Wall clock time and date at job start Mon Mar 30 2020 06:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47020 * 2 1 4 4 H 1.09001 * 109.47000 * 304.99210 * 3 2 1 5 5 C 1.50706 * 109.46859 * 185.00129 * 3 2 1 6 6 H 1.08000 * 119.99302 * 239.99789 * 5 3 2 7 7 C 1.37871 * 120.00436 * 59.72322 * 5 3 2 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47050 * 59.99579 * 9 7 5 11 11 H 1.48496 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46492 * 299.99554 * 9 7 5 13 13 C 1.50696 * 109.47505 * 64.99888 * 3 2 1 14 14 C 1.38268 * 119.94307 * 59.72628 * 13 3 2 15 15 C 1.38145 * 120.05108 * 179.72892 * 14 13 3 16 16 C 1.50707 * 120.02208 * 180.27144 * 15 14 13 17 17 C 1.38727 * 119.94911 * 0.54201 * 15 14 13 18 18 O 1.35895 * 120.06032 * 179.74700 * 17 15 14 19 19 C 1.42897 * 117.00536 * 269.98482 * 18 17 15 20 20 C 1.38737 * 119.88515 * 359.73413 * 17 15 14 21 21 C 1.50701 * 120.02561 * 180.02562 * 20 17 15 22 22 C 1.38146 * 119.94653 * 359.97438 * 20 17 15 23 23 H 1.08995 * 109.47136 * 300.00531 * 1 2 3 24 24 H 1.09001 * 109.47218 * 60.00434 * 1 2 3 25 25 H 1.09002 * 109.47082 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47136 * 239.99469 * 2 1 3 27 27 H 1.08998 * 109.46713 * 119.99549 * 2 1 3 28 28 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 29 29 H 1.07998 * 119.97304 * 0.02562 * 14 13 3 30 30 H 1.09001 * 109.47036 * 270.26618 * 16 15 14 31 31 H 1.08990 * 109.47255 * 30.27480 * 16 15 14 32 32 H 1.09002 * 109.46605 * 150.27752 * 16 15 14 33 33 H 1.08997 * 109.47217 * 59.99104 * 19 18 17 34 34 H 1.08997 * 109.47354 * 179.97438 * 19 18 17 35 35 H 1.09003 * 109.46854 * 299.99972 * 19 18 17 36 36 H 1.09006 * 109.46652 * 269.97277 * 21 20 17 37 37 H 1.08999 * 109.47666 * 29.96741 * 21 20 17 38 38 H 1.08995 * 109.47253 * 149.97952 * 21 20 17 39 39 H 1.07993 * 119.97660 * 179.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1436 0.8733 -1.2252 8 7 3.4067 0.3267 -2.1675 9 14 6.0053 0.8749 -1.3784 10 1 6.5972 0.1459 -0.2280 11 1 6.3984 0.2046 -2.6438 12 1 6.5001 2.2750 -1.3849 13 6 1.6413 2.1163 1.2876 14 6 2.0728 1.6038 2.4971 15 6 1.7134 2.2230 3.6786 16 6 2.1891 1.6673 4.9962 17 6 0.9095 3.3533 3.6514 18 8 0.5502 3.9611 4.8125 19 6 -0.6584 3.5157 5.4312 20 6 0.4731 3.8622 2.4368 21 6 -0.3998 5.0902 2.4036 22 6 0.8403 3.2429 1.2577 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8299 -0.0754 -2.9422 29 1 2.6954 0.7215 2.5180 30 1 1.4668 0.9394 5.3656 31 1 3.1555 1.1826 4.8584 32 1 2.2889 2.4783 5.7176 33 1 -0.5753 2.4553 5.6693 34 1 -0.8274 4.0813 6.3475 35 1 -1.4942 3.6704 4.7489 36 1 -1.4475 4.7924 2.4471 37 1 -0.1667 5.7250 3.2585 38 1 -0.2168 5.6412 1.4811 39 1 0.5005 3.6384 0.3120 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084397612.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:28 Heat of formation + Delta-G solvation = -54.661824 kcal Electronic energy + Delta-G solvation = -18483.407373 eV Core-core repulsion = 15775.752960 eV Total energy + Delta-G solvation = -2707.654413 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.15264 -38.72924 -36.36690 -34.42679 -33.73219 -31.65575 -29.06308 -28.75431 -27.51919 -26.73685 -25.05065 -22.90044 -21.79352 -20.55804 -18.52105 -18.34808 -17.21177 -16.76953 -16.47020 -15.63291 -14.92509 -14.85351 -14.80688 -14.48314 -14.22499 -14.02772 -13.80143 -13.74211 -13.37571 -13.17435 -13.05170 -12.78471 -12.66281 -12.54676 -12.30399 -12.18368 -12.16380 -11.73113 -11.52548 -11.09902 -10.91621 -10.74422 -10.40868 -9.39885 -9.07058 -8.08060 -6.22209 0.44820 0.51760 1.41632 1.41976 1.49959 2.42100 2.66505 3.11080 3.19078 3.95218 3.98781 4.18917 4.46105 4.52070 4.53567 4.56439 4.57497 4.62850 4.73310 4.74905 4.78156 4.78894 4.80154 4.87883 4.95305 5.00694 5.15594 5.24473 5.29277 5.42492 5.50669 5.60912 5.64752 5.66906 5.76158 5.95475 6.13081 6.14594 6.40886 6.72836 6.85917 7.44914 8.94834 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.025829 B = 0.006444 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.802466 B = 4344.093820 C = 4587.488588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 C 0.081 3.919 4 H 0.003 0.997 5 C -0.524 4.524 6 H 0.047 0.953 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.949 3.051 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.275 1.275 13 C -0.044 4.044 14 C -0.119 4.119 15 C -0.108 4.108 16 C -0.102 4.102 17 C 0.061 3.939 18 O -0.343 6.343 19 C 0.029 3.971 20 C -0.105 4.105 21 C -0.102 4.102 22 C -0.138 4.138 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.032 0.968 28 H 0.262 0.738 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.115 0.885 35 H 0.047 0.953 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.103 4.288 12.588 15.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.145 4.145 3 C 0.063 3.937 4 H 0.021 0.979 5 C -0.562 4.562 6 H 0.065 0.935 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.775 3.225 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.201 1.201 13 C -0.044 4.044 14 C -0.137 4.137 15 C -0.108 4.108 16 C -0.159 4.159 17 C 0.018 3.982 18 O -0.260 6.260 19 C -0.065 4.065 20 C -0.105 4.105 21 C -0.158 4.158 22 C -0.156 4.156 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.131 0.869 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.134 0.866 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.002 4.338 12.518 15.478 hybrid contribution 1.020 -0.368 -0.777 1.334 sum -6.982 3.971 11.741 14.226 Atomic orbital electron populations 1.21693 0.96686 1.00523 1.00248 1.21444 0.93936 0.98352 1.00809 1.17744 0.94390 0.92545 0.89013 0.97851 1.21374 0.92140 1.37298 1.05374 0.93500 1.25644 1.02060 0.94945 0.95436 1.69987 1.36366 1.38816 1.10051 0.85744 0.80999 0.78255 0.77476 1.19666 1.20686 1.20095 1.20409 0.93387 0.94386 0.96189 1.20771 1.01162 1.00553 0.91252 1.20398 0.99040 0.94857 0.96555 1.20663 1.01363 1.01138 0.92729 1.18216 1.00326 0.94285 0.85417 1.85926 1.43190 1.61272 1.35597 1.23163 0.84761 1.00413 0.98143 1.20362 0.99502 0.98690 0.91978 1.20666 0.98260 0.93697 1.03212 1.20948 1.00349 0.96663 0.97610 0.93683 0.94134 0.92809 0.91507 0.94949 0.92903 0.86928 0.90234 0.91448 0.90637 0.93559 0.86649 0.93431 0.90196 0.90725 0.91129 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 9.73 71.98 0.70 -4.64 16 2 C -0.11 -5.14 5.13 30.59 0.16 -4.98 16 3 C 0.08 4.13 1.96 -12.29 -0.02 4.11 16 4 H 0.00 0.19 7.87 -2.39 -0.02 0.17 16 5 C -0.52 -29.13 8.25 25.60 0.21 -28.92 16 6 H 0.05 2.63 7.61 -2.91 -0.02 2.61 16 7 C 0.02 1.00 5.29 84.65 0.45 1.45 16 8 N -0.91 -52.33 11.27 21.45 0.24 -52.09 16 9 Si 0.95 43.95 29.54 68.60 2.03 45.97 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 C -0.04 -1.92 3.72 -19.85 -0.07 -2.00 16 14 C -0.12 -4.86 8.31 22.25 0.18 -4.68 16 15 C -0.11 -3.76 5.89 -19.77 -0.12 -3.88 16 16 C -0.10 -2.78 9.79 71.24 0.70 -2.08 16 17 C 0.06 2.03 5.67 22.51 0.13 2.15 16 18 O -0.34 -9.69 8.51 -92.37 -0.79 -10.47 16 19 C 0.03 0.57 11.13 113.37 1.26 1.84 16 20 C -0.10 -3.55 5.89 -19.77 -0.12 -3.66 16 21 C -0.10 -2.61 9.79 71.24 0.70 -1.91 16 22 C -0.14 -5.41 9.32 22.25 0.21 -5.20 16 23 H 0.04 1.69 7.38 -2.39 -0.02 1.68 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.07 3.60 5.93 -2.39 -0.01 3.58 16 27 H 0.03 1.51 7.20 -2.39 -0.02 1.49 16 28 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 29 H 0.11 4.74 7.53 -2.91 -0.02 4.72 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 1.79 8.09 -2.39 -0.02 1.77 16 32 H 0.07 1.90 7.53 -2.39 -0.02 1.88 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.07 1.80 7.53 -2.39 -0.02 1.78 16 38 H 0.07 1.71 8.09 -2.39 -0.02 1.70 16 39 H 0.12 4.48 7.94 -2.91 -0.02 4.46 16 Total: -1.00 -61.54 318.51 6.85 -54.69 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 1.00 Total: 14.30 kcal Atomic # 6 Polarization: -56.77 SS G_CDS: 4.36 Total: -52.40 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.24 Total: -52.09 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.79 Total: -10.47 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -61.54 6.85 -54.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084397612.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.029 kcal (2) G-P(sol) polarization free energy of solvation -61.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds