Wall clock time and date at job start Mon Mar 30 2020 06:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47057 * 2 1 4 4 C 1.53000 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47575 * 304.99893 * 4 3 2 6 6 C 1.52996 * 109.47244 * 65.00455 * 4 3 2 7 7 C 1.53004 * 109.47232 * 185.00186 * 4 3 2 8 8 O 1.42901 * 109.47268 * 175.00300 * 7 4 3 9 9 C 1.35674 * 116.99884 * 179.97438 * 8 7 4 10 10 C 1.39309 * 119.81993 * 359.72590 * 9 8 7 11 11 C 1.36433 * 120.18465 * 179.76331 * 10 9 8 12 12 C 1.40837 * 119.81162 * 0.50707 * 11 10 9 13 13 C 1.41219 * 120.17696 * 179.72243 * 12 11 10 14 14 H 1.07995 * 119.99937 * 24.56970 * 13 12 11 15 15 C 1.39895 * 119.99700 * 204.56367 * 13 12 11 16 16 N 1.30881 * 119.99752 * 17.94511 * 15 13 12 17 17 Si 1.86801 * 119.99937 * 197.94477 * 15 13 12 18 18 H 1.48503 * 109.47032 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46818 * 119.99829 * 17 15 13 20 20 H 1.48494 * 109.47088 * 240.00148 * 17 15 13 21 21 C 1.40830 * 119.64045 * 359.74395 * 12 11 10 22 22 C 1.36436 * 119.81397 * 0.02562 * 21 12 11 23 23 H 1.09008 * 109.47401 * 60.00014 * 1 2 3 24 24 H 1.08996 * 109.47462 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47343 * 300.00057 * 1 2 3 26 26 H 1.09003 * 109.46668 * 240.00270 * 2 1 3 27 27 H 1.08997 * 109.46906 * 119.99989 * 2 1 3 28 28 H 1.09005 * 109.47487 * 60.00149 * 3 2 1 29 29 H 1.09006 * 109.47460 * 299.99980 * 3 2 1 30 30 H 1.09005 * 109.47610 * 180.02562 * 6 4 3 31 31 H 1.09007 * 109.46691 * 300.00165 * 6 4 3 32 32 H 1.08999 * 109.47764 * 59.99324 * 6 4 3 33 33 H 1.08996 * 109.47055 * 54.99909 * 7 4 3 34 34 H 1.09000 * 109.46921 * 295.00192 * 7 4 3 35 35 H 1.07998 * 119.90559 * 0.02562 * 10 9 8 36 36 H 1.08003 * 120.09608 * 180.25279 * 11 10 9 37 37 H 0.97000 * 119.99608 * 179.97438 * 16 15 13 38 38 H 1.08000 * 120.09060 * 179.97438 * 21 12 11 39 39 H 1.07995 * 119.91028 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9337 0.8529 0.8409 6 6 4.0794 0.8331 -1.3083 7 6 4.0800 2.8794 0.1251 8 8 5.5043 2.8709 0.2416 9 6 6.1196 4.0741 0.3618 10 6 5.3617 5.2429 0.3615 11 6 5.9724 6.4565 0.4867 12 6 7.3740 6.5261 0.6059 13 6 8.0146 7.7785 0.7301 14 1 7.4729 8.6253 1.1248 15 6 9.3509 7.9221 0.3420 16 7 9.9029 7.0336 -0.4446 17 14 10.3473 9.3820 0.9464 18 1 9.4983 10.2343 1.8172 19 1 11.5180 8.8960 1.7201 20 1 10.8178 10.1759 -0.2170 21 6 8.1332 5.3400 0.6001 22 6 7.5066 4.1341 0.4787 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 5.1695 0.8327 -1.3086 31 1 3.7160 -0.1907 -1.3979 32 1 3.7157 1.4226 -2.1499 33 1 3.6458 3.3429 1.0109 34 1 3.7913 3.4462 -0.7600 35 1 4.2874 5.1880 0.2660 36 1 5.3830 7.3616 0.4904 37 1 10.8294 7.1334 -0.7140 38 1 9.2085 5.3849 0.6906 39 1 8.0873 3.2236 0.4736 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051320486.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:14 Heat of formation + Delta-G solvation = -52.844974 kcal Electronic energy + Delta-G solvation = -17380.600175 eV Core-core repulsion = 14673.024547 eV Total energy + Delta-G solvation = -2707.575628 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.92208 -37.14899 -35.87099 -33.33725 -32.23540 -29.73126 -28.95862 -26.79387 -26.27575 -24.58994 -22.05804 -20.93997 -20.47105 -19.74991 -17.28980 -16.90843 -15.74780 -15.23878 -15.01021 -14.66212 -14.11522 -13.90400 -13.47740 -13.31672 -12.88409 -12.51609 -12.19506 -12.11930 -11.90924 -11.81720 -11.62067 -11.32088 -11.13020 -10.99359 -10.85664 -10.72401 -10.63737 -10.45420 -10.29201 -9.87838 -9.76019 -9.30185 -8.98778 -7.60679 -6.98845 -6.69561 -4.22313 2.79732 2.98702 3.10307 3.15596 3.23139 3.97181 4.07395 4.64572 4.79314 4.86860 4.94805 5.08690 5.25309 5.42434 5.54652 5.64445 5.67489 5.70048 5.76045 5.85825 5.90289 5.95282 6.04146 6.08582 6.14203 6.17536 6.26832 6.39081 6.47888 6.77503 7.01748 7.14980 7.22314 7.51078 7.59377 7.83974 8.03818 8.23887 8.50476 8.69677 8.93048 9.02658 10.24833 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.066095 B = 0.003621 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.531984 B = 7731.011681 C = 8004.973075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.113 4.113 4 C -0.090 4.090 5 H 0.076 0.924 6 C -0.144 4.144 7 C 0.073 3.927 8 O -0.327 6.327 9 C -0.006 4.006 10 C -0.168 4.168 11 C -0.198 4.198 12 C 0.087 3.913 13 C -0.464 4.464 14 H 0.076 0.924 15 C 0.074 3.926 16 N -0.800 5.800 17 Si 0.906 3.094 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.276 1.276 21 C -0.134 4.134 22 C -0.122 4.122 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.279 0.721 38 H 0.125 0.875 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.743 -9.342 0.122 14.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.108 4.108 5 H 0.095 0.905 6 C -0.202 4.202 7 C -0.004 4.004 8 O -0.243 6.243 9 C -0.049 4.049 10 C -0.187 4.187 11 C -0.217 4.217 12 C 0.085 3.915 13 C -0.494 4.494 14 H 0.094 0.906 15 C -0.142 4.142 16 N -0.426 5.426 17 Si 0.731 3.269 18 H -0.185 1.185 19 H -0.198 1.198 20 H -0.201 1.201 21 C -0.153 4.153 22 C -0.140 4.140 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.143 0.857 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.437 -9.564 -0.012 14.156 hybrid contribution 0.311 0.919 0.127 0.979 sum -10.126 -8.644 0.115 13.314 Atomic orbital electron populations 1.21783 0.96065 1.01378 1.01779 1.21556 0.95533 0.96874 1.02223 1.21589 0.94279 0.96993 1.02234 1.21131 0.94639 0.95582 0.99485 0.90529 1.21819 1.02104 0.99832 0.96406 1.22489 0.81475 0.96315 1.00075 1.85802 1.19142 1.29004 1.90378 1.18608 0.91929 0.82889 1.11452 1.20419 0.97288 0.93130 1.07863 1.20566 0.95158 0.95169 1.10856 1.17596 0.90745 0.93410 0.89792 1.19483 0.95669 0.96319 1.37921 0.90566 1.25876 0.98141 0.97462 0.92721 1.69847 1.14001 1.34277 1.24467 0.86298 0.79772 0.81359 0.79478 1.18505 1.19767 1.20105 1.20973 1.00092 0.90450 1.03793 1.19836 0.90636 0.97776 1.05798 0.92799 0.92942 0.92814 0.91675 0.92027 0.91851 0.91798 0.91758 0.92894 0.92975 0.93435 0.93343 0.88854 0.88797 0.91029 0.85709 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.11 5.69 -26.73 -0.15 -1.26 16 3 C -0.11 -1.18 4.68 -26.73 -0.13 -1.31 16 4 C -0.09 -1.16 2.63 -90.62 -0.24 -1.40 16 5 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 6 C -0.14 -1.81 8.84 37.16 0.33 -1.48 16 7 C 0.07 1.19 4.11 37.16 0.15 1.34 16 8 O -0.33 -6.82 9.66 -18.72 -0.18 -7.00 16 9 C -0.01 -0.13 6.71 -38.78 -0.26 -0.39 16 10 C -0.17 -3.91 8.96 -39.83 -0.36 -4.27 16 11 C -0.20 -4.97 9.74 -39.25 -0.38 -5.35 16 12 C 0.09 2.36 5.57 -106.80 -0.60 1.76 16 13 C -0.46 -12.49 9.04 -37.83 -0.34 -12.83 16 14 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 15 C 0.07 1.90 5.13 -17.34 -0.09 1.81 16 16 N -0.80 -20.96 10.96 55.55 0.61 -20.35 16 17 Si 0.91 18.89 29.60 -169.99 -5.03 13.86 16 18 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 20 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 21 C -0.13 -3.55 8.64 -39.25 -0.34 -3.89 16 22 C -0.12 -3.01 9.92 -39.83 -0.40 -3.40 16 23 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.92 7.82 -51.93 -0.41 0.52 16 31 H 0.05 0.55 6.56 -51.93 -0.34 0.21 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.76 7.66 -51.93 -0.40 0.37 16 34 H 0.05 0.79 7.63 -51.93 -0.40 0.40 16 35 H 0.09 1.90 6.27 -52.49 -0.33 1.57 16 36 H 0.09 2.20 8.06 -52.48 -0.42 1.78 16 37 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 38 H 0.13 3.38 6.16 -52.49 -0.32 3.06 16 39 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 317.26 15.07 4.78 4.78 Total: -1.00 -28.02 317.26 -8.56 -36.58 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.31 Total: 3.64 kcal Atomic # 6 Polarization: -29.07 SS G_CDS: -2.43 Total: -31.50 kcal Atomic # 7 Polarization: -20.96 SS G_CDS: 0.61 Total: -20.35 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.18 Total: -7.00 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.02 -8.56 -36.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051320486.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.265 kcal (2) G-P(sol) polarization free energy of solvation -28.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds