5398 1.4505 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260016185.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:26 Heat of formation + Delta-G solvation = -86.233754 kcal Electronic energy + Delta-G solvation = -17712.040975 eV Core-core repulsion = 14867.184406 eV Total energy + Delta-G solvation = -2844.856569 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.23510 -39.29074 -38.27233 -35.88554 -34.20965 -32.85667 -31.58766 -29.50474 -27.96479 -27.01270 -25.29218 -23.02468 -22.24303 -21.03522 -19.45454 -18.95340 -18.28992 -17.90278 -16.44091 -16.32834 -16.03301 -15.50337 -15.37074 -15.21885 -14.73917 -14.69909 -14.44640 -14.19768 -13.68420 -13.57717 -13.12846 -12.97890 -12.75296 -12.63795 -12.25781 -11.89769 -11.83150 -11.65328 -11.43823 -11.38877 -11.23737 -10.76510 -9.37902 -8.94243 -8.29514 -6.33070 0.28515 0.32919 1.34830 1.36020 1.48753 2.07180 2.30939 2.35666 2.68135 3.05987 3.32587 3.67848 3.88831 3.95951 4.08351 4.16783 4.32619 4.39036 4.48498 4.56640 4.61479 4.66135 4.74162 4.84377 4.88831 5.01745 5.09976 5.26204 5.33000 5.43654 5.43787 5.62666 5.74290 5.79105 5.94399 6.28221 6.44752 6.74443 7.31566 8.87192 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.029872 B = 0.005344 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.103226 B = 5238.545132 C = 5501.323121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.084 4.084 3 C -0.124 4.124 4 C -0.068 4.068 5 C -0.057 4.057 6 C -0.001 4.001 7 C -0.531 4.531 8 H 0.038 0.962 9 C 0.008 3.992 10 N -0.949 5.949 11 Si 0.945 3.055 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.250 1.250 15 C -0.137 4.137 16 C 0.046 3.954 17 C 0.029 3.971 18 O -0.315 6.315 19 C 0.016 3.984 20 C 0.011 3.989 21 O -0.326 6.326 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.142 0.858 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.012 0.988 29 H 0.020 0.980 30 H 0.267 0.733 31 H 0.129 0.871 32 H 0.079 0.921 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.897 -21.899 -5.200 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.069 4.069 5 C -0.095 4.095 6 C -0.038 4.038 7 C -0.569 4.569 8 H 0.056 0.944 9 C -0.189 4.189 10 N -0.590 5.590 11 Si 0.768 3.232 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.174 1.174 15 C -0.155 4.155 16 C 0.002 3.998 17 C -0.015 4.015 18 O -0.230 6.230 19 C -0.058 4.058 20 C -0.063 4.063 21 O -0.242 6.242 22 H 0.100 0.900 23 H 0.090 0.910 24 H 0.097 0.903 25 H 0.160 0.840 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.030 0.970 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.147 0.853 32 H 0.097 0.903 33 H 0.174 0.826 34 H 0.172 0.828 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.832 -21.850 -5.095 25.365 hybrid contribution 0.557 0.101 0.705 0.904 sum -11.276 -21.748 -4.390 24.888 Atomic orbital electron populations 1.20645 0.88221 1.03444 1.03260 1.19554 0.97983 0.89393 1.01557 1.20971 0.93088 0.97920 1.02232 1.19881 0.94238 0.94461 0.98286 1.20381 0.98936 0.92332 0.97838 1.19456 0.95924 0.94291 0.94144 1.21487 1.35811 1.06264 0.93326 0.94408 1.25928 0.94496 0.95212 1.03216 1.70056 1.41656 1.19196 1.28114 0.85738 0.80109 0.78574 0.78765 1.19417 1.20588 1.17368 1.20394 1.00469 0.89360 1.05296 1.18873 0.89679 0.87020 1.04270 1.18683 0.88886 0.87409 1.06560 1.86234 1.38069 1.13814 1.84855 1.23929 0.93964 0.87674 1.00275 1.23982 0.94761 0.87290 1.00281 1.86282 1.38866 1.14449 1.84563 0.89989 0.90954 0.90340 0.83977 0.91129 0.91988 0.96979 0.96164 0.92447 0.85342 0.90306 0.82561 0.82849 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.12 9.78 71.24 0.70 -1.43 16 2 C -0.08 -2.41 5.89 -19.76 -0.12 -2.53 16 3 C -0.12 -3.93 9.34 22.26 0.21 -3.72 16 4 C -0.07 -2.45 5.13 -19.87 -0.10 -2.55 16 5 C -0.06 -2.34 5.28 29.85 0.16 -2.19 16 6 C 0.00 -0.04 4.02 29.85 0.12 0.08 16 7 C -0.53 -31.22 9.66 25.60 0.25 -30.97 16 8 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 9 C 0.01 0.50 5.47 84.66 0.46 0.96 16 10 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 11 Si 0.94 45.54 27.47 68.60 1.88 47.42 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 13 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 14 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 15 C -0.14 -4.76 9.61 22.37 0.22 -4.55 16 16 C 0.05 1.47 6.49 22.56 0.15 1.62 16 17 C 0.03 0.86 6.47 22.56 0.15 1.01 16 18 O -0.31 -7.53 9.40 -82.50 -0.78 -8.31 16 19 C 0.02 0.25 7.26 72.14 0.52 0.77 16 20 C 0.01 0.19 7.26 72.14 0.52 0.72 16 21 O -0.33 -9.05 10.42 -82.69 -0.86 -9.91 16 22 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.07 1.48 7.49 -2.39 -0.02 1.46 16 24 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 25 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 26 H 0.07 2.79 8.08 -2.39 -0.02 2.77 16 27 H 0.06 2.53 8.08 -2.39 -0.02 2.51 16 28 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 29 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 30 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 31 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.15 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -71.40 293.31 4.79 -66.61 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 1.02 Total: 6.98 kcal Atomic # 6 Polarization: -46.00 SS G_CDS: 3.23 Total: -42.77 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: 0.30 Total: -60.03 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -1.64 Total: -18.22 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.42 kcal Total: -71.40 4.79 -66.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260016185.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.621 kcal (2) G-P(sol) polarization free energy of solvation -71.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds