Wall clock time and date at job start Mon Mar 30 2020 06:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38234 * 119.61985 * 2 1 4 4 C 1.38625 * 119.16103 * 179.97438 * 3 2 1 5 5 C 1.38681 * 118.42014 * 0.24960 * 4 3 2 6 6 C 1.38177 * 119.16313 * 359.47692 * 5 4 3 7 7 C 1.50694 * 119.61589 * 180.24979 * 6 5 4 8 8 N 1.46896 * 109.46944 * 95.28424 * 7 6 5 9 9 C 1.46902 * 111.00191 * 169.99606 * 8 7 6 10 10 C 1.50696 * 109.47260 * 284.08405 * 9 8 7 11 11 H 1.07999 * 120.00346 * 4.62361 * 10 9 8 12 12 C 1.37875 * 119.99876 * 184.62432 * 10 9 8 13 13 N 1.31515 * 120.00096 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00045 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47022 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47320 * 120.00220 * 14 12 10 17 17 H 1.48505 * 109.46798 * 239.99882 * 14 12 10 18 18 C 1.46902 * 111.00160 * 293.95476 * 8 7 6 19 19 C 1.53003 * 109.47275 * 169.53306 * 18 8 7 20 20 C 1.53008 * 109.46611 * 289.52677 * 18 8 7 21 21 N 1.31854 * 119.62052 * 179.97438 * 2 1 3 22 22 H 1.09004 * 109.46933 * 90.00270 * 1 2 3 23 23 H 1.08992 * 109.47045 * 210.00446 * 1 2 3 24 24 H 1.08996 * 109.46947 * 330.00753 * 1 2 3 25 25 H 1.07997 * 120.42049 * 359.97105 * 3 2 1 26 26 H 1.07998 * 120.78784 * 179.97438 * 4 3 2 27 27 H 1.07998 * 120.41595 * 179.75329 * 5 4 3 28 28 H 1.09003 * 109.46947 * 215.28324 * 7 6 5 29 29 H 1.08997 * 109.47773 * 335.28454 * 7 6 5 30 30 H 1.09000 * 109.47128 * 44.08837 * 9 8 7 31 31 H 1.09002 * 109.47190 * 164.08074 * 9 8 7 32 32 H 0.97003 * 120.00298 * 180.02562 * 13 12 10 33 33 H 1.08994 * 109.46806 * 49.52445 * 18 8 7 34 34 H 1.08994 * 109.47236 * 60.99662 * 19 18 8 35 35 H 1.08996 * 109.46643 * 181.00475 * 19 18 8 36 36 H 1.08993 * 109.46560 * 300.99817 * 19 18 8 37 37 H 1.08997 * 109.46787 * 60.00255 * 20 18 8 38 38 H 1.08995 * 109.46616 * 179.97438 * 20 18 8 39 39 H 1.08996 * 109.47581 * 299.99923 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5764 1.1906 0.0005 5 6 4.2266 -0.0343 -0.0042 6 6 3.4766 -1.1948 0.0017 7 6 4.1727 -2.5314 0.0022 8 7 4.2912 -3.0211 1.3821 9 6 4.7463 -4.4175 1.4079 10 6 3.6038 -5.3253 1.0319 11 1 2.6578 -4.9041 0.7250 12 6 3.7660 -6.6937 1.0797 13 7 4.9180 -7.2066 1.4530 14 14 2.3499 -7.8190 0.6130 15 1 1.1715 -6.9997 0.2319 16 1 2.7525 -8.6717 -0.5342 17 1 1.9998 -8.6803 1.7710 18 6 5.1841 -2.1616 2.1709 19 6 5.0812 -2.5403 3.6498 20 6 6.6259 -2.3513 1.6951 21 7 2.1587 -1.1462 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5137 25 1 1.6509 2.1374 -0.0005 26 1 4.1366 2.1139 0.0001 27 1 5.3056 -0.0805 -0.0080 28 1 3.5941 -3.2426 -0.5873 29 1 5.1668 -2.4236 -0.4316 30 1 5.5624 -4.5469 0.6969 31 1 5.0946 -4.6677 2.4100 32 1 5.0323 -8.1693 1.4863 33 1 4.8928 -1.1193 2.0414 34 1 5.3894 -3.5774 3.7816 35 1 5.7302 -1.8907 4.2370 36 1 4.0505 -2.4222 3.9840 37 1 6.6992 -2.0816 0.6415 38 1 7.2883 -1.7133 2.2800 39 1 6.9171 -3.3936 1.8244 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091873944.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:06 Heat of formation + Delta-G solvation = 10.521635 kcal Electronic energy + Delta-G solvation = -18375.347230 eV Core-core repulsion = 15702.812135 eV Total energy + Delta-G solvation = -2672.535095 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.29737 -39.18179 -34.90900 -34.22686 -33.57036 -32.17901 -29.77265 -28.16594 -28.00383 -26.48277 -24.28766 -23.26054 -22.58265 -20.18965 -18.65840 -17.27171 -17.19022 -16.83377 -16.52208 -15.97912 -15.76204 -15.16010 -14.92871 -14.56627 -14.13463 -14.02018 -13.80123 -13.45210 -13.26895 -13.04271 -12.96996 -12.91162 -12.71054 -12.61301 -12.32232 -12.20402 -12.14325 -12.04101 -11.33000 -11.26962 -10.67164 -10.56260 -10.17865 -9.68139 -8.89976 -8.17507 -6.25791 0.21850 0.48165 1.38047 1.38792 1.53379 2.41222 2.81328 3.13454 3.33100 3.47341 3.87361 3.97508 4.04557 4.21204 4.27925 4.29617 4.44782 4.50130 4.61994 4.73498 4.77086 4.79192 4.82881 4.88114 4.91709 4.99449 5.04029 5.15433 5.24315 5.29539 5.31458 5.36680 5.41468 5.45410 5.70391 5.90959 6.13559 6.42148 6.71457 6.90203 7.28204 7.42862 8.92369 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019846 B = 0.007021 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.550937 B = 3987.006298 C = 4972.361643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.104 3.896 3 C -0.175 4.175 4 C -0.068 4.068 5 C -0.181 4.181 6 C 0.133 3.867 7 C 0.112 3.888 8 N -0.531 5.531 9 C 0.213 3.787 10 C -0.518 4.518 11 H 0.050 0.950 12 C 0.005 3.995 13 N -0.933 5.933 14 Si 0.961 3.039 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.276 1.276 18 C 0.069 3.931 19 C -0.134 4.134 20 C -0.175 4.175 21 N -0.511 5.511 22 H 0.085 0.915 23 H 0.057 0.943 24 H 0.102 0.898 25 H 0.168 0.832 26 H 0.171 0.829 27 H 0.144 0.856 28 H 0.059 0.941 29 H 0.049 0.951 30 H -0.033 1.033 31 H 0.019 0.981 32 H 0.264 0.736 33 H 0.084 0.916 34 H 0.036 0.964 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.097 19.239 -1.940 19.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.034 4.034 3 C -0.195 4.195 4 C -0.093 4.093 5 C -0.201 4.201 6 C -0.005 4.005 7 C -0.016 4.016 8 N -0.256 5.256 9 C 0.087 3.913 10 C -0.557 4.557 11 H 0.069 0.931 12 C -0.193 4.193 13 N -0.574 5.574 14 Si 0.786 3.214 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.202 1.202 18 C -0.039 4.039 19 C -0.192 4.192 20 C -0.234 4.234 21 N -0.222 5.222 22 H 0.104 0.896 23 H 0.076 0.924 24 H 0.120 0.880 25 H 0.185 0.815 26 H 0.188 0.812 27 H 0.162 0.838 28 H 0.077 0.923 29 H 0.066 0.934 30 H -0.015 1.015 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.954 18.299 -1.694 18.614 hybrid contribution 0.827 -0.676 -0.559 1.205 sum -2.127 17.624 -2.253 17.894 Atomic orbital electron populations 1.20766 0.87523 1.03811 1.03633 1.21908 0.98365 0.88483 0.94648 1.22290 0.95324 0.99475 1.02396 1.21950 0.94695 0.98442 0.94236 1.22122 1.01839 0.92884 1.03259 1.21097 0.89510 0.95146 0.94712 1.20744 0.97322 0.92228 0.91338 1.62170 1.49789 1.03084 1.10527 1.19364 0.93205 0.83696 0.95015 1.21533 0.98985 0.91337 1.43836 0.93132 1.25785 0.98396 0.99631 0.95482 1.70069 1.25398 1.12393 1.49513 0.85454 0.79384 0.78483 0.78035 1.19566 1.20160 1.20187 1.21823 0.90633 0.97264 0.94191 1.21767 1.01445 1.00908 0.95072 1.22376 0.97951 1.01539 1.01535 1.67297 1.10472 1.31319 1.13072 0.89597 0.92390 0.87957 0.81483 0.81155 0.83785 0.92292 0.93356 1.01493 0.96312 0.92761 0.89754 0.94518 0.89999 0.93557 0.92640 0.89968 0.94565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.16 10.17 71.23 0.72 -1.44 16 2 C 0.10 2.94 6.78 42.55 0.29 3.23 16 3 C -0.18 -3.67 9.74 22.36 0.22 -3.45 16 4 C -0.07 -1.38 10.18 22.47 0.23 -1.15 16 5 C -0.18 -4.84 8.13 22.36 0.18 -4.66 16 6 C 0.13 4.77 5.66 42.53 0.24 5.01 16 7 C 0.11 4.70 5.00 85.56 0.43 5.12 16 8 N -0.53 -24.19 4.36 -880.07 -3.84 -28.03 16 9 C 0.21 11.63 3.33 85.56 0.28 11.91 16 10 C -0.52 -31.10 8.62 25.60 0.22 -30.88 16 11 H 0.05 3.12 7.67 -2.91 -0.02 3.10 16 12 C 0.00 0.28 5.46 84.65 0.46 0.74 16 13 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 14 Si 0.96 46.70 29.54 68.60 2.03 48.72 16 15 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 18 C 0.07 2.53 2.74 44.92 0.12 2.65 16 19 C -0.13 -4.80 9.15 71.98 0.66 -4.14 16 20 C -0.18 -5.78 8.53 71.98 0.61 -5.17 16 21 N -0.51 -19.16 10.19 -172.08 -1.75 -20.92 16 22 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.10 1.50 8.08 -2.39 -0.02 1.48 16 25 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 26 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 27 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 28 H 0.06 2.86 7.34 -2.39 -0.02 2.84 16 29 H 0.05 1.87 6.32 -2.39 -0.02 1.85 16 30 H -0.03 -1.89 7.33 -2.39 -0.02 -1.91 16 31 H 0.02 1.10 5.89 -2.39 -0.01 1.09 16 32 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 33 H 0.08 2.78 5.83 -2.39 -0.01 2.77 16 34 H 0.04 1.49 6.30 -2.39 -0.02 1.48 16 35 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.05 1.73 6.59 -2.39 -0.02 1.71 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.04 1.41 6.75 -2.39 -0.02 1.39 16 Total: -1.00 -72.00 313.46 2.41 -69.59 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 1.02 Total: 9.95 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: 4.67 Total: -22.22 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -5.31 Total: -106.04 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Total: -72.00 2.41 -69.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091873944.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.108 kcal (2) G-P(sol) polarization free energy of solvation -71.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds