Wall clock time and date at job start Mon Mar 30 2020 06:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.72670 * 2 1 4 4 C 1.53407 * 109.70236 * 239.42011 * 2 1 3 5 5 O 1.42823 * 108.37716 * 175.58897 * 4 2 1 6 6 C 1.35843 * 117.86056 * 49.20358 * 5 4 2 7 7 C 1.39145 * 118.49902 * 163.02757 * 6 5 4 8 8 C 1.37973 * 120.21389 * 179.55993 * 7 6 5 9 9 C 1.38289 * 119.95822 * 0.03422 * 8 7 6 10 10 C 1.38105 * 119.98160 * 0.07124 * 9 8 7 11 11 C 1.38377 * 121.80174 * 342.74210 * 6 5 4 12 12 C 1.50772 * 121.40420 * 0.51688 * 11 6 5 13 13 O 1.42898 * 109.43219 * 102.19650 * 12 11 6 14 14 C 1.50700 * 109.43395 * 222.11117 * 12 11 6 15 15 H 1.07996 * 120.00561 * 56.48925 * 14 12 11 16 16 C 1.37878 * 119.99592 * 236.21761 * 14 12 11 17 17 N 1.31511 * 120.00127 * 161.38540 * 16 14 12 18 18 Si 1.86806 * 120.00136 * 341.37445 * 16 14 12 19 19 H 1.48503 * 109.46741 * 86.81401 * 18 16 14 20 20 H 1.48499 * 109.47200 * 206.81682 * 18 16 14 21 21 H 1.48504 * 109.46983 * 326.82151 * 18 16 14 22 22 H 1.08999 * 109.47725 * 299.42364 * 1 2 3 23 23 H 1.08996 * 109.46920 * 59.42997 * 1 2 3 24 24 H 1.09002 * 109.47061 * 179.42307 * 1 2 3 25 25 H 1.09002 * 109.47143 * 180.57101 * 3 2 1 26 26 H 1.08996 * 109.46857 * 300.57391 * 3 2 1 27 27 H 1.09002 * 109.47354 * 60.57682 * 3 2 1 28 28 H 1.08997 * 109.68642 * 55.86249 * 4 2 1 29 29 H 1.09008 * 109.71157 * 295.32490 * 4 2 1 30 30 H 1.08000 * 119.89319 * 359.60214 * 7 6 5 31 31 H 1.08003 * 120.02168 * 180.02562 * 8 7 6 32 32 H 1.08000 * 120.00820 * 180.02562 * 9 8 7 33 33 H 1.08004 * 119.84031 * 179.97438 * 10 9 8 34 34 H 0.96697 * 114.00139 * 53.33373 * 13 12 11 35 35 H 0.97001 * 120.00233 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0464 1.4402 0.0000 4 6 2.0471 -0.7348 -1.2434 5 8 3.4712 -0.6289 -1.2692 6 6 4.1512 -0.9349 -0.1337 7 6 5.5165 -1.1873 -0.2250 8 6 6.2434 -1.4926 0.9073 9 6 5.6143 -1.5489 2.1375 10 6 4.2589 -1.3011 2.2315 11 6 3.5239 -0.9946 1.0983 12 6 2.0458 -0.7331 1.2408 13 8 1.3544 -1.9759 1.3797 14 6 1.8023 0.1156 2.4621 15 1 2.2945 1.0716 2.5623 16 6 0.9466 -0.3261 3.4489 17 7 1.0019 0.2021 4.6520 18 14 -0.2915 -1.6745 3.0769 19 1 0.3434 -3.0007 3.2856 20 1 -1.4602 -1.5371 3.9827 21 1 -0.7418 -1.5578 1.6666 22 1 -0.3634 0.5048 0.8951 23 1 -0.3633 0.5226 -0.8848 24 1 -0.3633 -1.0276 -0.0103 25 1 3.1363 1.4354 -0.0102 26 1 1.6770 1.9586 -0.8848 27 1 1.6938 1.9527 0.8951 28 1 1.6287 -0.2781 -2.1403 29 1 1.7578 -1.7847 -1.1969 30 1 6.0089 -1.1435 -1.1852 31 1 7.3031 -1.6875 0.8328 32 1 6.1826 -1.7874 3.0244 33 1 3.7698 -1.3461 3.1934 34 1 1.6968 -2.5396 2.0868 35 1 0.3997 -0.1083 5.3462 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260646927.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:39 Heat of formation + Delta-G solvation = -52.895933 kcal Electronic energy + Delta-G solvation = -19541.901579 eV Core-core repulsion = 16698.490647 eV Total energy + Delta-G solvation = -2843.410932 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -40.53526 -37.18854 -36.85853 -33.83570 -32.28111 -30.62973 -29.67331 -26.74023 -26.31118 -26.12976 -23.27348 -21.68526 -21.09730 -18.06864 -17.35521 -17.10861 -16.06288 -15.81957 -15.31969 -14.90876 -14.33133 -14.13704 -13.27273 -13.20455 -12.71091 -12.56173 -12.14198 -12.05223 -12.02494 -11.74998 -11.38727 -11.25279 -10.87993 -10.82174 -10.60025 -10.26550 -10.03707 -9.85839 -9.69065 -9.24395 -8.40917 -8.27380 -8.17789 -7.57186 -6.20971 -4.23235 1.93689 2.03681 3.33726 3.55319 3.74220 3.87206 4.37045 4.47231 4.93437 5.12331 5.42315 5.44464 5.50874 5.54545 5.66938 5.83351 5.90586 6.00033 6.02850 6.17590 6.34356 6.36284 6.42634 6.61197 6.69869 6.73362 6.85159 6.89514 7.08187 7.10791 7.16195 7.32401 7.41627 7.53033 8.03165 8.09617 8.49433 8.82030 9.41791 10.87023 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.022937 B = 0.012411 C = 0.009685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.456304 B = 2255.439810 C = 2890.355062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.078 4.078 3 C -0.124 4.124 4 C 0.066 3.934 5 O -0.322 6.322 6 C 0.132 3.868 7 C -0.169 4.169 8 C -0.098 4.098 9 C -0.169 4.169 10 C -0.053 4.053 11 C -0.158 4.158 12 C 0.273 3.727 13 O -0.549 6.549 14 C -0.544 4.544 15 H 0.083 0.917 16 C 0.064 3.936 17 N -0.880 5.880 18 Si 0.947 3.053 19 H -0.309 1.309 20 H -0.336 1.336 21 H -0.256 1.256 22 H 0.070 0.930 23 H 0.036 0.964 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.040 0.960 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.134 0.866 34 H 0.370 0.630 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.207 -3.096 -8.096 9.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.079 4.079 3 C -0.182 4.182 4 C -0.009 4.009 5 O -0.236 6.236 6 C 0.087 3.913 7 C -0.188 4.188 8 C -0.116 4.116 9 C -0.188 4.188 10 C -0.071 4.071 11 C -0.159 4.159 12 C 0.234 3.766 13 O -0.359 6.359 14 C -0.581 4.581 15 H 0.101 0.899 16 C -0.140 4.140 17 N -0.514 5.514 18 Si 0.787 3.213 19 H -0.239 1.239 20 H -0.270 1.270 21 H -0.182 1.182 22 H 0.089 0.911 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.152 0.848 34 H 0.220 0.780 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.892 -2.740 -8.590 9.820 hybrid contribution -0.349 -0.858 0.621 1.115 sum 3.543 -3.598 -7.969 9.434 Atomic orbital electron populations 1.21785 0.93574 1.01961 1.01014 1.21214 0.97077 0.95958 0.93652 1.21677 1.00456 0.94525 1.01502 1.23153 0.77678 1.00658 0.99390 1.85862 1.20882 1.83628 1.33225 1.18822 0.91351 0.95723 0.85453 1.20420 0.91970 1.07278 0.99088 1.20751 0.98865 0.99731 0.92290 1.21011 0.95242 1.05295 0.97219 1.21175 0.93043 0.94003 0.98839 1.21100 0.99771 1.03456 0.91608 1.18055 0.82458 0.81496 0.94607 1.86211 1.58572 1.32371 1.58758 1.21022 1.29432 1.06704 1.00922 0.89861 1.25226 0.97225 0.97616 0.93934 1.70043 1.36415 1.43449 1.01527 0.85758 0.79146 0.78909 0.77521 1.23914 1.27006 1.18213 0.91128 0.94515 0.91912 0.93328 0.94142 0.90488 0.88874 0.91981 0.86363 0.86501 0.86715 0.84783 0.77967 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 6.84 37.15 0.25 -2.17 16 2 C -0.08 -1.55 0.41 -154.26 -0.06 -1.62 16 3 C -0.12 -2.42 7.68 37.16 0.29 -2.13 16 4 C 0.07 1.18 5.81 37.37 0.22 1.40 16 5 O -0.32 -6.13 9.61 -19.25 -0.18 -6.31 16 6 C 0.13 2.59 5.66 -39.19 -0.22 2.37 16 7 C -0.17 -2.92 9.94 -39.34 -0.39 -3.31 16 8 C -0.10 -1.57 10.04 -39.66 -0.40 -1.97 16 9 C -0.17 -2.93 10.04 -39.61 -0.40 -3.32 16 10 C -0.05 -1.06 9.00 -39.53 -0.36 -1.42 16 11 C -0.16 -3.32 4.57 -104.44 -0.48 -3.79 16 12 C 0.27 6.00 0.31 -92.85 -0.03 5.97 16 13 O -0.55 -11.96 6.97 -35.23 -0.25 -12.21 16 14 C -0.54 -13.81 5.66 -34.44 -0.20 -14.00 16 15 H 0.08 2.36 7.06 -52.49 -0.37 1.99 16 16 C 0.06 1.71 5.45 -17.82 -0.10 1.61 16 17 N -0.88 -25.15 13.96 55.43 0.77 -24.37 16 18 Si 0.95 22.42 23.29 -169.99 -3.96 18.46 16 19 H -0.31 -7.08 6.52 56.52 0.37 -6.71 16 20 H -0.34 -8.46 7.11 56.52 0.40 -8.06 16 21 H -0.26 -5.81 4.05 56.52 0.23 -5.58 16 22 H 0.07 1.49 6.91 -51.93 -0.36 1.14 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 1.24 5.99 -51.93 -0.31 0.93 16 25 H 0.05 0.98 6.54 -51.93 -0.34 0.64 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.08 1.63 6.49 -51.93 -0.34 1.29 16 28 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 29 H 0.06 1.12 7.87 -51.92 -0.41 0.71 16 30 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 32 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.13 2.91 7.36 -52.48 -0.39 2.52 16 34 H 0.37 7.78 6.59 45.56 0.30 8.08 16 35 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 264.65 15.07 3.99 3.99 Total: -1.00 -28.31 264.65 -5.59 -33.90 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -4.09 Total: 8.94 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -1.87 Total: -22.39 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.77 Total: -24.37 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.43 Total: -18.52 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -3.96 Total: 18.46 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.31 -5.59 -33.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260646927.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.995 kcal (2) G-P(sol) polarization free energy of solvation -28.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds