Wall clock time and date at job start Mon Mar 30 2020 06:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47020 * 2 1 4 4 H 1.09001 * 109.47000 * 304.99210 * 3 2 1 5 5 C 1.50706 * 109.46859 * 185.00129 * 3 2 1 6 6 H 1.08000 * 119.99302 * 239.99789 * 5 3 2 7 7 C 1.37871 * 120.00436 * 59.72322 * 5 3 2 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47050 * 59.99579 * 9 7 5 11 11 H 1.48496 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46492 * 299.99554 * 9 7 5 13 13 C 1.50696 * 109.47505 * 64.99888 * 3 2 1 14 14 C 1.38268 * 119.94307 * 59.72628 * 13 3 2 15 15 C 1.38145 * 120.05108 * 179.72892 * 14 13 3 16 16 C 1.50707 * 120.02208 * 180.27144 * 15 14 13 17 17 C 1.38727 * 119.94911 * 0.54201 * 15 14 13 18 18 O 1.35895 * 120.06032 * 179.74700 * 17 15 14 19 19 C 1.42897 * 117.00536 * 269.98482 * 18 17 15 20 20 C 1.38737 * 119.88515 * 359.73413 * 17 15 14 21 21 C 1.50701 * 120.02561 * 180.02562 * 20 17 15 22 22 C 1.38146 * 119.94653 * 359.97438 * 20 17 15 23 23 H 1.08995 * 109.47136 * 300.00531 * 1 2 3 24 24 H 1.09001 * 109.47218 * 60.00434 * 1 2 3 25 25 H 1.09002 * 109.47082 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47136 * 239.99469 * 2 1 3 27 27 H 1.08998 * 109.46713 * 119.99549 * 2 1 3 28 28 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 29 29 H 1.07998 * 119.97304 * 0.02562 * 14 13 3 30 30 H 1.09001 * 109.47036 * 270.26618 * 16 15 14 31 31 H 1.08990 * 109.47255 * 30.27480 * 16 15 14 32 32 H 1.09002 * 109.46605 * 150.27752 * 16 15 14 33 33 H 1.08997 * 109.47217 * 59.99104 * 19 18 17 34 34 H 1.08997 * 109.47354 * 179.97438 * 19 18 17 35 35 H 1.09003 * 109.46854 * 299.99972 * 19 18 17 36 36 H 1.09006 * 109.46652 * 269.97277 * 21 20 17 37 37 H 1.08999 * 109.47666 * 29.96741 * 21 20 17 38 38 H 1.08995 * 109.47253 * 149.97952 * 21 20 17 39 39 H 1.07993 * 119.97660 * 179.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1436 0.8733 -1.2252 8 7 3.4067 0.3267 -2.1675 9 14 6.0053 0.8749 -1.3784 10 1 6.5972 0.1459 -0.2280 11 1 6.3984 0.2046 -2.6438 12 1 6.5001 2.2750 -1.3849 13 6 1.6413 2.1163 1.2876 14 6 2.0728 1.6038 2.4971 15 6 1.7134 2.2230 3.6786 16 6 2.1891 1.6673 4.9962 17 6 0.9095 3.3533 3.6514 18 8 0.5502 3.9611 4.8125 19 6 -0.6584 3.5157 5.4312 20 6 0.4731 3.8622 2.4368 21 6 -0.3998 5.0902 2.4036 22 6 0.8403 3.2429 1.2577 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8299 -0.0754 -2.9422 29 1 2.6954 0.7215 2.5180 30 1 1.4668 0.9394 5.3656 31 1 3.1555 1.1826 4.8584 32 1 2.2889 2.4783 5.7176 33 1 -0.5753 2.4553 5.6693 34 1 -0.8274 4.0813 6.3475 35 1 -1.4942 3.6704 4.7489 36 1 -1.4475 4.7924 2.4471 37 1 -0.1667 5.7250 3.2585 38 1 -0.2168 5.6412 1.4811 39 1 0.5005 3.6384 0.3120 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084397612.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:29 Heat of formation + Delta-G solvation = -41.255054 kcal Electronic energy + Delta-G solvation = -18482.826012 eV Core-core repulsion = 15775.752960 eV Total energy + Delta-G solvation = -2707.073052 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.77885 -37.30658 -34.66354 -33.10985 -31.78197 -30.14397 -27.75925 -27.23905 -26.15869 -25.41180 -23.20091 -21.28772 -20.42141 -18.86060 -17.17421 -16.47083 -15.73920 -15.35071 -14.85127 -13.95086 -13.64832 -13.48143 -13.34075 -12.93179 -12.88884 -12.82063 -12.35768 -12.26980 -11.98728 -11.71569 -11.47684 -11.25067 -11.09308 -10.90539 -10.77496 -10.72179 -10.49593 -9.91874 -9.70291 -9.53082 -9.31723 -8.98336 -8.34979 -7.97288 -7.56082 -6.01484 -4.08539 1.88073 1.97544 3.31468 3.35885 3.39345 3.96412 4.39651 4.52296 5.22067 5.27101 5.32650 5.39115 5.42530 5.56372 5.61802 5.75117 5.84577 5.88428 6.00160 6.08885 6.10951 6.21359 6.26567 6.29193 6.38139 6.46197 6.54390 6.70814 6.94082 7.05936 7.08277 7.17575 7.29405 7.41757 7.47405 7.74060 7.96427 8.00866 8.10945 8.39777 8.94038 9.55863 11.03280 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.025829 B = 0.006444 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.802466 B = 4344.093820 C = 4587.488588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C 0.078 3.922 4 H 0.035 0.965 5 C -0.508 4.508 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C -0.020 4.020 14 C -0.105 4.105 15 C -0.105 4.105 16 C -0.106 4.106 17 C 0.056 3.944 18 O -0.335 6.335 19 C 0.036 3.964 20 C -0.104 4.104 21 C -0.106 4.106 22 C -0.125 4.125 23 H 0.036 0.964 24 H 0.043 0.957 25 H 0.032 0.968 26 H 0.097 0.903 27 H 0.034 0.966 28 H 0.261 0.739 29 H 0.125 0.875 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.351 3.561 10.554 13.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C 0.059 3.941 4 H 0.053 0.947 5 C -0.546 4.546 6 H 0.075 0.925 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.020 4.020 14 C -0.123 4.123 15 C -0.106 4.106 16 C -0.163 4.163 17 C 0.013 3.987 18 O -0.252 6.252 19 C -0.059 4.059 20 C -0.105 4.105 21 C -0.162 4.162 22 C -0.143 4.143 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.115 0.885 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.143 0.857 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.241 3.609 10.472 13.233 hybrid contribution 0.852 -0.199 -0.245 0.908 sum -6.389 3.410 10.228 12.532 Atomic orbital electron populations 1.21843 0.99343 0.99137 1.00057 1.21611 0.91560 0.99398 1.02544 1.17928 0.95831 0.91962 0.88334 0.94709 1.21095 0.90518 1.37444 1.05537 0.92499 1.24942 0.98043 0.95183 0.95660 1.69861 1.34903 1.38277 1.09727 0.86655 0.85773 0.78304 0.77303 1.20252 1.21282 1.20255 1.20655 0.91221 0.93030 0.97139 1.20859 1.00467 1.00294 0.90698 1.20099 0.99583 0.94867 0.96007 1.20626 1.00796 1.00470 0.94394 1.18105 1.01129 0.94961 0.84528 1.85958 1.41358 1.61282 1.36566 1.22879 0.86365 0.99472 0.97165 1.20028 0.99751 0.97937 0.92737 1.20620 0.97931 0.95218 1.02462 1.20909 1.00041 0.96809 0.96581 0.94537 0.93760 0.94864 0.88495 0.94748 0.92875 0.85733 0.92185 0.91673 0.91600 0.94045 0.89678 0.94073 0.92200 0.91556 0.91797 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.73 37.16 0.36 -2.55 16 2 C -0.11 -2.62 5.13 -26.73 -0.14 -2.76 16 3 C 0.08 1.90 1.96 -92.92 -0.18 1.71 16 4 H 0.03 0.92 7.87 -51.93 -0.41 0.51 16 5 C -0.51 -13.65 8.25 -34.44 -0.28 -13.93 16 6 H 0.06 1.54 7.61 -52.49 -0.40 1.14 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.75 11.27 55.43 0.62 -24.13 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C -0.02 -0.44 3.72 -104.60 -0.39 -0.83 16 14 C -0.11 -2.13 8.31 -39.60 -0.33 -2.45 16 15 C -0.11 -1.90 5.89 -104.47 -0.62 -2.51 16 16 C -0.11 -1.56 9.79 36.01 0.35 -1.21 16 17 C 0.06 0.98 5.67 -39.22 -0.22 0.76 16 18 O -0.33 -5.27 8.51 -19.41 -0.17 -5.43 16 19 C 0.04 0.42 11.13 101.05 1.12 1.55 16 20 C -0.10 -1.84 5.89 -104.47 -0.62 -2.46 16 21 C -0.11 -1.49 9.79 36.01 0.35 -1.14 16 22 C -0.13 -2.45 9.32 -39.60 -0.37 -2.82 16 23 H 0.04 0.69 7.38 -51.93 -0.38 0.31 16 24 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.10 2.51 5.93 -51.93 -0.31 2.20 16 27 H 0.03 0.78 7.20 -51.93 -0.37 0.40 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 29 H 0.12 2.54 7.53 -52.49 -0.40 2.15 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.91 8.09 -51.93 -0.42 0.49 16 32 H 0.07 0.92 7.53 -51.93 -0.39 0.53 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.90 7.53 -51.93 -0.39 0.51 16 38 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 39 H 0.12 2.20 7.94 -52.49 -0.42 1.78 16 LS Contribution 318.51 15.07 4.80 4.80 Total: -1.00 -28.21 318.51 -7.21 -35.42 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.40 Total: 0.29 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: -1.05 Total: -27.02 kcal Atomic # 7 Polarization: -24.75 SS G_CDS: 0.62 Total: -24.13 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.17 Total: -5.43 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.21 -7.21 -35.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084397612.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.836 kcal (2) G-P(sol) polarization free energy of solvation -28.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds