Wall clock time and date at job start Mon Mar 30 2020 05:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38555 * 119.98499 * 2 1 4 4 C 1.39268 * 119.82694 * 180.27755 * 3 2 1 5 5 C 1.38549 * 119.82374 * 359.74898 * 4 3 2 6 6 C 1.38237 * 120.03501 * 0.02562 * 5 4 3 7 7 C 1.38238 * 119.98786 * 179.79942 * 2 1 3 8 8 C 1.50693 * 119.92675 * 359.97438 * 7 2 1 9 9 C 1.53003 * 109.47180 * 302.19760 * 8 7 2 10 10 C 1.52995 * 109.47393 * 182.19642 * 8 7 2 11 11 C 1.50709 * 109.47197 * 62.19795 * 8 7 2 12 12 H 1.08000 * 119.99775 * 358.16768 * 11 8 7 13 13 C 1.37872 * 120.00174 * 178.17514 * 11 8 7 14 14 N 1.31518 * 120.00024 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 119.99999 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.47001 * 59.99772 * 15 13 11 17 17 H 1.48500 * 109.46962 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.46929 * 299.99608 * 15 13 11 19 19 O 1.36500 * 108.64017 * 179.75042 * 4 3 2 20 20 C 1.43986 * 105.48279 * 17.27959 * 19 4 3 21 21 O 1.36498 * 131.53096 * 359.96416 * 3 2 1 22 22 H 1.09009 * 109.46681 * 268.63822 * 1 2 3 23 23 H 1.09003 * 109.47658 * 28.63487 * 1 2 3 24 24 H 1.08997 * 109.47386 * 148.64420 * 1 2 3 25 25 H 1.08004 * 119.98050 * 179.97438 * 5 4 3 26 26 H 1.07998 * 119.93145 * 179.97438 * 6 5 4 27 27 H 1.08995 * 109.46956 * 308.40298 * 9 8 7 28 28 H 1.09005 * 109.46781 * 188.40093 * 9 8 7 29 29 H 1.09002 * 109.47201 * 68.41083 * 9 8 7 30 30 H 1.09004 * 109.47414 * 180.02562 * 10 8 7 31 31 H 1.09004 * 109.47115 * 300.00398 * 10 8 7 32 32 H 1.09001 * 109.46935 * 59.99892 * 10 8 7 33 33 H 0.97004 * 120.00166 * 180.02562 * 14 13 11 34 34 H 1.09007 * 110.57325 * 91.44759 * 20 19 4 35 35 H 1.09002 * 110.57486 * 214.16507 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1994 1.2001 0.0000 4 6 3.5921 1.1963 -0.0059 5 6 4.2778 -0.0076 -0.0064 6 6 3.5804 -1.2012 -0.0016 7 6 2.1979 -1.1973 0.0042 8 6 1.4425 -2.5012 0.0093 9 6 0.5222 -2.5527 1.2306 10 6 2.4340 -3.6649 0.0686 11 6 0.6167 -2.6084 -1.2468 12 1 0.6139 -1.7990 -1.9619 13 6 -0.1353 -3.7396 -1.4831 14 7 -0.1316 -4.7254 -0.6125 15 14 -1.1593 -3.8720 -3.0398 16 1 -0.2711 -3.7773 -4.2261 17 1 -1.8688 -5.1765 -3.0560 18 1 -2.1516 -2.7679 -3.0749 19 8 4.0319 2.4885 -0.0102 20 6 2.9032 3.2801 0.4052 21 8 1.7666 2.4947 -0.0006 22 1 -0.3633 -0.0244 1.0275 23 1 -0.3634 0.9020 -0.4925 24 1 -0.3634 -0.8775 -0.5347 25 1 5.3578 -0.0135 -0.0113 26 1 4.1166 -2.1386 -0.0025 27 1 1.0972 -2.3266 2.1285 28 1 0.0893 -3.5493 1.3175 29 1 -0.2756 -1.8189 1.1155 30 1 1.8876 -4.6081 0.0718 31 1 3.0897 -3.6282 -0.8015 32 1 3.0313 -3.5874 0.9771 33 1 -0.6604 -5.5214 -0.7789 34 1 2.9081 3.4163 1.4867 35 1 2.9051 4.2453 -0.1012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260117708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:54 Heat of formation + Delta-G solvation = -37.159141 kcal Electronic energy + Delta-G solvation = -18691.478495 eV Core-core repulsion = 15848.749961 eV Total energy + Delta-G solvation = -2842.728534 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.69657 -38.46484 -35.88922 -34.79084 -31.90251 -31.29880 -28.33331 -26.67072 -25.52497 -25.23732 -25.12970 -22.43429 -21.03960 -19.47472 -17.24055 -16.91714 -16.59913 -16.11902 -15.54078 -14.75315 -13.90882 -13.82733 -13.62173 -13.02262 -12.90052 -12.83023 -12.56782 -12.05973 -11.75450 -11.65875 -11.24821 -10.94018 -10.87593 -10.70159 -10.52940 -10.48616 -10.28434 -10.06276 -9.50661 -9.35844 -8.84134 -8.37677 -7.85418 -7.36950 -6.03153 -4.11858 1.81410 1.88649 3.20345 3.28886 3.33786 3.37684 3.83587 4.23474 4.41563 4.89213 5.05357 5.08304 5.21499 5.59035 5.68794 5.80038 5.93086 6.04298 6.32287 6.43841 6.57158 6.69920 6.72388 6.77605 6.82440 6.95795 7.00528 7.15944 7.21807 7.34221 7.38173 7.62274 7.67117 7.75801 8.01693 8.15142 8.37549 8.86083 9.51168 10.97472 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.030960 B = 0.007381 C = 0.006756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.165523 B = 3792.466877 C = 4143.408268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.052 4.052 3 C 0.019 3.981 4 C -0.001 4.001 5 C -0.109 4.109 6 C -0.122 4.122 7 C -0.020 4.020 8 C 0.101 3.899 9 C -0.136 4.136 10 C -0.136 4.136 11 C -0.502 4.502 12 H 0.060 0.940 13 C 0.069 3.931 14 N -0.882 5.882 15 Si 0.889 3.111 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 O -0.319 6.319 20 C 0.214 3.786 21 O -0.312 6.312 22 H 0.061 0.939 23 H 0.045 0.955 24 H 0.121 0.879 25 H 0.123 0.877 26 H 0.138 0.862 27 H 0.008 0.992 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.030 0.970 32 H 0.012 0.988 33 H 0.261 0.739 34 H 0.074 0.926 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.390 8.683 3.055 10.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.052 4.052 3 C -0.025 4.025 4 C -0.045 4.045 5 C -0.128 4.128 6 C -0.140 4.140 7 C -0.020 4.020 8 C 0.101 3.899 9 C -0.194 4.194 10 C -0.194 4.194 11 C -0.540 4.540 12 H 0.078 0.922 13 C -0.133 4.133 14 N -0.520 5.520 15 Si 0.717 3.283 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 O -0.236 6.236 20 C 0.102 3.898 21 O -0.229 6.229 22 H 0.080 0.920 23 H 0.064 0.936 24 H 0.139 0.861 25 H 0.140 0.860 26 H 0.156 0.844 27 H 0.027 0.973 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.049 0.951 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.296 8.694 2.979 10.145 hybrid contribution -0.363 0.334 -0.803 0.943 sum 3.933 9.028 2.176 10.085 Atomic orbital electron populations 1.21286 0.90484 1.04539 1.02171 1.18868 0.96938 0.87808 1.01631 1.19670 0.91392 0.85002 1.06401 1.19630 0.91623 0.85171 1.08048 1.19969 0.99470 0.88394 1.04954 1.21071 0.94323 0.96746 1.01829 1.20390 0.92918 0.95687 0.92997 1.17209 0.91781 0.85707 0.95229 1.22033 0.99005 1.03471 0.94882 1.21942 0.97839 1.03134 0.96449 1.20937 1.26383 1.02449 1.04216 0.92215 1.24888 0.96543 0.95556 0.96351 1.69815 1.40590 1.06717 1.34899 0.86689 0.80480 0.77302 0.83800 1.20289 1.21282 1.20156 1.87258 1.35830 1.15059 1.85410 1.25411 0.71928 0.93163 0.99339 1.87290 1.35185 1.15017 1.85394 0.92006 0.93573 0.86110 0.85950 0.84449 0.97296 0.90272 0.93443 0.89068 0.95126 0.96891 0.92849 0.90890 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 7.95 36.00 0.29 -2.29 16 2 C -0.05 -1.08 5.60 -104.51 -0.59 -1.66 16 3 C 0.02 0.37 6.81 -39.08 -0.27 0.11 16 4 C 0.00 -0.03 7.15 -39.08 -0.28 -0.31 16 5 C -0.11 -1.94 10.06 -39.47 -0.40 -2.34 16 6 C -0.12 -2.33 8.97 -39.58 -0.36 -2.69 16 7 C -0.02 -0.42 4.70 -104.62 -0.49 -0.91 16 8 C 0.10 2.32 0.48 -156.81 -0.08 2.25 16 9 C -0.14 -3.07 7.74 37.16 0.29 -2.79 16 10 C -0.14 -3.06 6.88 37.15 0.26 -2.80 16 11 C -0.50 -12.62 5.59 -34.44 -0.19 -12.81 16 12 H 0.06 1.54 7.15 -52.49 -0.38 1.17 16 13 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 14 N -0.88 -22.89 9.46 55.43 0.52 -22.37 16 15 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 O -0.32 -5.38 11.40 -45.69 -0.52 -5.90 16 20 C 0.21 2.93 8.89 101.05 0.90 3.83 16 21 O -0.31 -5.57 11.36 -45.68 -0.52 -6.09 16 22 H 0.06 1.15 7.12 -51.92 -0.37 0.78 16 23 H 0.05 0.86 8.05 -51.93 -0.42 0.44 16 24 H 0.12 2.65 4.14 -51.93 -0.21 2.44 16 25 H 0.12 1.83 8.06 -52.48 -0.42 1.40 16 26 H 0.14 2.44 5.88 -52.49 -0.31 2.13 16 27 H 0.01 0.17 8.12 -51.93 -0.42 -0.25 16 28 H 0.08 1.93 6.46 -51.93 -0.34 1.59 16 29 H 0.05 1.03 4.58 -51.93 -0.24 0.79 16 30 H 0.09 2.25 5.92 -51.93 -0.31 1.94 16 31 H 0.03 0.66 7.39 -51.93 -0.38 0.28 16 32 H 0.01 0.25 7.62 -51.93 -0.40 -0.15 16 33 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 274.14 15.07 4.13 4.13 Total: -1.00 -27.13 274.14 -6.58 -33.72 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -4.17 Total: 2.06 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -1.01 Total: -20.76 kcal Atomic # 7 Polarization: -22.89 SS G_CDS: 0.52 Total: -22.37 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -1.04 Total: -11.99 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.13 -6.58 -33.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260117708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.442 kcal (2) G-P(sol) polarization free energy of solvation -27.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds