Wall clock time and date at job start Mon Mar 30 2020 06:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47057 * 2 1 4 4 C 1.53000 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47575 * 304.99893 * 4 3 2 6 6 C 1.52996 * 109.47244 * 65.00455 * 4 3 2 7 7 C 1.53004 * 109.47232 * 185.00186 * 4 3 2 8 8 O 1.42901 * 109.47268 * 175.00300 * 7 4 3 9 9 C 1.35674 * 116.99884 * 179.97438 * 8 7 4 10 10 C 1.39309 * 119.81993 * 359.72590 * 9 8 7 11 11 C 1.36433 * 120.18465 * 179.76331 * 10 9 8 12 12 C 1.40837 * 119.81162 * 0.50707 * 11 10 9 13 13 C 1.41219 * 120.17696 * 179.72243 * 12 11 10 14 14 H 1.07995 * 119.99937 * 24.56970 * 13 12 11 15 15 C 1.39895 * 119.99700 * 204.56367 * 13 12 11 16 16 N 1.30881 * 119.99752 * 17.94511 * 15 13 12 17 17 Si 1.86801 * 119.99937 * 197.94477 * 15 13 12 18 18 H 1.48503 * 109.47032 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46818 * 119.99829 * 17 15 13 20 20 H 1.48494 * 109.47088 * 240.00148 * 17 15 13 21 21 C 1.40830 * 119.64045 * 359.74395 * 12 11 10 22 22 C 1.36436 * 119.81397 * 0.02562 * 21 12 11 23 23 H 1.09008 * 109.47401 * 60.00014 * 1 2 3 24 24 H 1.08996 * 109.47462 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47343 * 300.00057 * 1 2 3 26 26 H 1.09003 * 109.46668 * 240.00270 * 2 1 3 27 27 H 1.08997 * 109.46906 * 119.99989 * 2 1 3 28 28 H 1.09005 * 109.47487 * 60.00149 * 3 2 1 29 29 H 1.09006 * 109.47460 * 299.99980 * 3 2 1 30 30 H 1.09005 * 109.47610 * 180.02562 * 6 4 3 31 31 H 1.09007 * 109.46691 * 300.00165 * 6 4 3 32 32 H 1.08999 * 109.47764 * 59.99324 * 6 4 3 33 33 H 1.08996 * 109.47055 * 54.99909 * 7 4 3 34 34 H 1.09000 * 109.46921 * 295.00192 * 7 4 3 35 35 H 1.07998 * 119.90559 * 0.02562 * 10 9 8 36 36 H 1.08003 * 120.09608 * 180.25279 * 11 10 9 37 37 H 0.97000 * 119.99608 * 179.97438 * 16 15 13 38 38 H 1.08000 * 120.09060 * 179.97438 * 21 12 11 39 39 H 1.07995 * 119.91028 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9337 0.8529 0.8409 6 6 4.0794 0.8331 -1.3083 7 6 4.0800 2.8794 0.1251 8 8 5.5043 2.8709 0.2416 9 6 6.1196 4.0741 0.3618 10 6 5.3617 5.2429 0.3615 11 6 5.9724 6.4565 0.4867 12 6 7.3740 6.5261 0.6059 13 6 8.0146 7.7785 0.7301 14 1 7.4729 8.6253 1.1248 15 6 9.3509 7.9221 0.3420 16 7 9.9029 7.0336 -0.4446 17 14 10.3473 9.3820 0.9464 18 1 9.4983 10.2343 1.8172 19 1 11.5180 8.8960 1.7201 20 1 10.8178 10.1759 -0.2170 21 6 8.1332 5.3400 0.6001 22 6 7.5066 4.1341 0.4787 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 5.1695 0.8327 -1.3086 31 1 3.7160 -0.1907 -1.3979 32 1 3.7157 1.4226 -2.1499 33 1 3.6458 3.3429 1.0109 34 1 3.7913 3.4462 -0.7600 35 1 4.2874 5.1880 0.2660 36 1 5.3830 7.3616 0.4904 37 1 10.8294 7.1334 -0.7140 38 1 9.2085 5.3849 0.6906 39 1 8.0873 3.2236 0.4736 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051320486.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:14 Heat of formation + Delta-G solvation = -65.583761 kcal Electronic energy + Delta-G solvation = -17381.152570 eV Core-core repulsion = 14673.024547 eV Total energy + Delta-G solvation = -2708.128023 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.60295 -38.62325 -37.23080 -35.19109 -33.20128 -31.63040 -30.87298 -27.92293 -27.40523 -26.36765 -23.35322 -22.60662 -22.00268 -20.90383 -19.22626 -18.61469 -17.06044 -16.91699 -16.30303 -16.02730 -15.74042 -15.09670 -14.82911 -14.58797 -14.30915 -14.05139 -13.87744 -13.51009 -13.33173 -13.06110 -12.81637 -12.73969 -12.57555 -12.39561 -12.28223 -12.01770 -11.72724 -11.58662 -11.54012 -11.41464 -11.29373 -11.11993 -10.86868 -9.56781 -8.92284 -8.59758 -6.22909 0.94396 1.02007 1.39921 1.51026 1.55404 2.23079 2.61525 2.72685 3.69416 3.85772 3.89068 4.03203 4.25179 4.28158 4.31366 4.39893 4.45341 4.60242 4.66126 4.78283 4.85499 4.90853 4.94170 5.02686 5.06137 5.13521 5.19374 5.22036 5.27408 5.30126 5.37809 5.50828 5.53127 5.59524 5.65406 5.89395 6.05416 6.26295 6.56978 6.81444 6.94825 7.10573 8.37080 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.066095 B = 0.003621 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.531984 B = 7731.011681 C = 8004.973075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.108 4.108 4 C -0.084 4.084 5 H 0.074 0.926 6 C -0.143 4.143 7 C 0.063 3.937 8 O -0.335 6.335 9 C 0.001 3.999 10 C -0.167 4.167 11 C -0.209 4.209 12 C 0.055 3.945 13 C -0.499 4.499 14 H 0.076 0.924 15 C 0.033 3.967 16 N -0.832 5.832 17 Si 0.983 3.017 18 H -0.258 1.258 19 H -0.265 1.265 20 H -0.266 1.266 21 C -0.152 4.152 22 C -0.134 4.134 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.125 0.875 36 H 0.105 0.895 37 H 0.287 0.713 38 H 0.111 0.889 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.981 -9.705 0.187 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.145 4.145 4 C -0.102 4.102 5 H 0.093 0.907 6 C -0.200 4.200 7 C -0.012 4.012 8 O -0.251 6.251 9 C -0.043 4.043 10 C -0.186 4.186 11 C -0.228 4.228 12 C 0.052 3.948 13 C -0.529 4.529 14 H 0.094 0.906 15 C -0.181 4.181 16 N -0.458 5.458 17 Si 0.804 3.196 18 H -0.182 1.182 19 H -0.189 1.189 20 H -0.191 1.191 21 C -0.172 4.172 22 C -0.153 4.153 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.143 0.857 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.129 0.871 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.699 -9.948 0.048 15.357 hybrid contribution 0.579 0.903 0.073 1.075 sum -11.120 -9.045 0.121 14.335 Atomic orbital electron populations 1.21773 0.95133 1.02067 1.01947 1.21545 0.96325 0.95678 1.02467 1.21564 0.92060 0.98294 1.02630 1.21146 0.96348 0.93132 0.99599 0.90749 1.21811 1.00600 1.01349 0.96264 1.22871 0.78948 0.99007 1.00402 1.85812 1.21803 1.27509 1.89965 1.18704 0.91816 0.84102 1.09721 1.20701 0.98912 0.92274 1.06675 1.20803 0.94712 0.96483 1.10824 1.17954 0.91971 0.93905 0.90923 1.19730 0.97147 0.96433 1.39585 0.90630 1.26753 0.98650 1.00532 0.92166 1.69898 1.14745 1.36138 1.25066 0.85148 0.77940 0.77491 0.79029 1.18194 1.18943 1.19124 1.20908 0.99583 0.91253 1.05448 1.20015 0.91738 0.97688 1.05829 0.92587 0.92047 0.92728 0.91324 0.91933 0.91538 0.91368 0.94047 0.90594 0.92761 0.92816 0.93095 0.85735 0.87700 0.90201 0.87138 0.87308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 71.98 0.71 -1.27 16 2 C -0.12 -1.87 5.69 30.59 0.17 -1.69 16 3 C -0.11 -1.98 4.68 30.59 0.14 -1.83 16 4 C -0.08 -2.00 2.63 -10.79 -0.03 -2.03 16 5 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 6 C -0.14 -3.33 8.84 71.98 0.64 -2.70 16 7 C 0.06 1.96 4.11 71.98 0.30 2.25 16 8 O -0.33 -13.63 9.66 -89.91 -0.87 -14.50 16 9 C 0.00 0.02 6.71 22.79 0.15 0.18 16 10 C -0.17 -7.62 8.96 22.11 0.20 -7.42 16 11 C -0.21 -10.52 9.74 22.48 0.22 -10.30 16 12 C 0.05 3.04 5.57 -21.28 -0.12 2.92 16 13 C -0.50 -27.48 9.04 23.40 0.21 -27.27 16 14 H 0.08 4.01 7.91 -2.91 -0.02 3.98 16 15 C 0.03 1.68 5.13 85.24 0.44 2.12 16 16 N -0.83 -44.45 10.96 21.82 0.24 -44.21 16 17 Si 0.98 38.83 29.60 68.60 2.03 40.86 16 18 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 19 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 20 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 21 C -0.15 -8.35 8.64 22.48 0.19 -8.16 16 22 C -0.13 -6.72 9.92 22.11 0.22 -6.50 16 23 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.07 1.00 6.56 -2.39 -0.02 0.98 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.04 1.15 7.82 -2.38 -0.02 1.13 16 31 H 0.08 1.41 6.56 -2.38 -0.02 1.39 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.61 7.66 -2.39 -0.02 1.59 16 34 H 0.05 1.57 7.63 -2.39 -0.02 1.55 16 35 H 0.12 4.80 6.27 -2.91 -0.02 4.78 16 36 H 0.10 4.92 8.06 -2.91 -0.02 4.90 16 37 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 38 H 0.11 6.25 6.16 -2.91 -0.02 6.23 16 39 H 0.11 5.03 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -60.41 317.26 5.85 -54.56 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 1.00 Total: 24.99 kcal Atomic # 6 Polarization: -65.16 SS G_CDS: 3.45 Total: -61.71 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.24 Total: -44.21 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.87 Total: -14.50 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -60.41 5.85 -54.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051320486.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.023 kcal (2) G-P(sol) polarization free energy of solvation -60.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds