Wall clock time and date at job start Mon Mar 30 2020 06:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35978 * 117.00075 * 2 1 4 4 C 1.38722 * 120.00296 * 0.02562 * 3 2 1 5 5 C 1.38109 * 120.00237 * 180.02562 * 4 3 2 6 6 C 1.50694 * 119.99891 * 179.97438 * 5 4 3 7 7 C 1.50701 * 115.54825 * 114.59257 * 6 5 4 8 8 H 1.07997 * 120.00278 * 145.58495 * 7 6 5 9 9 C 1.37877 * 119.99783 * 325.58447 * 7 6 5 10 10 N 1.31516 * 120.00404 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 120.00022 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46737 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47245 * 119.99651 * 11 9 7 14 14 H 1.48498 * 109.46707 * 239.99922 * 11 9 7 15 15 C 1.53002 * 117.50166 * 328.92604 * 6 5 4 16 16 C 1.53003 * 117.50200 * 260.26178 * 6 5 4 17 17 C 1.38718 * 119.99844 * 359.70571 * 5 4 3 18 18 O 1.35986 * 120.00131 * 180.29468 * 17 5 4 19 19 C 1.38678 * 120.00317 * 0.54693 * 17 5 4 20 20 C 1.38159 * 119.99413 * 359.47730 * 19 17 5 21 21 C 1.50703 * 119.99861 * 180.27357 * 20 19 17 22 22 H 1.08997 * 109.47094 * 300.00227 * 1 2 3 23 23 H 1.08998 * 109.46878 * 60.00182 * 1 2 3 24 24 H 1.09004 * 109.46970 * 180.02562 * 1 2 3 25 25 H 1.08000 * 119.99467 * 359.97438 * 4 3 2 26 26 H 0.96994 * 120.00667 * 180.02562 * 10 9 7 27 27 H 1.08997 * 117.49754 * 359.97438 * 15 6 5 28 28 H 1.08999 * 117.50340 * 145.02166 * 15 6 5 29 29 H 1.08994 * 117.49619 * 214.98344 * 16 6 5 30 30 H 1.08999 * 117.49591 * 359.97438 * 16 6 5 31 31 H 0.96701 * 113.99753 * 275.22821 * 18 17 5 32 32 H 1.08000 * 120.00578 * 179.74456 * 19 17 5 33 33 H 1.09001 * 109.47367 * 89.99345 * 21 20 19 34 34 H 1.08999 * 109.47498 * 209.99661 * 21 20 19 35 35 H 1.09007 * 109.47005 * 330.00072 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9179 3.6056 0.0000 6 6 1.0972 4.8694 0.0000 7 6 1.2182 5.7230 1.2361 8 1 1.1692 6.7989 1.1563 9 6 1.3915 5.1303 2.4688 10 7 1.4506 3.8200 2.5661 11 14 1.5408 6.1882 4.0012 12 1 1.4425 7.6213 3.6247 13 1 0.4471 5.8480 4.9461 14 1 2.8523 5.9364 4.6506 15 6 -0.2627 4.8287 -0.6999 16 6 0.9044 5.5867 -1.3377 17 6 3.3032 3.6781 0.0051 18 8 3.9206 4.8897 0.0106 19 6 4.0585 2.5151 -0.0007 20 6 3.4312 1.2841 -0.0007 21 6 4.2520 0.0202 -0.0008 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2124 2.3185 0.0005 26 1 1.5722 3.4030 3.4334 27 1 -0.5636 3.8879 -1.1608 28 1 -1.0697 5.4196 -0.2667 29 1 0.8648 6.6758 -1.3236 30 1 1.3716 5.1446 -2.2176 31 1 4.0306 5.2791 -0.8677 32 1 5.1370 2.5716 -0.0009 33 1 4.4501 -0.2845 1.0268 34 1 3.7034 -0.7692 -0.5145 35 1 5.1963 0.2002 -0.5147 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260250853.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:13 Heat of formation + Delta-G solvation = -50.087380 kcal Electronic energy + Delta-G solvation = -18724.650436 eV Core-core repulsion = 15881.361292 eV Total energy + Delta-G solvation = -2843.289144 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.17477 -39.35019 -37.72329 -36.55316 -34.10289 -32.82744 -29.96766 -28.26352 -27.92677 -26.95887 -23.44528 -22.83842 -22.41531 -21.06785 -19.05973 -18.56755 -17.41240 -17.23768 -16.64404 -16.47973 -15.86488 -15.48911 -14.97143 -14.87635 -14.52977 -14.15502 -13.64075 -13.51775 -13.10291 -12.94477 -12.89373 -12.61743 -12.43993 -12.39898 -12.21855 -11.99359 -11.71472 -11.46885 -10.99068 -10.90830 -10.62124 -10.17475 -9.33448 -8.53748 -7.89993 -6.10414 0.72187 0.79422 1.37449 1.41603 1.50007 2.43511 2.56860 3.00922 3.08624 3.65887 3.74447 4.03843 4.16556 4.33875 4.41040 4.45469 4.53166 4.60503 4.72341 4.77611 4.82330 4.91132 4.93170 4.95745 5.06490 5.14053 5.29168 5.50302 5.52973 5.66320 5.68215 5.82195 6.04286 6.11467 6.40783 6.64437 6.85124 7.29068 7.49040 8.97689 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.019865 B = 0.009237 C = 0.009012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.152907 B = 3030.568996 C = 3106.071271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.328 6.328 3 C 0.099 3.901 4 C -0.170 4.170 5 C 0.037 3.963 6 C 0.055 3.945 7 C -0.491 4.491 8 H 0.050 0.950 9 C 0.032 3.968 10 N -0.884 5.884 11 Si 0.944 3.056 12 H -0.269 1.269 13 H -0.282 1.282 14 H -0.289 1.289 15 C -0.205 4.205 16 C -0.182 4.182 17 C 0.064 3.936 18 O -0.495 6.495 19 C -0.123 4.123 20 C -0.142 4.142 21 C -0.087 4.087 22 H 0.039 0.961 23 H 0.055 0.945 24 H 0.127 0.873 25 H 0.112 0.888 26 H 0.253 0.747 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.383 0.617 32 H 0.138 0.862 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.408 -6.211 -7.076 9.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.243 6.243 3 C 0.055 3.945 4 C -0.189 4.189 5 C 0.036 3.964 6 C 0.055 3.945 7 C -0.528 4.528 8 H 0.068 0.932 9 C -0.169 4.169 10 N -0.520 5.520 11 Si 0.771 3.229 12 H -0.194 1.194 13 H -0.208 1.208 14 H -0.216 1.216 15 C -0.243 4.243 16 C -0.219 4.219 17 C 0.019 3.981 18 O -0.304 6.304 19 C -0.142 4.142 20 C -0.142 4.142 21 C -0.143 4.143 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.145 0.855 25 H 0.130 0.870 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.238 0.762 32 H 0.156 0.844 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.521 -6.636 -6.315 9.286 hybrid contribution -0.477 1.035 0.731 1.354 sum 1.044 -5.601 -5.584 7.978 Atomic orbital electron populations 1.23147 0.77727 1.04878 1.01045 1.85933 1.22270 1.26636 1.89437 1.18822 0.92150 0.83999 0.99549 1.20704 0.99057 0.91592 1.07505 1.19230 0.92616 0.93461 0.91088 1.17769 0.93153 0.92478 0.91150 1.20596 1.50006 0.91713 0.90509 0.93157 1.25522 0.94381 0.95914 1.01131 1.70114 1.48948 1.09131 1.23820 0.85720 0.77096 0.79612 0.80461 1.19356 1.20792 1.21557 1.23058 0.93503 1.00952 1.06759 1.22919 1.03628 0.98401 0.96929 1.18224 0.89885 0.84937 1.05028 1.84889 1.79549 1.32423 1.33563 1.21049 0.99937 0.90676 1.02526 1.19137 0.90599 0.96273 1.08228 1.20475 0.98703 0.93201 1.01949 0.94179 0.92598 0.85539 0.86983 0.93753 0.90327 0.90758 0.89803 0.89387 0.76218 0.84409 0.92091 0.91316 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 9.81 113.37 1.11 1.87 16 2 O -0.33 -11.76 9.54 -93.30 -0.89 -12.65 16 3 C 0.10 4.07 6.66 22.49 0.15 4.22 16 4 C -0.17 -7.58 7.56 22.35 0.17 -7.41 16 5 C 0.04 1.77 3.05 -19.78 -0.06 1.71 16 6 C 0.05 2.65 1.65 -53.67 -0.09 2.56 16 7 C -0.49 -26.77 8.62 25.60 0.22 -26.55 16 8 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 9 C 0.03 1.78 5.37 84.65 0.45 2.23 16 10 N -0.88 -50.23 10.88 21.45 0.23 -49.99 16 11 Si 0.94 44.81 29.54 68.60 2.03 46.84 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 14 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 15 C -0.20 -8.82 9.43 30.62 0.29 -8.53 16 16 C -0.18 -7.35 9.94 30.62 0.30 -7.04 16 17 C 0.06 2.88 6.61 22.49 0.15 3.03 16 18 O -0.50 -21.53 12.59 -93.39 -1.18 -22.71 16 19 C -0.12 -4.93 9.64 22.36 0.22 -4.72 16 20 C -0.14 -5.44 5.89 -19.78 -0.12 -5.55 16 21 C -0.09 -2.56 9.79 71.24 0.70 -1.86 16 22 H 0.04 1.27 7.66 -2.39 -0.02 1.25 16 23 H 0.06 1.50 7.66 -2.39 -0.02 1.48 16 24 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 25 H 0.11 4.94 5.25 -2.91 -0.02 4.92 16 26 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 27 H 0.08 3.13 7.13 -2.39 -0.02 3.11 16 28 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 29 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 30 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 31 H 0.38 12.67 9.06 -74.06 -0.67 12.00 16 32 H 0.14 4.74 8.06 -2.91 -0.02 4.71 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 1.92 7.53 -2.39 -0.02 1.90 16 35 H 0.08 1.92 8.09 -2.38 -0.02 1.90 16 Total: -1.00 -64.59 295.15 4.12 -60.47 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.43 Total: 24.08 kcal Atomic # 6 Polarization: -49.55 SS G_CDS: 3.50 Total: -46.05 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.23 Total: -49.99 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -2.07 Total: -35.35 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -64.59 4.12 -60.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260250853.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.385 kcal (2) G-P(sol) polarization free energy of solvation -64.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds