Wall clock time and date at job start Mon Mar 30 2020 05:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38272 * 119.98607 * 2 1 4 4 C 1.38209 * 120.14442 * 179.79182 * 3 2 1 5 5 C 1.50708 * 119.92924 * 180.26301 * 4 3 2 6 6 C 1.52996 * 109.46855 * 175.59942 * 5 4 3 7 7 C 1.52997 * 109.46594 * 295.59301 * 5 4 3 8 8 C 1.50698 * 109.47375 * 55.59594 * 5 4 3 9 9 H 1.08007 * 119.99778 * 0.10936 * 8 5 4 10 10 C 1.37870 * 119.99985 * 180.11119 * 8 5 4 11 11 N 1.31513 * 120.00265 * 0.02562 * 10 8 5 12 12 Si 1.86796 * 119.99986 * 179.97438 * 10 8 5 13 13 H 1.48503 * 109.47090 * 90.00186 * 12 10 8 14 14 H 1.48500 * 109.47568 * 210.00043 * 12 10 8 15 15 H 1.48501 * 109.47433 * 330.00057 * 12 10 8 16 16 C 1.38277 * 120.13987 * 0.44328 * 4 3 2 17 17 C 1.38499 * 120.03171 * 359.79501 * 16 4 3 18 18 C 1.38502 * 119.98217 * 180.27083 * 2 1 3 19 19 O 1.36499 * 131.54503 * 0.02562 * 18 2 1 20 20 C 1.43986 * 105.48867 * 162.72293 * 19 18 2 21 21 O 1.36498 * 131.53896 * 179.97438 * 17 16 4 22 22 H 1.08995 * 109.46940 * 269.72801 * 1 2 3 23 23 H 1.09004 * 109.46983 * 149.72660 * 1 2 3 24 24 H 1.09000 * 109.46658 * 29.72895 * 1 2 3 25 25 H 1.08002 * 119.92662 * 359.97438 * 3 2 1 26 26 H 1.08995 * 109.47530 * 59.99693 * 6 5 4 27 27 H 1.09002 * 109.47191 * 179.97438 * 6 5 4 28 28 H 1.09002 * 109.47449 * 299.99456 * 6 5 4 29 29 H 1.09004 * 109.47120 * 60.00569 * 7 5 4 30 30 H 1.09001 * 109.46942 * 179.97438 * 7 5 4 31 31 H 1.08997 * 109.47899 * 300.00369 * 7 5 4 32 32 H 0.96997 * 120.00229 * 180.02562 * 11 10 8 33 33 H 1.08005 * 119.98311 * 179.77169 * 16 4 3 34 34 H 1.09000 * 110.56672 * 268.56665 * 20 19 18 35 35 H 1.08996 * 110.69775 * 145.75766 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1976 0.0000 4 6 3.5802 1.2015 0.0043 5 6 4.3285 2.5096 0.0103 6 6 5.8298 2.2378 0.1250 7 6 4.0449 3.2652 -1.2895 8 6 3.8775 3.3411 1.1835 9 1 3.1255 2.9595 1.8584 10 6 4.4247 4.5887 1.3951 11 7 5.3399 5.0535 0.5730 12 14 3.8651 5.6196 2.8489 13 1 4.7184 5.3191 4.0265 14 1 3.9813 7.0603 2.5082 15 1 2.4506 5.2990 3.1678 16 6 4.2779 0.0076 -0.0005 17 6 3.5923 -1.1958 -0.0055 18 6 2.1992 -1.1997 -0.0057 19 8 1.7667 -2.4943 -0.0122 20 6 2.9017 -3.2768 -0.4278 21 8 4.0320 -2.4880 -0.0113 22 1 -0.3633 -0.0049 1.0276 23 1 -0.3633 -0.8876 -0.5181 24 1 -0.3633 0.8924 -0.5096 25 1 1.6567 2.1321 -0.0004 26 1 6.1560 1.6365 -0.7235 27 1 6.3711 3.1839 0.1288 28 1 6.0319 1.6995 1.0509 29 1 2.9753 3.4588 -1.3712 30 1 4.5857 4.2116 -1.2850 31 1 4.3711 2.6639 -2.1380 32 1 5.7251 5.9311 0.7221 33 1 5.3579 0.0136 -0.0009 34 1 2.9026 -3.4053 -1.5102 35 1 2.9056 -4.2455 0.0719 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260363780.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:57 Heat of formation + Delta-G solvation = -61.031083 kcal Electronic energy + Delta-G solvation = -18362.741149 eV Core-core repulsion = 15518.977450 eV Total energy + Delta-G solvation = -2843.763699 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.03916 -39.77018 -37.32345 -36.66456 -33.79395 -32.42449 -30.10233 -28.39432 -27.23045 -26.90629 -26.52023 -23.94052 -22.93428 -20.70432 -18.85314 -18.49829 -18.09053 -17.44213 -17.16431 -16.46124 -15.55385 -15.19370 -15.06806 -14.68520 -14.39487 -14.34405 -13.88826 -13.63079 -13.51290 -13.19695 -13.09270 -12.87394 -12.78404 -12.57675 -12.40591 -12.17871 -12.01206 -11.59805 -11.33833 -11.23245 -10.69290 -10.34450 -9.46899 -8.81816 -7.97757 -6.13674 0.32168 0.36617 1.44831 1.48086 1.55810 1.88801 2.46760 2.63489 2.75430 3.25818 3.58849 3.88880 4.01673 4.14282 4.29276 4.31504 4.48892 4.60563 4.71209 4.81298 4.83407 4.90546 4.99259 5.07022 5.15808 5.23195 5.34447 5.42806 5.50737 5.60185 5.63739 5.74121 5.79855 6.16941 6.21908 6.31298 6.47043 6.90374 7.53518 9.01112 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.030356 B = 0.006767 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.169962 B = 4136.902710 C = 4535.019222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.070 4.070 3 C -0.112 4.112 4 C -0.031 4.031 5 C 0.093 3.907 6 C -0.126 4.126 7 C -0.118 4.118 8 C -0.513 4.513 9 H 0.049 0.951 10 C 0.027 3.973 11 N -0.903 5.903 12 Si 0.944 3.056 13 H -0.283 1.283 14 H -0.284 1.284 15 H -0.271 1.271 16 C -0.130 4.130 17 C 0.021 3.979 18 C -0.005 4.005 19 O -0.319 6.319 20 C 0.204 3.796 21 O -0.328 6.328 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.136 0.864 26 H 0.030 0.970 27 H 0.064 0.936 28 H 0.024 0.976 29 H 0.032 0.968 30 H 0.065 0.935 31 H 0.023 0.977 32 H 0.260 0.740 33 H 0.131 0.869 34 H 0.100 0.900 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.408 -11.622 -3.126 13.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.071 4.071 3 C -0.130 4.130 4 C -0.032 4.032 5 C 0.093 3.907 6 C -0.184 4.184 7 C -0.176 4.176 8 C -0.551 4.551 9 H 0.068 0.932 10 C -0.173 4.173 11 N -0.542 5.542 12 Si 0.771 3.229 13 H -0.209 1.209 14 H -0.210 1.210 15 H -0.195 1.195 16 C -0.149 4.149 17 C -0.023 4.023 18 C -0.049 4.049 19 O -0.236 6.236 20 C 0.093 3.907 21 O -0.245 6.245 22 H 0.095 0.905 23 H 0.092 0.908 24 H 0.102 0.898 25 H 0.154 0.846 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.149 0.851 34 H 0.117 0.883 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.305 -11.671 -3.058 13.613 hybrid contribution 0.220 0.519 0.781 0.963 sum -6.085 -11.152 -2.277 12.907 Atomic orbital electron populations 1.20717 0.88307 1.03704 1.03162 1.19210 0.97846 0.88221 1.01803 1.20829 0.93661 0.96856 1.01667 1.20263 0.94179 0.94760 0.93968 1.17213 0.91494 0.87549 0.94481 1.21784 0.98655 1.00678 0.97254 1.21676 0.99513 1.01221 0.95152 1.21288 1.22423 1.00932 1.10506 0.93230 1.25485 0.95096 0.98470 0.98227 1.69923 1.28132 1.18613 1.37575 0.85775 0.78765 0.78140 0.80245 1.20922 1.20964 1.19549 1.20204 1.00770 0.88044 1.05847 1.19841 0.92021 0.85694 1.04757 1.19558 0.91214 0.85831 1.08262 1.87239 1.36716 1.14138 1.85532 1.26063 0.69611 0.93478 1.01531 1.87276 1.37459 1.14478 1.85301 0.90468 0.90811 0.89841 0.84592 0.95140 0.91734 0.95730 0.94867 0.91588 0.95820 0.93069 0.85090 0.88280 0.82023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.65 10.01 71.24 0.71 -1.94 16 2 C -0.07 -2.40 5.89 -19.79 -0.12 -2.51 16 3 C -0.11 -4.35 8.25 22.27 0.18 -4.16 16 4 C -0.03 -1.34 4.72 -19.86 -0.09 -1.44 16 5 C 0.09 4.41 0.58 -53.67 -0.03 4.38 16 6 C -0.13 -5.94 6.92 71.98 0.50 -5.44 16 7 C -0.12 -5.45 8.10 71.98 0.58 -4.87 16 8 C -0.51 -26.76 7.57 25.60 0.19 -26.56 16 9 H 0.05 2.61 7.47 -2.91 -0.02 2.59 16 10 C 0.03 1.39 5.15 84.65 0.44 1.82 16 11 N -0.90 -48.55 9.35 21.44 0.20 -48.35 16 12 Si 0.94 42.22 29.54 68.60 2.03 44.25 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 14 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 15 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 16 C -0.13 -5.27 9.00 22.34 0.20 -5.07 16 17 C 0.02 0.78 7.15 22.59 0.16 0.94 16 18 C 0.00 -0.17 6.81 22.59 0.15 -0.02 16 19 O -0.32 -9.55 11.39 -76.04 -0.87 -10.42 16 20 C 0.20 4.69 8.89 113.37 1.01 5.70 16 21 O -0.33 -10.66 11.40 -76.02 -0.87 -11.52 16 22 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 24 H 0.08 1.91 8.08 -2.39 -0.02 1.89 16 25 H 0.14 5.21 7.71 -2.91 -0.02 5.19 16 26 H 0.03 1.28 7.29 -2.39 -0.02 1.26 16 27 H 0.06 3.33 6.08 -2.39 -0.01 3.31 16 28 H 0.02 1.12 7.73 -2.39 -0.02 1.11 16 29 H 0.03 1.45 7.65 -2.38 -0.02 1.43 16 30 H 0.07 3.35 6.06 -2.39 -0.01 3.33 16 31 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 33 H 0.13 5.21 5.89 -2.91 -0.02 5.19 16 34 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.16 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -58.95 284.97 5.47 -53.48 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.09 Total: 11.74 kcal Atomic # 6 Polarization: -43.06 SS G_CDS: 3.89 Total: -39.17 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.20 Total: -48.35 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -1.73 Total: -21.94 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -58.95 5.47 -53.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260363780.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.554 kcal (2) G-P(sol) polarization free energy of solvation -58.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds