Wall clock time and date at job start Mon Mar 30 2020 06:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35999 * 117.00071 * 2 1 4 4 C 1.38561 * 120.07008 * 90.00003 * 3 2 1 5 5 C 1.50697 * 120.00273 * 359.74496 * 4 3 2 6 6 C 1.38251 * 119.99946 * 179.72618 * 4 3 2 7 7 C 1.38252 * 120.14239 * 0.02562 * 6 4 3 8 8 C 1.50707 * 119.92299 * 179.97438 * 7 6 4 9 9 C 1.50695 * 115.54860 * 54.72634 * 8 7 6 10 10 H 1.07996 * 120.00085 * 268.70835 * 9 8 7 11 11 C 1.37881 * 120.00281 * 88.70892 * 9 8 7 12 12 N 1.31509 * 120.00342 * 170.09630 * 11 9 8 13 13 Si 1.86802 * 119.99582 * 350.09486 * 11 9 8 14 14 H 1.48504 * 109.47059 * 85.13529 * 13 11 9 15 15 H 1.48502 * 109.46977 * 205.13506 * 13 11 9 16 16 H 1.48501 * 109.47316 * 325.13642 * 13 11 9 17 17 C 1.52996 * 117.50013 * 269.05276 * 8 7 6 18 18 C 1.52995 * 117.49670 * 200.39322 * 8 7 6 19 19 C 1.38245 * 120.14911 * 359.95924 * 7 6 4 20 20 C 1.38558 * 119.99836 * 0.03962 * 19 7 6 21 21 O 1.36000 * 120.07384 * 180.02562 * 20 19 7 22 22 H 1.08998 * 109.46917 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47164 * 299.99912 * 1 2 3 24 24 H 1.09008 * 109.46708 * 60.00254 * 1 2 3 25 25 H 1.08995 * 109.47186 * 90.00195 * 5 4 3 26 26 H 1.09002 * 109.47130 * 210.00268 * 5 4 3 27 27 H 1.09000 * 109.47394 * 330.00258 * 5 4 3 28 28 H 1.07993 * 119.92728 * 179.97438 * 6 4 3 29 29 H 0.96996 * 120.00029 * 180.02562 * 12 11 9 30 30 H 1.09005 * 117.49781 * 0.02562 * 17 8 7 31 31 H 1.08994 * 117.49850 * 145.01984 * 17 8 7 32 32 H 1.08999 * 117.50424 * 214.97959 * 18 8 7 33 33 H 1.09002 * 117.50377 * 359.97438 * 18 8 7 34 34 H 1.08002 * 119.99812 * 180.02562 * 19 7 6 35 35 H 0.96702 * 113.99838 * 269.98264 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.3616 1.8303 1.1991 5 6 2.0151 1.1631 2.5051 6 6 2.9944 3.0596 1.1974 7 6 3.3135 3.6744 0.0010 8 6 4.0028 5.0147 0.0049 9 6 5.2846 5.0839 0.7942 10 1 5.2635 5.3750 1.8339 11 6 6.4845 4.7757 0.1888 12 7 7.6169 5.0207 0.8110 13 14 6.5014 4.0102 -1.5150 14 1 6.4259 5.0821 -2.5401 15 1 7.7564 3.2377 -1.6981 16 1 5.3355 3.1022 -1.6614 17 6 3.1192 6.2635 -0.0186 18 6 3.9092 5.8608 -1.2663 19 6 3.0021 3.0625 -1.1989 20 6 2.3680 1.8306 -1.2042 21 8 2.0614 1.2270 -2.3837 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 2.8454 0.5322 2.8223 26 1 1.8266 1.9236 3.2629 27 1 1.1228 0.5509 2.3749 28 1 3.2391 3.5408 2.1327 29 1 8.4610 4.8042 0.3849 30 1 2.0394 6.1158 -0.0365 31 1 3.4653 7.1353 0.5365 32 1 4.7747 6.4680 -1.5317 33 1 3.3496 5.4480 -2.1057 34 1 3.2529 3.5449 -2.1321 35 1 1.1871 1.4565 -2.7274 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260360719.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:39 Heat of formation + Delta-G solvation = -52.826697 kcal Electronic energy + Delta-G solvation = -18364.974056 eV Core-core repulsion = 15521.566126 eV Total energy + Delta-G solvation = -2843.407930 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.45984 -39.30192 -38.24420 -36.93951 -34.29440 -32.86610 -30.50826 -28.52214 -27.73583 -27.11324 -23.76864 -23.62549 -22.53714 -20.68429 -19.22951 -18.68781 -18.13660 -17.34430 -16.95844 -16.51483 -16.09405 -15.59551 -15.06651 -14.82371 -14.80417 -14.32942 -14.21519 -13.82229 -13.26043 -13.18449 -13.10162 -12.67930 -12.56237 -12.38773 -12.17110 -12.07140 -11.86475 -11.52179 -11.07649 -10.78195 -10.65832 -10.43371 -9.49197 -9.17007 -8.33937 -6.38821 0.23940 0.30541 1.31481 1.39266 1.52298 2.35074 2.50231 2.84136 2.99978 3.16793 3.26502 3.86544 3.95317 4.28490 4.33617 4.40696 4.44816 4.46873 4.52525 4.53145 4.71280 4.75636 4.79564 4.85578 4.92292 5.03604 5.10061 5.25192 5.38501 5.46574 5.48226 5.68780 5.79482 5.84995 6.27653 6.42531 6.68302 6.89957 7.30727 8.80429 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.024959 B = 0.008142 C = 0.007742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.572284 B = 3438.216561 C = 3615.721296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.342 6.342 3 C 0.044 3.956 4 C -0.095 4.095 5 C -0.103 4.103 6 C -0.110 4.110 7 C -0.016 4.016 8 C 0.004 3.996 9 C -0.481 4.481 10 H 0.041 0.959 11 C 0.033 3.967 12 N -0.941 5.941 13 Si 0.916 3.084 14 H -0.260 1.260 15 H -0.305 1.305 16 H -0.230 1.230 17 C -0.150 4.150 18 C -0.193 4.193 19 C -0.152 4.152 20 C 0.084 3.916 21 O -0.497 6.497 22 H 0.113 0.887 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.123 0.877 29 H 0.265 0.735 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.129 0.871 35 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.304 -6.918 -3.353 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.259 6.259 3 C 0.000 4.000 4 C -0.096 4.096 5 C -0.159 4.159 6 C -0.128 4.128 7 C -0.017 4.017 8 C 0.004 3.996 9 C -0.519 4.519 10 H 0.059 0.941 11 C -0.166 4.166 12 N -0.581 5.581 13 Si 0.741 3.259 14 H -0.185 1.185 15 H -0.233 1.233 16 H -0.153 1.153 17 C -0.187 4.187 18 C -0.230 4.230 19 C -0.171 4.171 20 C 0.039 3.961 21 O -0.309 6.309 22 H 0.132 0.868 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.141 0.859 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.146 0.854 35 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -16.502 -7.357 -3.306 18.368 hybrid contribution 0.396 0.285 -0.671 0.830 sum -16.106 -7.072 -3.977 18.034 Atomic orbital electron populations 1.23216 0.77743 1.04619 1.01245 1.86074 1.21454 1.23994 1.94405 1.18746 1.01649 0.88228 0.91412 1.20316 0.99176 0.94116 0.95942 1.20707 1.02358 1.00563 0.92300 1.20845 0.98876 0.94768 0.98347 1.19607 0.93365 0.96253 0.92466 1.18054 0.95547 0.87308 0.98733 1.20330 0.89054 1.45384 0.97090 0.94053 1.25654 0.94882 0.94782 1.01288 1.70027 0.98282 1.48694 1.41060 0.86247 0.78246 0.80263 0.81179 1.18519 1.23297 1.15285 1.22898 0.97093 0.98289 1.00373 1.23066 1.02607 1.05151 0.92193 1.21284 1.02070 0.95009 0.98731 1.18683 1.00863 0.91332 0.85269 1.84839 1.40784 1.70139 1.35103 0.86846 0.92778 0.93047 0.91059 0.90181 0.90170 0.85895 0.92579 0.87804 0.89710 0.90670 0.88044 0.85371 0.74019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.76 113.37 1.22 1.69 16 2 O -0.34 -9.98 9.42 -79.67 -0.75 -10.73 16 3 C 0.04 1.45 5.71 22.57 0.13 1.58 16 4 C -0.09 -3.17 5.89 -19.79 -0.12 -3.29 16 5 C -0.10 -2.65 9.79 71.23 0.70 -1.96 16 6 C -0.11 -4.25 9.10 22.28 0.20 -4.04 16 7 C -0.02 -0.67 4.65 -19.86 -0.09 -0.76 16 8 C 0.00 0.20 1.11 -53.68 -0.06 0.14 16 9 C -0.48 -26.81 9.11 25.60 0.23 -26.58 16 10 H 0.04 2.55 8.06 -2.91 -0.02 2.52 16 11 C 0.03 1.89 5.46 84.66 0.46 2.36 16 12 N -0.94 -58.82 13.96 21.45 0.30 -58.52 16 13 Si 0.92 45.06 25.44 68.60 1.75 46.81 16 14 H -0.26 -12.06 7.09 99.48 0.71 -11.36 16 15 H -0.31 -15.48 7.11 99.48 0.71 -14.77 16 16 H -0.23 -10.75 4.59 99.48 0.46 -10.30 16 17 C -0.15 -5.62 9.94 30.62 0.30 -5.32 16 18 C -0.19 -7.66 7.36 30.62 0.23 -7.43 16 19 C -0.15 -5.73 7.29 22.35 0.16 -5.57 16 20 C 0.08 2.87 6.72 22.57 0.15 3.02 16 21 O -0.50 -14.65 13.29 -79.69 -1.06 -15.71 16 22 H 0.11 1.53 8.14 -2.39 -0.02 1.52 16 23 H 0.05 0.90 7.24 -2.39 -0.02 0.88 16 24 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.08 1.83 8.09 -2.39 -0.02 1.81 16 27 H 0.08 1.74 6.30 -2.39 -0.02 1.73 16 28 H 0.12 4.82 8.06 -2.91 -0.02 4.79 16 29 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 30 H 0.10 3.27 8.14 -2.38 -0.02 3.25 16 31 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 32 H 0.07 3.21 7.57 -2.39 -0.02 3.20 16 33 H 0.10 3.46 6.58 -2.39 -0.02 3.45 16 34 H 0.13 4.64 6.22 -2.91 -0.02 4.62 16 35 H 0.40 7.17 9.06 -74.06 -0.67 6.50 16 Total: -1.00 -69.59 289.96 3.93 -65.65 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.18 Total: 18.67 kcal Atomic # 6 Polarization: -49.69 SS G_CDS: 3.52 Total: -46.17 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.30 Total: -58.52 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -1.81 Total: -26.44 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.75 Total: 46.81 kcal Total: -69.59 3.93 -65.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260360719.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.826 kcal (2) G-P(sol) polarization free energy of solvation -69.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds