Wall clock time and date at job start Mon Mar 30 2020 05:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34672 * 125.75914 * 2 1 4 4 C 1.40974 * 106.72658 * 179.90351 * 3 2 1 5 5 C 1.34734 * 106.93528 * 0.45423 * 4 3 2 6 6 O 1.33887 * 108.49204 * 359.61416 * 5 4 3 7 7 C 1.51153 * 124.21415 * 179.43371 * 5 4 3 8 8 O 1.42902 * 109.82490 * 253.34746 * 7 5 4 9 9 C 1.50700 * 109.83017 * 132.40508 * 7 5 4 10 10 H 1.07998 * 119.99774 * 148.07663 * 9 7 5 11 11 C 1.37881 * 120.00035 * 328.07408 * 9 7 5 12 12 N 1.31517 * 119.99768 * 162.64292 * 11 9 7 13 13 Si 1.86791 * 119.99927 * 342.64532 * 11 9 7 14 14 H 1.48508 * 109.47195 * 94.31490 * 13 11 9 15 15 H 1.48500 * 109.47179 * 214.31175 * 13 11 9 16 16 H 1.48498 * 109.47612 * 334.31225 * 13 11 9 17 17 C 1.53431 * 107.61250 * 12.87668 * 7 5 4 18 18 C 1.52740 * 117.65366 * 100.71151 * 17 7 5 19 19 C 1.52687 * 117.73094 * 169.62730 * 17 7 5 20 20 C 1.53181 * 114.82622 * 315.31461 * 17 7 5 21 21 C 1.50598 * 127.31632 * 180.48327 * 4 3 2 22 22 H 1.09007 * 109.47316 * 179.71538 * 1 2 3 23 23 H 1.09000 * 109.47038 * 59.72576 * 1 2 3 24 24 H 1.08992 * 109.47650 * 299.71964 * 1 2 3 25 25 H 1.07995 * 126.64038 * 0.02562 * 3 2 1 26 26 H 0.96705 * 114.00374 * 299.99564 * 8 7 5 27 27 H 0.97000 * 119.99572 * 179.97438 * 12 11 9 28 28 H 1.08999 * 117.50673 * 215.22151 * 18 17 7 29 29 H 1.09002 * 117.50831 * 0.29137 * 18 17 7 30 30 H 1.08997 * 117.50597 * 359.85126 * 19 17 7 31 31 H 1.09003 * 117.50242 * 144.87617 * 19 17 7 32 32 H 1.08994 * 109.53877 * 304.64971 * 20 17 7 33 33 H 1.08995 * 109.60175 * 184.43772 * 20 17 7 34 34 H 1.08998 * 109.52423 * 317.94412 * 21 4 3 35 35 H 1.09011 * 109.51924 * 78.12858 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0928 0.0000 4 6 3.6266 0.6331 0.0023 5 6 3.5774 -0.7133 -0.0067 6 8 2.2929 -1.0912 -0.0057 7 6 4.7954 -1.6083 -0.0201 8 8 4.9501 -2.1968 -1.3130 9 6 4.6474 -2.6886 1.0202 10 1 5.0843 -3.6621 0.8536 11 6 3.9543 -2.4340 2.1847 12 7 3.5285 -3.4320 2.9280 13 14 3.6201 -0.6719 2.7065 14 1 2.2800 -0.2570 2.2193 15 1 3.6589 -0.5785 4.1880 16 1 4.6557 0.2209 2.1270 17 6 6.0156 -0.7366 0.3046 18 6 6.5607 -0.7831 1.7307 19 6 7.3382 -1.4439 0.5904 20 6 6.0643 0.6032 -0.4363 21 6 4.8802 1.4676 0.0133 22 1 -0.3634 -1.0277 -0.0051 23 1 -0.3633 0.5181 -0.8875 24 1 -0.3634 0.5094 0.8924 25 1 1.9674 2.1222 0.0004 26 1 4.1989 -2.7386 -1.5911 27 1 3.0413 -3.2529 3.7474 28 1 6.9638 0.1406 2.1458 29 1 6.0562 -1.4376 2.4414 30 1 7.3453 -2.5332 0.5511 31 1 8.2530 -0.9553 0.2551 32 1 6.0009 0.4284 -1.5102 33 1 6.9981 1.1154 -0.2047 34 1 4.7636 2.3092 -0.6695 35 1 5.0621 1.8383 1.0221 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260242636.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:43 Heat of formation + Delta-G solvation = -14.696775 kcal Electronic energy + Delta-G solvation = -19672.675778 eV Core-core repulsion = 16830.921285 eV Total energy + Delta-G solvation = -2841.754493 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.80327 -40.18278 -36.74570 -35.37314 -34.56105 -33.38241 -31.15642 -30.01404 -26.72529 -26.05457 -23.68718 -23.29567 -22.12204 -20.79913 -19.47606 -18.79637 -18.21843 -17.79399 -16.77226 -16.37765 -15.85642 -15.41627 -14.94803 -14.71057 -14.39988 -14.15864 -13.91257 -13.83523 -13.67092 -13.29940 -13.02352 -12.65982 -12.56577 -12.43075 -12.12461 -11.91818 -11.80566 -11.66943 -11.05812 -10.57943 -10.45695 -10.36453 -10.24189 -8.97356 -8.44127 -6.50364 0.82517 1.28883 1.40704 1.51819 1.70220 2.17882 2.34399 2.89131 2.99395 3.63550 3.82384 3.93129 4.08128 4.13670 4.23155 4.35892 4.45715 4.49503 4.66941 4.68776 4.80259 4.81512 4.86519 4.90615 4.91778 5.04556 5.21302 5.25052 5.34979 5.41431 5.43192 5.55943 5.63701 5.80962 6.08567 6.46122 6.49069 6.86873 7.27181 8.67387 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.020629 B = 0.014931 C = 0.011957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.001357 B = 1874.888532 C = 2341.122696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.042 4.042 3 C -0.219 4.219 4 C -0.182 4.182 5 C -0.048 4.048 6 O -0.186 6.186 7 C 0.338 3.662 8 O -0.566 6.566 9 C -0.554 4.554 10 H 0.038 0.962 11 C 0.052 3.948 12 N -0.927 5.927 13 Si 0.888 3.112 14 H -0.272 1.272 15 H -0.319 1.319 16 H -0.181 1.181 17 C -0.116 4.116 18 C -0.164 4.164 19 C -0.146 4.146 20 C -0.076 4.076 21 C -0.046 4.046 22 H 0.068 0.932 23 H 0.113 0.887 24 H 0.093 0.907 25 H 0.174 0.826 26 H 0.375 0.625 27 H 0.264 0.736 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.119 0.881 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.419 13.159 -5.869 14.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.092 4.092 3 C -0.238 4.238 4 C -0.184 4.184 5 C -0.099 4.099 6 O -0.083 6.083 7 C 0.298 3.702 8 O -0.372 6.372 9 C -0.591 4.591 10 H 0.056 0.944 11 C -0.148 4.148 12 N -0.565 5.565 13 Si 0.714 3.286 14 H -0.198 1.198 15 H -0.249 1.249 16 H -0.102 1.102 17 C -0.117 4.117 18 C -0.201 4.201 19 C -0.182 4.182 20 C -0.113 4.113 21 C -0.082 4.082 22 H 0.087 0.913 23 H 0.131 0.869 24 H 0.111 0.889 25 H 0.192 0.808 26 H 0.222 0.778 27 H 0.073 0.927 28 H 0.131 0.869 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.137 0.863 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.014 13.115 -5.719 14.307 hybrid contribution -1.169 -0.659 0.860 1.594 sum -1.183 12.456 -4.859 13.422 Atomic orbital electron populations 1.20436 0.82992 1.04114 1.04965 1.23312 0.95858 0.84392 1.05593 1.21570 0.91654 1.00108 1.10444 1.20551 0.97076 0.92965 1.07790 1.23657 0.83797 0.95936 1.06479 1.83997 1.17100 1.36192 1.70970 1.17125 0.84392 0.87084 0.81639 1.86304 1.46878 1.68673 1.35332 1.21344 1.36124 0.98163 1.03493 0.94419 1.25662 0.92464 1.00672 0.96040 1.70127 1.36718 1.33956 1.15690 0.86950 0.82483 0.83718 0.75415 1.19823 1.24913 1.10220 1.21362 0.94188 0.96960 0.99141 1.23030 1.03394 1.02427 0.91253 1.22763 0.94210 0.99111 1.02160 1.21199 0.98825 0.91997 0.99256 1.20169 0.89118 0.96582 1.02360 0.91341 0.86901 0.88877 0.80830 0.77834 0.92696 0.86942 0.90821 0.91288 0.86281 0.91671 0.88581 0.88275 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.84 10.42 71.24 0.74 -1.10 16 2 C -0.04 -1.57 5.78 24.87 0.14 -1.43 16 3 C -0.22 -7.64 10.18 22.12 0.23 -7.41 16 4 C -0.18 -7.06 3.77 -20.03 -0.08 -7.13 16 5 C -0.05 -2.22 3.28 25.02 0.08 -2.13 16 6 O -0.19 -8.82 9.46 -0.29 0.00 -8.82 16 7 C 0.34 16.29 0.85 -12.00 -0.01 16.28 16 8 O -0.57 -26.46 13.00 -148.98 -1.94 -28.40 16 9 C -0.55 -32.02 7.29 25.60 0.19 -31.84 16 10 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 11 C 0.05 3.09 4.51 84.66 0.38 3.48 16 12 N -0.93 -59.07 13.96 21.45 0.30 -58.77 16 13 Si 0.89 44.23 20.33 68.60 1.39 45.62 16 14 H -0.27 -13.50 4.76 99.48 0.47 -13.02 16 15 H -0.32 -16.55 7.11 99.48 0.71 -15.85 16 16 H -0.18 -7.81 2.43 99.48 0.24 -7.57 16 17 C -0.12 -4.69 1.03 -52.17 -0.05 -4.74 16 18 C -0.16 -6.55 6.72 30.51 0.21 -6.34 16 19 C -0.15 -5.51 9.64 30.50 0.29 -5.22 16 20 C -0.08 -2.41 5.67 30.77 0.17 -2.23 16 21 C -0.05 -1.41 5.70 29.93 0.17 -1.24 16 22 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 23 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.17 4.62 8.06 -2.91 -0.02 4.60 16 26 H 0.37 16.18 9.05 -74.05 -0.67 15.51 16 27 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 28 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 29 H 0.07 3.54 4.48 -2.39 -0.01 3.53 16 30 H 0.07 2.99 7.86 -2.39 -0.02 2.97 16 31 H 0.12 3.50 8.14 -2.39 -0.02 3.48 16 32 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.10 2.39 8.11 -2.39 -0.02 2.37 16 34 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.08 2.30 7.24 -2.38 -0.02 2.29 16 Total: -1.00 -73.11 264.04 1.95 -71.15 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: -0.27 Total: 30.27 kcal Atomic # 6 Polarization: -53.52 SS G_CDS: 2.47 Total: -51.06 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.30 Total: -58.77 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -1.94 Total: -37.22 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.39 Total: 45.62 kcal Total: -73.11 1.95 -71.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260242636.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.457 kcal (2) G-P(sol) polarization free energy of solvation -73.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds