Wall clock time and date at job start Mon Mar 30 2020 06:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35978 * 117.00075 * 2 1 4 4 C 1.38722 * 120.00296 * 0.02562 * 3 2 1 5 5 C 1.38109 * 120.00237 * 180.02562 * 4 3 2 6 6 C 1.50694 * 119.99891 * 179.97438 * 5 4 3 7 7 C 1.50701 * 115.54825 * 114.59257 * 6 5 4 8 8 H 1.07997 * 120.00278 * 145.58495 * 7 6 5 9 9 C 1.37877 * 119.99783 * 325.58447 * 7 6 5 10 10 N 1.31516 * 120.00404 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 120.00022 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46737 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47245 * 119.99651 * 11 9 7 14 14 H 1.48498 * 109.46707 * 239.99922 * 11 9 7 15 15 C 1.53002 * 117.50166 * 328.92604 * 6 5 4 16 16 C 1.53003 * 117.50200 * 260.26178 * 6 5 4 17 17 C 1.38718 * 119.99844 * 359.70571 * 5 4 3 18 18 O 1.35986 * 120.00131 * 180.29468 * 17 5 4 19 19 C 1.38678 * 120.00317 * 0.54693 * 17 5 4 20 20 C 1.38159 * 119.99413 * 359.47730 * 19 17 5 21 21 C 1.50703 * 119.99861 * 180.27357 * 20 19 17 22 22 H 1.08997 * 109.47094 * 300.00227 * 1 2 3 23 23 H 1.08998 * 109.46878 * 60.00182 * 1 2 3 24 24 H 1.09004 * 109.46970 * 180.02562 * 1 2 3 25 25 H 1.08000 * 119.99467 * 359.97438 * 4 3 2 26 26 H 0.96994 * 120.00667 * 180.02562 * 10 9 7 27 27 H 1.08997 * 117.49754 * 359.97438 * 15 6 5 28 28 H 1.08999 * 117.50340 * 145.02166 * 15 6 5 29 29 H 1.08994 * 117.49619 * 214.98344 * 16 6 5 30 30 H 1.08999 * 117.49591 * 359.97438 * 16 6 5 31 31 H 0.96701 * 113.99753 * 275.22821 * 18 17 5 32 32 H 1.08000 * 120.00578 * 179.74456 * 19 17 5 33 33 H 1.09001 * 109.47367 * 89.99345 * 21 20 19 34 34 H 1.08999 * 109.47498 * 209.99661 * 21 20 19 35 35 H 1.09007 * 109.47005 * 330.00072 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9179 3.6056 0.0000 6 6 1.0972 4.8694 0.0000 7 6 1.2182 5.7230 1.2361 8 1 1.1692 6.7989 1.1563 9 6 1.3915 5.1303 2.4688 10 7 1.4506 3.8200 2.5661 11 14 1.5408 6.1882 4.0012 12 1 1.4425 7.6213 3.6247 13 1 0.4471 5.8480 4.9461 14 1 2.8523 5.9364 4.6506 15 6 -0.2627 4.8287 -0.6999 16 6 0.9044 5.5867 -1.3377 17 6 3.3032 3.6781 0.0051 18 8 3.9206 4.8897 0.0106 19 6 4.0585 2.5151 -0.0007 20 6 3.4312 1.2841 -0.0007 21 6 4.2520 0.0202 -0.0008 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2124 2.3185 0.0005 26 1 1.5722 3.4030 3.4334 27 1 -0.5636 3.8879 -1.1608 28 1 -1.0697 5.4196 -0.2667 29 1 0.8648 6.6758 -1.3236 30 1 1.3716 5.1446 -2.2176 31 1 4.0306 5.2791 -0.8677 32 1 5.1370 2.5716 -0.0009 33 1 4.4501 -0.2845 1.0268 34 1 3.7034 -0.7692 -0.5145 35 1 5.1963 0.2002 -0.5147 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260250853.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:14 Heat of formation + Delta-G solvation = -31.117528 kcal Electronic energy + Delta-G solvation = -18723.827842 eV Core-core repulsion = 15881.361292 eV Total energy + Delta-G solvation = -2842.466550 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.61146 -37.79478 -36.00379 -35.00475 -32.08299 -31.29076 -28.43045 -26.95098 -26.18077 -25.18804 -21.81075 -21.21082 -20.78599 -19.31694 -17.31209 -16.95134 -15.76069 -15.64163 -15.13876 -14.60297 -14.21265 -13.77348 -13.53293 -13.14714 -12.94970 -12.81609 -12.12389 -11.90115 -11.59875 -11.29893 -11.14311 -10.95842 -10.86562 -10.75232 -10.44763 -10.35286 -9.98267 -9.84046 -9.19213 -9.06845 -8.86324 -8.27530 -7.67392 -6.91715 -5.90826 -4.02885 2.34339 2.40731 3.30813 3.39589 3.42154 3.94549 4.42376 4.63885 4.98868 5.25877 5.50398 5.54308 5.60980 5.62701 5.78520 5.85988 5.89779 6.06605 6.16066 6.22060 6.26247 6.39822 6.48125 6.57276 6.58414 6.84431 6.88725 7.08727 7.16185 7.22507 7.44300 7.59318 7.78134 7.87718 8.14870 8.35595 8.78696 8.92582 9.56158 11.04365 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.019865 B = 0.009237 C = 0.009012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.152907 B = 3030.568996 C = 3106.071271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.325 6.325 3 C 0.106 3.894 4 C -0.157 4.157 5 C 0.058 3.942 6 C 0.088 3.912 7 C -0.479 4.479 8 H 0.062 0.938 9 C 0.075 3.925 10 N -0.865 5.865 11 Si 0.894 3.106 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.283 1.283 15 C -0.209 4.209 16 C -0.204 4.204 17 C 0.084 3.916 18 O -0.479 6.479 19 C -0.120 4.120 20 C -0.136 4.136 21 C -0.091 4.091 22 H 0.056 0.944 23 H 0.047 0.953 24 H 0.088 0.912 25 H 0.117 0.883 26 H 0.260 0.740 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.365 0.635 32 H 0.116 0.884 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.982 -5.363 -6.370 8.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.239 6.239 3 C 0.062 3.938 4 C -0.176 4.176 5 C 0.056 3.944 6 C 0.087 3.913 7 C -0.516 4.516 8 H 0.080 0.920 9 C -0.129 4.129 10 N -0.501 5.501 11 Si 0.722 3.278 12 H -0.198 1.198 13 H -0.212 1.212 14 H -0.209 1.209 15 C -0.247 4.247 16 C -0.242 4.242 17 C 0.039 3.961 18 O -0.285 6.285 19 C -0.138 4.138 20 C -0.137 4.137 21 C -0.148 4.148 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.106 0.894 25 H 0.135 0.865 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.217 0.783 32 H 0.134 0.866 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.107 -5.800 -5.588 8.129 hybrid contribution -0.312 0.782 0.568 1.016 sum 0.795 -5.018 -5.019 7.142 Atomic orbital electron populations 1.22891 0.79555 1.02446 1.01457 1.85941 1.20435 1.27820 1.89748 1.18638 0.91476 0.83688 0.99969 1.20669 0.99101 0.91154 1.06693 1.19199 0.92128 0.93459 0.89583 1.17711 0.91402 0.91469 0.90713 1.20371 1.50405 0.91865 0.88945 0.91994 1.24947 0.94048 0.94975 0.98975 1.69964 1.47763 1.08279 1.24076 0.86495 0.77571 0.80664 0.83045 1.19775 1.21199 1.20949 1.23099 0.94219 1.00227 1.07180 1.22910 1.05163 0.98281 0.97824 1.17977 0.89751 0.84193 1.04170 1.84963 1.79671 1.32206 1.31662 1.20777 0.98830 0.91056 1.03157 1.18645 0.90375 0.94899 1.09793 1.20436 0.98111 0.94991 1.01257 0.92565 0.93388 0.89393 0.86515 0.93003 0.91622 0.90147 0.90188 0.91466 0.78326 0.86605 0.92474 0.92066 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.81 101.05 0.99 1.47 16 2 O -0.33 -6.08 9.54 -19.67 -0.19 -6.26 16 3 C 0.11 2.23 6.66 -39.24 -0.26 1.97 16 4 C -0.16 -3.53 7.56 -39.45 -0.30 -3.83 16 5 C 0.06 1.37 3.05 -104.49 -0.32 1.05 16 6 C 0.09 2.12 1.65 -156.81 -0.26 1.86 16 7 C -0.48 -12.97 8.62 -34.44 -0.30 -13.26 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.07 2.06 5.37 -17.82 -0.10 1.96 16 10 N -0.87 -24.33 10.88 55.43 0.60 -23.72 16 11 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 C -0.21 -4.57 9.43 -26.69 -0.25 -4.82 16 16 C -0.20 -4.26 9.94 -26.69 -0.27 -4.53 16 17 C 0.08 1.91 6.61 -39.24 -0.26 1.65 16 18 O -0.48 -10.50 12.59 -19.70 -0.25 -10.75 16 19 C -0.12 -2.47 9.64 -39.45 -0.38 -2.85 16 20 C -0.14 -2.73 5.89 -104.49 -0.62 -3.35 16 21 C -0.09 -1.47 9.79 36.01 0.35 -1.12 16 22 H 0.06 0.90 7.66 -51.93 -0.40 0.51 16 23 H 0.05 0.68 7.66 -51.93 -0.40 0.28 16 24 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.12 2.56 5.25 -52.49 -0.28 2.28 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.07 1.33 7.13 -51.93 -0.37 0.96 16 28 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 29 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.36 6.15 9.06 45.56 0.41 6.56 16 32 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.94 7.53 -51.93 -0.39 0.55 16 35 H 0.05 0.75 8.09 -51.93 -0.42 0.33 16 LS Contribution 295.15 15.07 4.45 4.45 Total: -1.00 -30.56 295.15 -6.28 -36.85 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -3.92 Total: 6.61 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -1.96 Total: -23.79 kcal Atomic # 7 Polarization: -24.33 SS G_CDS: 0.60 Total: -23.72 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.44 Total: -17.01 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.56 -6.28 -36.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260250853.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.730 kcal (2) G-P(sol) polarization free energy of solvation -30.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds