Wall clock time and date at job start Mon Mar 30 2020 05:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38272 * 119.98607 * 2 1 4 4 C 1.38209 * 120.14442 * 179.79182 * 3 2 1 5 5 C 1.50708 * 119.92924 * 180.26301 * 4 3 2 6 6 C 1.52996 * 109.46855 * 175.59942 * 5 4 3 7 7 C 1.52997 * 109.46594 * 295.59301 * 5 4 3 8 8 C 1.50698 * 109.47375 * 55.59594 * 5 4 3 9 9 H 1.08007 * 119.99778 * 0.10936 * 8 5 4 10 10 C 1.37870 * 119.99985 * 180.11119 * 8 5 4 11 11 N 1.31513 * 120.00265 * 0.02562 * 10 8 5 12 12 Si 1.86796 * 119.99986 * 179.97438 * 10 8 5 13 13 H 1.48503 * 109.47090 * 90.00186 * 12 10 8 14 14 H 1.48500 * 109.47568 * 210.00043 * 12 10 8 15 15 H 1.48501 * 109.47433 * 330.00057 * 12 10 8 16 16 C 1.38277 * 120.13987 * 0.44328 * 4 3 2 17 17 C 1.38499 * 120.03171 * 359.79501 * 16 4 3 18 18 C 1.38502 * 119.98217 * 180.27083 * 2 1 3 19 19 O 1.36499 * 131.54503 * 0.02562 * 18 2 1 20 20 C 1.43986 * 105.48867 * 162.72293 * 19 18 2 21 21 O 1.36498 * 131.53896 * 179.97438 * 17 16 4 22 22 H 1.08995 * 109.46940 * 269.72801 * 1 2 3 23 23 H 1.09004 * 109.46983 * 149.72660 * 1 2 3 24 24 H 1.09000 * 109.46658 * 29.72895 * 1 2 3 25 25 H 1.08002 * 119.92662 * 359.97438 * 3 2 1 26 26 H 1.08995 * 109.47530 * 59.99693 * 6 5 4 27 27 H 1.09002 * 109.47191 * 179.97438 * 6 5 4 28 28 H 1.09002 * 109.47449 * 299.99456 * 6 5 4 29 29 H 1.09004 * 109.47120 * 60.00569 * 7 5 4 30 30 H 1.09001 * 109.46942 * 179.97438 * 7 5 4 31 31 H 1.08997 * 109.47899 * 300.00369 * 7 5 4 32 32 H 0.96997 * 120.00229 * 180.02562 * 11 10 8 33 33 H 1.08005 * 119.98311 * 179.77169 * 16 4 3 34 34 H 1.09000 * 110.56672 * 268.56665 * 20 19 18 35 35 H 1.08996 * 110.69775 * 145.75766 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1976 0.0000 4 6 3.5802 1.2015 0.0043 5 6 4.3285 2.5096 0.0103 6 6 5.8298 2.2378 0.1250 7 6 4.0449 3.2652 -1.2895 8 6 3.8775 3.3411 1.1835 9 1 3.1255 2.9595 1.8584 10 6 4.4247 4.5887 1.3951 11 7 5.3399 5.0535 0.5730 12 14 3.8651 5.6196 2.8489 13 1 4.7184 5.3191 4.0265 14 1 3.9813 7.0603 2.5082 15 1 2.4506 5.2990 3.1678 16 6 4.2779 0.0076 -0.0005 17 6 3.5923 -1.1958 -0.0055 18 6 2.1992 -1.1997 -0.0057 19 8 1.7667 -2.4943 -0.0122 20 6 2.9017 -3.2768 -0.4278 21 8 4.0320 -2.4880 -0.0113 22 1 -0.3633 -0.0049 1.0276 23 1 -0.3633 -0.8876 -0.5181 24 1 -0.3633 0.8924 -0.5096 25 1 1.6567 2.1321 -0.0004 26 1 6.1560 1.6365 -0.7235 27 1 6.3711 3.1839 0.1288 28 1 6.0319 1.6995 1.0509 29 1 2.9753 3.4588 -1.3712 30 1 4.5857 4.2116 -1.2850 31 1 4.3711 2.6639 -2.1380 32 1 5.7251 5.9311 0.7221 33 1 5.3579 0.0136 -0.0009 34 1 2.9026 -3.4053 -1.5102 35 1 2.9056 -4.2455 0.0719 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260363780.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:57 Heat of formation + Delta-G solvation = -46.571495 kcal Electronic energy + Delta-G solvation = -18362.114134 eV Core-core repulsion = 15518.977450 eV Total energy + Delta-G solvation = -2843.136684 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.72239 -38.22879 -35.98868 -35.01633 -32.12600 -30.81691 -28.61291 -26.88874 -25.46309 -25.39253 -25.01812 -22.41952 -21.45501 -19.06545 -17.39100 -17.13855 -16.68743 -15.82844 -15.58104 -14.72327 -14.11147 -13.87044 -13.44335 -13.30519 -12.93908 -12.81328 -12.56222 -12.07124 -12.00381 -11.75798 -11.51676 -11.26812 -11.05119 -10.74444 -10.68655 -10.50085 -10.22875 -9.96881 -9.60990 -9.47544 -8.84706 -8.37655 -8.01631 -7.35930 -6.01330 -4.11586 1.80248 1.84200 3.17508 3.28385 3.35600 3.38889 3.80259 4.21855 4.42592 4.86433 4.97126 5.05534 5.25098 5.42425 5.52595 5.78544 5.88060 5.89602 5.96904 6.12584 6.18382 6.57812 6.66163 6.71823 6.78778 6.86454 6.97623 6.99521 7.18107 7.23953 7.37208 7.60544 7.65694 7.74821 8.02266 8.14772 8.39095 8.88449 9.53812 10.99766 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.030356 B = 0.006767 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.169962 B = 4136.902710 C = 4535.019222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.071 4.071 3 C -0.104 4.104 4 C -0.012 4.012 5 C 0.099 3.901 6 C -0.136 4.136 7 C -0.127 4.127 8 C -0.502 4.502 9 H 0.059 0.941 10 C 0.066 3.934 11 N -0.886 5.886 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.116 4.116 17 C 0.026 3.974 18 C -0.005 4.005 19 O -0.315 6.315 20 C 0.214 3.786 21 O -0.316 6.316 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.138 0.862 26 H 0.013 0.987 27 H 0.087 0.913 28 H 0.030 0.970 29 H 0.029 0.971 30 H 0.089 0.911 31 H 0.010 0.990 32 H 0.260 0.740 33 H 0.134 0.866 34 H 0.074 0.926 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.057 -10.099 -3.089 11.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.072 4.072 3 C -0.122 4.122 4 C -0.012 4.012 5 C 0.098 3.902 6 C -0.193 4.193 7 C -0.184 4.184 8 C -0.540 4.540 9 H 0.077 0.923 10 C -0.135 4.135 11 N -0.524 5.524 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.135 4.135 17 C -0.018 4.018 18 C -0.048 4.048 19 O -0.232 6.232 20 C 0.102 3.898 21 O -0.232 6.232 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.156 0.844 26 H 0.032 0.968 27 H 0.106 0.894 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.107 0.893 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.152 0.848 34 H 0.091 0.909 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.949 -10.131 -3.015 11.671 hybrid contribution -0.188 0.194 0.797 0.842 sum -5.137 -9.936 -2.218 11.404 Atomic orbital electron populations 1.20649 0.91041 1.02336 1.02141 1.18909 0.95891 0.89006 1.03378 1.20819 0.94227 0.96039 1.01143 1.20457 0.93444 0.95456 0.91823 1.17254 0.91318 0.86457 0.95138 1.21922 0.98693 1.01853 0.96853 1.21815 0.99700 1.02246 0.94680 1.21069 1.22654 1.00400 1.09843 0.92316 1.24893 0.94864 0.97498 0.96249 1.69804 1.27530 1.18504 1.36570 0.86590 0.79184 0.79405 0.82825 1.20735 1.21241 1.19896 1.20272 1.00813 0.87577 1.04795 1.19805 0.91530 0.85193 1.05249 1.19400 0.91467 0.84802 1.09161 1.87252 1.35466 1.15066 1.85442 1.25413 0.71908 0.93235 0.99278 1.87296 1.35635 1.15184 1.85134 0.91467 0.92043 0.91298 0.84428 0.96807 0.89418 0.95137 0.95180 0.89287 0.97075 0.92936 0.84823 0.90865 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 10.01 36.01 0.36 -1.14 16 2 C -0.07 -1.28 5.89 -104.51 -0.62 -1.90 16 3 C -0.10 -2.06 8.25 -39.58 -0.33 -2.38 16 4 C -0.01 -0.25 4.72 -104.61 -0.49 -0.74 16 5 C 0.10 2.32 0.58 -156.81 -0.09 2.22 16 6 C -0.14 -3.14 6.92 37.16 0.26 -2.89 16 7 C -0.13 -2.91 8.10 37.16 0.30 -2.61 16 8 C -0.50 -12.93 7.57 -34.44 -0.26 -13.19 16 9 H 0.06 1.53 7.47 -52.48 -0.39 1.14 16 10 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 11 N -0.89 -23.44 9.35 55.43 0.52 -22.92 16 12 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 C -0.12 -2.36 9.00 -39.47 -0.36 -2.72 16 17 C 0.03 0.50 7.15 -39.09 -0.28 0.22 16 18 C 0.00 -0.09 6.81 -39.09 -0.27 -0.36 16 19 O -0.32 -5.20 11.39 -45.69 -0.52 -5.72 16 20 C 0.21 2.84 8.89 101.05 0.90 3.74 16 21 O -0.32 -5.46 11.40 -45.68 -0.52 -5.98 16 22 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 24 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 25 H 0.14 2.66 7.71 -52.49 -0.40 2.26 16 26 H 0.01 0.28 7.29 -51.93 -0.38 -0.10 16 27 H 0.09 2.21 6.08 -51.93 -0.32 1.89 16 28 H 0.03 0.69 7.73 -51.93 -0.40 0.29 16 29 H 0.03 0.65 7.65 -51.93 -0.40 0.25 16 30 H 0.09 2.22 6.06 -51.93 -0.31 1.91 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.26 6.65 8.31 -40.82 -0.34 6.32 16 33 H 0.13 2.64 5.89 -52.48 -0.31 2.33 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 284.97 15.07 4.29 4.29 Total: -1.00 -27.76 284.97 -6.79 -34.56 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -4.58 Total: 0.41 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -0.96 Total: -20.11 kcal Atomic # 7 Polarization: -23.44 SS G_CDS: 0.52 Total: -22.92 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -1.04 Total: -11.71 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.76 -6.79 -34.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260363780.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.015 kcal (2) G-P(sol) polarization free energy of solvation -27.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds