Wall clock time and date at job start Mon Mar 30 2020 06:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35999 * 117.00071 * 2 1 4 4 C 1.38561 * 120.07008 * 90.00003 * 3 2 1 5 5 C 1.50697 * 120.00273 * 359.74496 * 4 3 2 6 6 C 1.38251 * 119.99946 * 179.72618 * 4 3 2 7 7 C 1.38252 * 120.14239 * 0.02562 * 6 4 3 8 8 C 1.50707 * 119.92299 * 179.97438 * 7 6 4 9 9 C 1.50695 * 115.54860 * 54.72634 * 8 7 6 10 10 H 1.07996 * 120.00085 * 268.70835 * 9 8 7 11 11 C 1.37881 * 120.00281 * 88.70892 * 9 8 7 12 12 N 1.31509 * 120.00342 * 170.09630 * 11 9 8 13 13 Si 1.86802 * 119.99582 * 350.09486 * 11 9 8 14 14 H 1.48504 * 109.47059 * 85.13529 * 13 11 9 15 15 H 1.48502 * 109.46977 * 205.13506 * 13 11 9 16 16 H 1.48501 * 109.47316 * 325.13642 * 13 11 9 17 17 C 1.52996 * 117.50013 * 269.05276 * 8 7 6 18 18 C 1.52995 * 117.49670 * 200.39322 * 8 7 6 19 19 C 1.38245 * 120.14911 * 359.95924 * 7 6 4 20 20 C 1.38558 * 119.99836 * 0.03962 * 19 7 6 21 21 O 1.36000 * 120.07384 * 180.02562 * 20 19 7 22 22 H 1.08998 * 109.46917 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47164 * 299.99912 * 1 2 3 24 24 H 1.09008 * 109.46708 * 60.00254 * 1 2 3 25 25 H 1.08995 * 109.47186 * 90.00195 * 5 4 3 26 26 H 1.09002 * 109.47130 * 210.00268 * 5 4 3 27 27 H 1.09000 * 109.47394 * 330.00258 * 5 4 3 28 28 H 1.07993 * 119.92728 * 179.97438 * 6 4 3 29 29 H 0.96996 * 120.00029 * 180.02562 * 12 11 9 30 30 H 1.09005 * 117.49781 * 0.02562 * 17 8 7 31 31 H 1.08994 * 117.49850 * 145.01984 * 17 8 7 32 32 H 1.08999 * 117.50424 * 214.97959 * 18 8 7 33 33 H 1.09002 * 117.50377 * 359.97438 * 18 8 7 34 34 H 1.08002 * 119.99812 * 180.02562 * 19 7 6 35 35 H 0.96702 * 113.99838 * 269.98264 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.3616 1.8303 1.1991 5 6 2.0151 1.1631 2.5051 6 6 2.9944 3.0596 1.1974 7 6 3.3135 3.6744 0.0010 8 6 4.0028 5.0147 0.0049 9 6 5.2846 5.0839 0.7942 10 1 5.2635 5.3750 1.8339 11 6 6.4845 4.7757 0.1888 12 7 7.6169 5.0207 0.8110 13 14 6.5014 4.0102 -1.5150 14 1 6.4259 5.0821 -2.5401 15 1 7.7564 3.2377 -1.6981 16 1 5.3355 3.1022 -1.6614 17 6 3.1192 6.2635 -0.0186 18 6 3.9092 5.8608 -1.2663 19 6 3.0021 3.0625 -1.1989 20 6 2.3680 1.8306 -1.2042 21 8 2.0614 1.2270 -2.3837 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 2.8454 0.5322 2.8223 26 1 1.8266 1.9236 3.2629 27 1 1.1228 0.5509 2.3749 28 1 3.2391 3.5408 2.1327 29 1 8.4610 4.8042 0.3849 30 1 2.0394 6.1158 -0.0365 31 1 3.4653 7.1353 0.5365 32 1 4.7747 6.4680 -1.5317 33 1 3.3496 5.4480 -2.1057 34 1 3.2529 3.5449 -2.1321 35 1 1.1871 1.4565 -2.7274 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260360719.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:40 Heat of formation + Delta-G solvation = -31.592408 kcal Electronic energy + Delta-G solvation = -18364.053268 eV Core-core repulsion = 15521.566126 eV Total energy + Delta-G solvation = -2842.487142 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.10714 -37.83515 -36.96315 -35.49304 -32.19702 -31.51517 -29.16463 -27.30336 -26.05383 -25.68231 -22.29278 -22.09382 -21.04373 -19.03120 -17.83878 -17.23424 -16.55174 -15.91588 -15.47684 -14.89416 -14.53643 -14.27627 -13.96218 -13.20861 -13.08614 -13.01501 -12.69305 -12.35922 -12.13077 -11.53864 -11.48410 -11.36923 -11.11663 -10.92807 -10.58207 -10.48396 -10.00870 -9.76845 -9.51765 -9.39357 -8.69008 -8.60100 -8.07666 -7.70512 -6.16933 -4.20163 1.62988 1.72336 3.31625 3.42268 3.52484 3.80352 4.11947 4.41682 4.45690 4.86996 5.10613 5.19835 5.27835 5.29813 5.37444 5.53618 5.73564 5.78713 5.79149 5.91484 5.98877 6.03976 6.07555 6.26584 6.38774 6.41422 6.54822 6.67504 6.83827 6.98586 7.05993 7.22461 7.34423 7.53922 7.67462 8.07469 8.41474 8.84563 9.46627 10.93592 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.024959 B = 0.008142 C = 0.007742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.572284 B = 3438.216561 C = 3615.721296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.326 6.326 3 C 0.040 3.960 4 C -0.096 4.096 5 C -0.104 4.104 6 C -0.094 4.094 7 C 0.001 3.999 8 C 0.029 3.971 9 C -0.488 4.488 10 H 0.081 0.919 11 C 0.085 3.915 12 N -0.891 5.891 13 Si 0.862 3.138 14 H -0.275 1.275 15 H -0.294 1.294 16 H -0.243 1.243 17 C -0.168 4.168 18 C -0.199 4.199 19 C -0.141 4.141 20 C 0.082 3.918 21 O -0.490 6.490 22 H 0.088 0.912 23 H 0.043 0.957 24 H 0.038 0.962 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.132 0.868 29 H 0.266 0.734 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.553 -5.519 -2.004 15.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.242 6.242 3 C -0.003 4.003 4 C -0.096 4.096 5 C -0.161 4.161 6 C -0.112 4.112 7 C 0.000 4.000 8 C 0.028 3.972 9 C -0.524 4.524 10 H 0.099 0.901 11 C -0.119 4.119 12 N -0.527 5.527 13 Si 0.689 3.311 14 H -0.201 1.201 15 H -0.221 1.221 16 H -0.167 1.167 17 C -0.205 4.205 18 C -0.236 4.236 19 C -0.160 4.160 20 C 0.037 3.963 21 O -0.298 6.298 22 H 0.106 0.894 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.150 0.850 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.143 0.857 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -13.693 -5.966 -1.944 15.063 hybrid contribution -0.305 -0.087 -1.161 1.204 sum -13.998 -6.053 -3.105 15.564 Atomic orbital electron populations 1.22898 0.80646 1.02488 1.00050 1.86122 1.18739 1.25051 1.94333 1.18637 1.02019 0.88065 0.91606 1.20035 1.00409 0.94869 0.94313 1.20635 1.01611 1.00134 0.93678 1.20807 0.97789 0.93601 0.98969 1.19818 0.91742 0.97030 0.91391 1.18215 0.96337 0.85115 0.97553 1.20146 0.86735 1.47215 0.98338 0.90145 1.24929 0.95180 0.93986 0.97771 1.69895 0.97629 1.46047 1.39093 0.87096 0.78580 0.80629 0.84793 1.20084 1.22060 1.16682 1.22857 0.95744 1.00241 1.01706 1.23053 1.02660 1.06212 0.91631 1.21282 1.01238 0.94219 0.99249 1.18667 1.01420 0.91843 0.84359 1.84912 1.38642 1.70389 1.35901 0.89362 0.93806 0.94368 0.91059 0.91544 0.92093 0.84998 0.92384 0.90868 0.89097 0.89041 0.90746 0.85663 0.77005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.76 101.05 1.09 1.47 16 2 O -0.33 -5.31 9.42 -34.24 -0.32 -5.63 16 3 C 0.04 0.73 5.71 -39.12 -0.22 0.50 16 4 C -0.10 -1.69 5.89 -104.50 -0.62 -2.30 16 5 C -0.10 -1.46 9.79 36.00 0.35 -1.11 16 6 C -0.09 -1.83 9.10 -39.57 -0.36 -2.19 16 7 C 0.00 0.02 4.65 -104.61 -0.49 -0.47 16 8 C 0.03 0.65 1.11 -156.82 -0.17 0.47 16 9 C -0.49 -13.19 9.11 -34.44 -0.31 -13.50 16 10 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 11 C 0.09 2.41 5.46 -17.82 -0.10 2.32 16 12 N -0.89 -26.75 13.96 55.43 0.77 -25.98 16 13 Si 0.86 21.64 25.44 -169.99 -4.32 17.31 16 14 H -0.28 -6.68 7.09 56.52 0.40 -6.28 16 15 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 16 H -0.24 -5.94 4.59 56.52 0.26 -5.68 16 17 C -0.17 -3.29 9.94 -26.70 -0.27 -3.55 16 18 C -0.20 -4.11 7.36 -26.70 -0.20 -4.30 16 19 C -0.14 -2.82 7.29 -39.46 -0.29 -3.11 16 20 C 0.08 1.52 6.72 -39.12 -0.26 1.26 16 21 O -0.49 -8.09 13.29 -34.24 -0.46 -8.54 16 22 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.04 0.45 7.24 -51.93 -0.38 0.08 16 24 H 0.04 0.39 8.14 -51.92 -0.42 -0.04 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 27 H 0.06 0.76 6.30 -51.93 -0.33 0.43 16 28 H 0.13 2.54 8.06 -52.49 -0.42 2.11 16 29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 32 H 0.09 2.00 7.57 -51.93 -0.39 1.61 16 33 H 0.07 1.38 6.58 -51.93 -0.34 1.04 16 34 H 0.13 2.45 6.22 -52.49 -0.33 2.12 16 35 H 0.38 4.11 9.06 45.56 0.41 4.52 16 LS Contribution 289.96 15.07 4.37 4.37 Total: -1.00 -31.71 289.96 -5.81 -37.52 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -4.01 Total: 5.47 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -1.84 Total: -24.52 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.77 Total: -25.98 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.78 Total: -14.17 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.32 Total: 17.31 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.71 -5.81 -37.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260360719.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.926 kcal (2) G-P(sol) polarization free energy of solvation -31.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds