Wall clock time and date at job start Mon Mar 30 2020 06:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52988 * 109.47546 * 2 1 4 4 O 1.42906 * 109.47484 * 180.02562 * 3 2 1 5 5 C 1.35897 * 117.00227 * 180.02562 * 4 3 2 6 6 C 1.38733 * 120.05540 * 179.97438 * 5 4 3 7 7 C 1.38147 * 119.94321 * 179.97438 * 6 5 4 8 8 C 1.38264 * 120.05670 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.94557 * 179.97438 * 8 7 6 10 10 H 1.09007 * 109.46722 * 359.97438 * 9 8 7 11 11 C 1.52992 * 109.47613 * 119.99590 * 9 8 7 12 12 C 1.53004 * 109.47084 * 240.00016 * 9 8 7 13 13 C 1.50701 * 109.47211 * 175.00039 * 12 9 8 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 9 15 15 C 1.37871 * 119.99694 * 180.27574 * 13 12 9 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 12 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 12 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 C 1.38269 * 120.11256 * 0.26617 * 8 7 6 22 22 C 1.38146 * 120.05144 * 359.45225 * 21 8 7 23 23 H 1.09000 * 109.47229 * 59.99924 * 1 2 3 24 24 H 1.08994 * 109.47373 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46838 * 300.00157 * 1 2 3 26 26 H 1.09007 * 109.46981 * 239.99196 * 2 1 3 27 27 H 1.09005 * 109.46773 * 119.99990 * 2 1 3 28 28 H 1.09000 * 109.47180 * 60.00053 * 3 2 1 29 29 H 1.09005 * 109.47077 * 299.99804 * 3 2 1 30 30 H 1.08002 * 120.02593 * 359.95673 * 6 5 4 31 31 H 1.08001 * 119.97238 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.46966 * 60.00049 * 11 9 8 33 33 H 1.09003 * 109.47367 * 180.02562 * 11 9 8 34 34 H 1.09004 * 109.47261 * 300.00073 * 11 9 8 35 35 H 1.09000 * 109.47211 * 54.99065 * 12 9 8 36 36 H 1.09007 * 109.46376 * 294.99608 * 12 9 8 37 37 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 38 38 H 1.07994 * 119.97321 * 179.70578 * 21 8 7 39 39 H 1.08002 * 120.02570 * 180.27495 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 8 3.4691 1.4423 -0.0006 5 6 4.0861 2.6532 -0.0001 6 6 5.4715 2.7270 -0.0001 7 6 6.0963 3.9591 -0.0002 8 6 5.3422 5.1180 0.0003 9 6 6.0264 6.4607 0.0008 10 1 7.1071 6.3178 0.0012 11 6 5.6155 7.2431 -1.2481 12 6 5.6153 7.2421 1.2504 13 6 6.3920 8.5320 1.3144 14 1 7.1075 8.7704 0.5413 15 6 6.1935 9.4048 2.3630 16 7 5.3224 9.1143 3.3046 17 14 7.1618 11.0000 2.4465 18 1 8.0705 11.0893 1.2754 19 1 6.2228 12.1504 2.4337 20 1 7.9623 11.0284 3.6969 21 6 3.9614 5.0471 0.0064 22 6 3.3318 3.8175 0.0006 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5140 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9562 0.8900 29 1 1.6768 1.9562 -0.8900 30 1 6.0610 1.8221 0.0002 31 1 7.1748 4.0172 -0.0006 32 1 4.5349 7.3860 -1.2481 33 1 6.1107 8.2141 -1.2479 34 1 5.9084 6.6864 -2.1383 35 1 5.8273 6.6458 2.1379 36 1 4.5486 7.4620 1.2067 37 1 5.1831 9.7282 4.0425 38 1 3.3746 5.9537 0.0115 39 1 2.2531 3.7626 0.0008 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107573064.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:55 Heat of formation + Delta-G solvation = -62.202879 kcal Electronic energy + Delta-G solvation = -17405.017164 eV Core-core repulsion = 14697.035747 eV Total energy + Delta-G solvation = -2707.981417 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.14092 -39.13104 -36.36760 -34.80568 -34.03630 -31.93067 -30.16037 -28.69536 -27.38064 -25.56443 -24.13308 -23.25863 -22.02305 -20.71284 -19.12327 -18.52678 -17.20996 -17.02006 -16.56754 -16.09305 -15.30846 -15.22954 -15.06245 -14.64861 -14.43964 -14.21631 -13.94699 -13.48201 -13.32170 -13.21873 -12.96549 -12.80481 -12.77051 -12.31241 -12.22585 -12.13990 -11.94172 -11.81620 -11.58051 -11.40371 -11.08388 -10.98161 -10.52992 -9.90070 -8.93630 -8.16132 -6.26169 0.44031 0.53475 1.40698 1.41310 1.54211 2.24994 2.42751 2.86338 3.16938 3.83656 3.95321 3.96114 4.00873 4.09781 4.30121 4.32490 4.44378 4.51895 4.55229 4.62983 4.68215 4.73772 4.80940 4.88998 5.10694 5.11434 5.18486 5.20180 5.30466 5.34641 5.37343 5.40421 5.50836 5.54442 5.67477 5.87615 5.87879 5.97130 6.29090 6.50276 6.90277 7.42303 8.95653 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.038541 B = 0.003928 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.327677 B = 7126.173679 C = 7448.021749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.049 3.951 4 O -0.328 6.328 5 C 0.108 3.892 6 C -0.155 4.155 7 C -0.088 4.088 8 C -0.111 4.111 9 C -0.042 4.042 10 H 0.065 0.935 11 C -0.122 4.122 12 C 0.042 3.958 13 C -0.529 4.529 14 H 0.064 0.936 15 C -0.002 4.002 16 N -0.936 5.936 17 Si 0.961 3.039 18 H -0.260 1.260 19 H -0.280 1.280 20 H -0.281 1.281 21 C -0.087 4.087 22 C -0.207 4.207 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.060 0.940 35 H -0.020 1.020 36 H -0.007 1.007 37 H 0.261 0.739 38 H 0.116 0.884 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.450 -15.913 -8.745 19.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.025 4.025 4 O -0.243 6.243 5 C 0.063 3.937 6 C -0.173 4.173 7 C -0.106 4.106 8 C -0.112 4.112 9 C -0.061 4.061 10 H 0.084 0.916 11 C -0.179 4.179 12 C 0.005 3.995 13 C -0.567 4.567 14 H 0.083 0.917 15 C -0.200 4.200 16 N -0.577 5.577 17 Si 0.786 3.214 18 H -0.184 1.184 19 H -0.206 1.206 20 H -0.207 1.207 21 C -0.105 4.105 22 C -0.225 4.225 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.079 0.921 35 H -0.001 1.001 36 H 0.012 0.988 37 H 0.070 0.930 38 H 0.134 0.866 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.450 -16.049 -8.603 19.318 hybrid contribution 0.116 1.236 0.615 1.386 sum -6.334 -14.812 -7.989 17.982 Atomic orbital electron populations 1.21690 0.92899 1.03282 1.02577 1.21488 0.97085 0.93488 1.03571 1.23110 0.77369 1.00167 1.01898 1.85997 1.22661 1.26640 1.88970 1.19043 0.92584 0.84226 0.97847 1.20583 0.91553 0.98739 1.06443 1.21096 1.00547 0.90769 0.98182 1.20136 0.94088 0.95639 1.01291 1.20101 0.98541 0.90956 0.96493 0.91646 1.21641 1.00641 0.99692 0.95933 1.18984 0.95052 0.93595 0.91839 1.21704 1.22614 1.04460 1.07938 0.91745 1.25957 0.96476 1.02133 0.95396 1.70119 1.36499 1.38297 1.12737 0.85450 0.78591 0.79029 0.78302 1.18371 1.20571 1.20698 1.20902 0.94431 0.97343 0.97829 1.21342 1.00672 0.91798 1.08695 0.91903 0.90627 0.92247 0.90730 0.91117 0.92000 0.91374 0.83665 0.84101 0.93709 0.92916 0.92125 1.00120 0.98840 0.92986 0.86641 0.84028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.12 -1.80 6.30 30.59 0.19 -1.61 16 3 C 0.05 0.99 4.74 71.98 0.34 1.33 16 4 O -0.33 -8.80 10.14 -92.39 -0.94 -9.74 16 5 C 0.11 3.26 6.69 22.51 0.15 3.41 16 6 C -0.15 -4.62 9.99 22.37 0.22 -4.39 16 7 C -0.09 -2.87 9.66 22.25 0.22 -2.65 16 8 C -0.11 -4.17 4.78 -19.85 -0.09 -4.27 16 9 C -0.04 -1.78 2.51 -11.54 -0.03 -1.81 16 10 H 0.07 2.68 7.87 -2.38 -0.02 2.66 16 11 C -0.12 -4.58 8.82 71.98 0.63 -3.94 16 12 C 0.04 2.26 4.18 29.85 0.12 2.38 16 13 C -0.53 -29.92 8.41 25.60 0.22 -29.70 16 14 H 0.06 3.47 7.06 -2.91 -0.02 3.45 16 15 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 16 N -0.94 -57.65 13.29 21.45 0.28 -57.36 16 17 Si 0.96 44.52 29.54 68.60 2.03 46.54 16 18 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 C -0.09 -3.13 8.75 22.26 0.19 -2.93 16 22 C -0.21 -6.38 9.04 22.37 0.20 -6.18 16 23 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.06 1.22 7.66 -2.39 -0.02 1.21 16 29 H 0.07 1.25 7.66 -2.38 -0.02 1.23 16 30 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 31 H 0.14 4.02 7.94 -2.91 -0.02 4.00 16 32 H 0.04 1.66 7.40 -2.39 -0.02 1.64 16 33 H 0.05 2.08 6.95 -2.39 -0.02 2.06 16 34 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 35 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 36 H -0.01 -0.39 7.55 -2.38 -0.02 -0.41 16 37 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 38 H 0.12 4.27 7.15 -2.91 -0.02 4.25 16 39 H 0.14 3.62 6.30 -2.91 -0.02 3.61 16 Total: -1.00 -65.72 320.43 5.92 -59.80 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 1.00 Total: 11.75 kcal Atomic # 6 Polarization: -54.54 SS G_CDS: 3.55 Total: -50.99 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.28 Total: -57.36 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.94 Total: -9.74 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -65.72 5.92 -59.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107573064.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.400 kcal (2) G-P(sol) polarization free energy of solvation -65.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds