Wall clock time and date at job start Mon Mar 30 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52988 * 109.47546 * 2 1 4 4 O 1.42906 * 109.47484 * 180.02562 * 3 2 1 5 5 C 1.35897 * 117.00227 * 180.02562 * 4 3 2 6 6 C 1.38733 * 120.05540 * 179.97438 * 5 4 3 7 7 C 1.38147 * 119.94321 * 179.97438 * 6 5 4 8 8 C 1.38264 * 120.05670 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.94557 * 179.97438 * 8 7 6 10 10 H 1.09007 * 109.46722 * 359.97438 * 9 8 7 11 11 C 1.52992 * 109.47613 * 119.99590 * 9 8 7 12 12 C 1.53004 * 109.47084 * 240.00016 * 9 8 7 13 13 C 1.50701 * 109.47211 * 175.00039 * 12 9 8 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 9 15 15 C 1.37871 * 119.99694 * 180.27574 * 13 12 9 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 12 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 12 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 C 1.38269 * 120.11256 * 0.26617 * 8 7 6 22 22 C 1.38146 * 120.05144 * 359.45225 * 21 8 7 23 23 H 1.09000 * 109.47229 * 59.99924 * 1 2 3 24 24 H 1.08994 * 109.47373 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46838 * 300.00157 * 1 2 3 26 26 H 1.09007 * 109.46981 * 239.99196 * 2 1 3 27 27 H 1.09005 * 109.46773 * 119.99990 * 2 1 3 28 28 H 1.09000 * 109.47180 * 60.00053 * 3 2 1 29 29 H 1.09005 * 109.47077 * 299.99804 * 3 2 1 30 30 H 1.08002 * 120.02593 * 359.95673 * 6 5 4 31 31 H 1.08001 * 119.97238 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.46966 * 60.00049 * 11 9 8 33 33 H 1.09003 * 109.47367 * 180.02562 * 11 9 8 34 34 H 1.09004 * 109.47261 * 300.00073 * 11 9 8 35 35 H 1.09000 * 109.47211 * 54.99065 * 12 9 8 36 36 H 1.09007 * 109.46376 * 294.99608 * 12 9 8 37 37 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 38 38 H 1.07994 * 119.97321 * 179.70578 * 21 8 7 39 39 H 1.08002 * 120.02570 * 180.27495 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 8 3.4691 1.4423 -0.0006 5 6 4.0861 2.6532 -0.0001 6 6 5.4715 2.7270 -0.0001 7 6 6.0963 3.9591 -0.0002 8 6 5.3422 5.1180 0.0003 9 6 6.0264 6.4607 0.0008 10 1 7.1071 6.3178 0.0012 11 6 5.6155 7.2431 -1.2481 12 6 5.6153 7.2421 1.2504 13 6 6.3920 8.5320 1.3144 14 1 7.1075 8.7704 0.5413 15 6 6.1935 9.4048 2.3630 16 7 5.3224 9.1143 3.3046 17 14 7.1618 11.0000 2.4465 18 1 8.0705 11.0893 1.2754 19 1 6.2228 12.1504 2.4337 20 1 7.9623 11.0284 3.6969 21 6 3.9614 5.0471 0.0064 22 6 3.3318 3.8175 0.0006 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5140 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9562 0.8900 29 1 1.6768 1.9562 -0.8900 30 1 6.0610 1.8221 0.0002 31 1 7.1748 4.0172 -0.0006 32 1 4.5349 7.3860 -1.2481 33 1 6.1107 8.2141 -1.2479 34 1 5.9084 6.6864 -2.1383 35 1 5.8273 6.6458 2.1379 36 1 4.5486 7.4620 1.2067 37 1 5.1831 9.7282 4.0425 38 1 3.3746 5.9537 0.0115 39 1 2.2531 3.7626 0.0008 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107573064.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:56 Heat of formation + Delta-G solvation = -46.865917 kcal Electronic energy + Delta-G solvation = -17404.352104 eV Core-core repulsion = 14697.035747 eV Total energy + Delta-G solvation = -2707.316357 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.93155 -37.85507 -34.82558 -33.80954 -32.12561 -30.64964 -28.70792 -26.90099 -26.44911 -23.71946 -22.91547 -21.91293 -21.04672 -19.11955 -17.96063 -16.49014 -16.30923 -15.71285 -14.83803 -14.43452 -14.22892 -14.02372 -13.96077 -13.34486 -12.78378 -12.73040 -12.57551 -12.29407 -12.17743 -12.04577 -11.56307 -11.32793 -11.29838 -10.96051 -10.88331 -10.63671 -10.55084 -10.33226 -10.29877 -9.75629 -9.27231 -8.98614 -8.61151 -8.33130 -7.60391 -5.97654 -3.99532 1.73107 1.86444 3.27256 3.31841 3.39605 3.43275 4.18292 4.47727 4.67225 4.69035 5.00227 5.12675 5.17936 5.21334 5.29261 5.38002 5.41845 5.51971 5.67377 5.73770 5.82099 5.82475 5.92608 6.02710 6.07196 6.26966 6.35130 6.44865 6.67294 6.75998 6.81173 7.02282 7.07223 7.20315 7.27915 7.67698 7.71259 7.85138 8.02456 8.44383 9.07041 9.63983 11.13530 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.038541 B = 0.003928 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.327677 B = 7126.173679 C = 7448.021749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.059 3.941 4 O -0.322 6.322 5 C 0.107 3.893 6 C -0.153 4.153 7 C -0.087 4.087 8 C -0.087 4.087 9 C -0.052 4.052 10 H 0.064 0.936 11 C -0.128 4.128 12 C 0.033 3.967 13 C -0.515 4.515 14 H 0.057 0.943 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.073 4.073 22 C -0.206 4.206 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.032 0.968 35 H 0.016 0.984 36 H 0.018 0.982 37 H 0.259 0.741 38 H 0.125 0.875 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.609 -15.069 -7.708 18.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.016 4.016 4 O -0.237 6.237 5 C 0.062 3.938 6 C -0.171 4.171 7 C -0.105 4.105 8 C -0.087 4.087 9 C -0.070 4.070 10 H 0.083 0.917 11 C -0.186 4.186 12 C -0.004 4.004 13 C -0.554 4.554 14 H 0.076 0.924 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.717 3.283 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.091 4.091 22 C -0.225 4.225 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.034 0.966 36 H 0.036 0.964 37 H 0.069 0.931 38 H 0.143 0.857 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.606 -15.192 -7.549 18.205 hybrid contribution 0.241 1.091 0.283 1.152 sum -6.365 -14.102 -7.266 17.093 Atomic orbital electron populations 1.21691 0.94416 1.02326 1.02289 1.21472 0.95911 0.95159 1.03508 1.22791 0.79146 0.98309 1.01384 1.85986 1.20732 1.27555 1.89385 1.18879 0.92241 0.83694 0.98963 1.20312 0.91176 0.98326 1.07326 1.20925 0.99727 0.91045 0.98772 1.20255 0.93596 0.96101 0.98740 1.20319 0.98390 0.90031 0.98264 0.91726 1.21720 1.00893 1.00280 0.95660 1.19156 0.96735 0.93872 0.90638 1.21291 1.22557 1.03665 1.07838 0.92450 1.25017 0.95432 0.98273 0.95766 1.69978 1.34773 1.36772 1.11951 0.86581 0.80002 0.83753 0.77935 1.19740 1.21097 1.21090 1.20884 0.94553 0.96750 0.96902 1.21169 0.99451 0.92522 1.09363 0.92387 0.91885 0.92309 0.91008 0.90932 0.92149 0.92294 0.85940 0.85681 0.93523 0.91649 0.94891 0.96593 0.96405 0.93125 0.85667 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.12 -1.06 6.30 -26.74 -0.17 -1.23 16 3 C 0.06 0.65 4.74 37.15 0.18 0.82 16 4 O -0.32 -4.62 10.14 -19.42 -0.20 -4.82 16 5 C 0.11 1.69 6.69 -39.22 -0.26 1.43 16 6 C -0.15 -2.41 9.99 -39.43 -0.39 -2.80 16 7 C -0.09 -1.45 9.66 -39.61 -0.38 -1.84 16 8 C -0.09 -1.62 4.78 -104.60 -0.50 -2.12 16 9 C -0.05 -1.07 2.51 -91.78 -0.23 -1.30 16 10 H 0.06 1.32 7.87 -51.92 -0.41 0.92 16 11 C -0.13 -2.43 8.82 37.15 0.33 -2.10 16 12 C 0.03 0.85 4.18 -27.88 -0.12 0.73 16 13 C -0.52 -14.33 8.41 -34.44 -0.29 -14.62 16 14 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 17 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 C -0.07 -1.30 8.75 -39.60 -0.35 -1.65 16 22 C -0.21 -3.28 9.04 -39.43 -0.36 -3.64 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 29 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 30 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 31 H 0.13 1.87 7.94 -52.49 -0.42 1.46 16 32 H 0.05 0.86 7.40 -51.93 -0.38 0.47 16 33 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.48 7.55 -51.93 -0.39 0.09 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 38 H 0.13 2.23 7.15 -52.49 -0.38 1.85 16 39 H 0.12 1.62 6.30 -52.49 -0.33 1.29 16 LS Contribution 320.43 15.07 4.83 4.83 Total: -1.00 -30.49 320.43 -8.28 -38.77 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -6.35 Total: -1.72 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: -2.27 Total: -27.45 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.19 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.20 Total: -4.82 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.49 -8.28 -38.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107573064.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.094 kcal (2) G-P(sol) polarization free energy of solvation -30.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds