Wall clock time and date at job start Mon Mar 30 2020 06:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34853 * 125.89051 * 2 1 4 4 C 1.40890 * 107.41905 * 180.02562 * 3 2 1 5 5 C 1.50692 * 126.29128 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.52643 * 359.87393 * 5 4 3 7 7 C 1.53117 * 109.57683 * 239.71190 * 5 4 3 8 8 C 1.53041 * 109.27966 * 182.41209 * 7 5 4 9 9 N 1.46828 * 109.51918 * 59.18134 * 8 7 5 10 10 C 1.46852 * 111.20544 * 298.24887 * 9 8 7 11 11 H 1.08995 * 109.45987 * 181.75647 * 10 9 8 12 12 C 1.50694 * 109.46537 * 301.73849 * 10 9 8 13 13 H 1.08000 * 120.00563 * 120.02219 * 12 10 9 14 14 C 1.37885 * 119.99902 * 300.02382 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.53036 * 109.51260 * 61.74982 * 10 9 8 21 21 C 1.34854 * 107.41409 * 0.22782 * 4 3 2 22 22 N 1.36339 * 108.22157 * 359.63397 * 21 4 3 23 23 C 1.46492 * 125.63911 * 180.14543 * 22 21 4 24 24 H 1.09000 * 109.46881 * 89.97538 * 1 2 3 25 25 H 1.08999 * 109.46935 * 209.96805 * 1 2 3 26 26 H 1.08996 * 109.47203 * 329.97665 * 1 2 3 27 27 H 1.08006 * 126.29048 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.50489 * 302.35228 * 7 5 4 29 29 H 1.08995 * 109.50241 * 62.46714 * 7 5 4 30 30 H 1.09006 * 109.45983 * 179.19713 * 8 7 5 31 31 H 1.08999 * 109.46235 * 299.17404 * 8 7 5 32 32 H 1.00893 * 110.98460 * 174.16092 * 9 8 7 33 33 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 34 34 H 1.08999 * 109.50639 * 60.76594 * 20 10 9 35 35 H 1.09004 * 109.49992 * 180.84325 * 20 10 9 36 36 H 1.08004 * 125.88562 * 179.75546 * 21 4 3 37 37 H 1.09002 * 109.47213 * 270.26937 * 23 22 21 38 38 H 1.09003 * 109.47358 * 30.26363 * 23 22 21 39 39 H 1.09000 * 109.47473 * 150.26729 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2976 1.0925 0.0000 4 6 3.6339 0.6461 -0.0006 5 6 4.8647 1.5155 -0.0014 6 1 4.5695 2.5648 -0.0036 7 6 5.7029 1.2171 -1.2475 8 6 6.9800 2.0596 -1.2111 9 7 7.7434 1.7411 0.0020 10 6 6.9767 2.0640 1.2122 11 1 7.5803 1.8463 2.0933 12 6 6.6135 3.5265 1.2012 13 1 5.5758 3.8254 1.2178 14 6 7.6059 4.4832 1.1698 15 7 8.8696 4.1193 1.1501 16 14 7.1556 6.2960 1.1555 17 1 8.3948 7.1136 1.1218 18 1 6.3336 6.5923 -0.0452 19 1 6.3804 6.6231 2.3791 20 6 5.6996 1.2216 1.2481 21 6 3.6090 -0.7022 -0.0061 22 7 2.3063 -1.1046 -0.0006 23 6 1.8421 -2.4940 -0.0008 24 1 -0.3633 0.0004 -1.0277 25 1 -0.3633 -0.8903 0.5133 26 1 -0.3633 0.8897 0.5142 27 1 1.9671 2.1207 0.0004 28 1 5.9652 0.1592 -1.2648 29 1 5.1287 1.4649 -2.1402 30 1 7.5859 1.8388 -2.0900 31 1 6.7173 3.1174 -1.2075 32 1 8.6350 2.2133 0.0022 33 1 9.5678 4.7923 1.1277 34 1 5.9618 0.1639 1.2700 35 1 5.1234 1.4723 2.1388 36 1 4.4722 -1.3513 -0.0116 37 1 1.7267 -2.8384 -1.0285 38 1 2.5713 -3.1208 0.5126 39 1 0.8831 -2.5568 0.5133 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259641792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:12 Heat of formation + Delta-G solvation = 33.729876 kcal Electronic energy + Delta-G solvation = -18476.967422 eV Core-core repulsion = 15805.438712 eV Total energy + Delta-G solvation = -2671.528710 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.96776 -37.52025 -33.51860 -32.18198 -31.53882 -29.93850 -29.52333 -26.11903 -25.57316 -24.87105 -22.35428 -21.34070 -19.50004 -19.06071 -17.78857 -16.40643 -15.80344 -15.25880 -15.05282 -14.43807 -14.00085 -13.23421 -13.18387 -12.98594 -12.85870 -12.55057 -12.37849 -12.31863 -12.16873 -11.74282 -11.55174 -11.45157 -11.16031 -10.90094 -10.81711 -10.51948 -10.10401 -9.80978 -9.36675 -9.17714 -8.93654 -8.38150 -7.99455 -7.46281 -6.84103 -5.91411 -4.06262 2.54853 3.19833 3.32478 3.37116 3.40565 3.45308 4.44786 4.77456 5.02836 5.08285 5.20862 5.27814 5.32699 5.57202 5.57334 5.78513 5.86648 5.92105 6.04714 6.09665 6.28618 6.41265 6.60396 6.63662 6.73278 6.79707 6.90220 7.01893 7.20481 7.22524 7.33869 7.40743 7.52992 7.64288 7.75786 7.84818 7.90805 8.35101 8.81715 9.04717 9.25028 9.63217 11.05159 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.032557 B = 0.005805 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.830442 B = 4822.095457 C = 5292.181561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.003 4.003 3 C -0.192 4.192 4 C -0.135 4.135 5 C -0.008 4.008 6 H 0.075 0.925 7 C -0.093 4.093 8 C 0.068 3.932 9 N -0.690 5.690 10 C 0.203 3.797 11 H 0.036 0.964 12 C -0.532 4.532 13 H 0.054 0.946 14 C 0.064 3.936 15 N -0.898 5.898 16 Si 0.888 3.112 17 H -0.288 1.288 18 H -0.278 1.278 19 H -0.278 1.278 20 C -0.086 4.086 21 C -0.021 4.021 22 N -0.455 5.455 23 C 0.077 3.923 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.130 0.870 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.353 0.647 33 H 0.263 0.737 34 H 0.038 0.962 35 H 0.045 0.955 36 H 0.157 0.843 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.925 -10.293 -3.481 16.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.114 4.114 3 C -0.217 4.217 4 C -0.141 4.141 5 C -0.027 4.027 6 H 0.094 0.906 7 C -0.132 4.132 8 C -0.062 4.062 9 N -0.323 5.323 10 C 0.095 3.905 11 H 0.054 0.946 12 C -0.572 4.572 13 H 0.073 0.927 14 C -0.137 4.137 15 N -0.538 5.538 16 Si 0.716 3.284 17 H -0.214 1.214 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.124 4.124 21 C -0.148 4.148 22 N -0.133 5.133 23 C -0.066 4.066 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.148 0.852 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.174 0.826 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.174 0.826 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.034 -11.257 -3.474 17.569 hybrid contribution -0.129 2.038 0.007 2.042 sum -13.163 -9.219 -3.467 16.440 Atomic orbital electron populations 1.20214 0.88943 1.02474 1.01855 1.20200 0.92928 0.86175 1.12067 1.20659 0.92657 0.97162 1.11238 1.19819 0.94931 0.92880 1.06467 1.19540 0.89942 0.97623 0.95645 0.90646 1.21495 0.95898 0.99461 0.96306 1.21550 0.93721 0.97834 0.93127 1.60926 1.07942 1.61752 1.01716 1.19075 0.89825 0.91646 0.89950 0.94606 1.21842 0.92911 0.92367 1.50077 0.92731 1.25004 0.95013 0.98827 0.94877 1.69726 0.98959 1.33715 1.51396 0.86716 0.77652 0.85390 0.78623 1.21390 1.20348 1.20314 1.21532 0.96968 0.98282 0.95646 1.21531 0.85122 0.95764 1.12412 1.43758 1.06111 1.05161 1.58265 1.21874 1.01196 0.80949 1.02535 0.91751 0.92514 0.90594 0.85248 0.93088 0.93820 0.94346 0.94610 0.82581 0.92742 0.94304 0.93650 0.82576 0.91592 0.90211 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.10 36.01 0.36 -0.43 16 2 C 0.00 -0.05 6.89 -81.79 -0.56 -0.61 16 3 C -0.19 -3.26 10.70 -39.78 -0.43 -3.69 16 4 C -0.13 -2.46 4.88 -104.82 -0.51 -2.98 16 5 C -0.01 -0.17 2.37 -91.65 -0.22 -0.39 16 6 H 0.08 1.71 6.72 -51.93 -0.35 1.36 16 7 C -0.09 -1.87 5.28 -26.65 -0.14 -2.01 16 8 C 0.07 1.53 6.30 -3.84 -0.02 1.51 16 9 N -0.69 -16.92 6.60 -108.00 -0.71 -17.63 16 10 C 0.20 5.19 3.04 -68.88 -0.21 4.98 16 11 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 12 C -0.53 -14.51 6.47 -34.44 -0.22 -14.73 16 13 H 0.05 1.50 6.76 -52.49 -0.35 1.14 16 14 C 0.06 1.76 5.39 -17.82 -0.10 1.67 16 15 N -0.90 -25.34 11.56 55.43 0.64 -24.70 16 16 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C -0.09 -1.91 4.76 -26.65 -0.13 -2.04 16 21 C -0.02 -0.33 10.69 -16.75 -0.18 -0.51 16 22 N -0.46 -6.31 3.15 -119.90 -0.38 -6.69 16 23 C 0.08 0.69 10.92 59.84 0.65 1.35 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.48 7.05 -51.93 -0.37 0.12 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.13 2.10 8.06 -52.48 -0.42 1.68 16 28 H 0.05 0.98 7.95 -51.93 -0.41 0.57 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.89 6.99 -51.93 -0.36 0.53 16 32 H 0.35 9.33 6.95 -39.30 -0.27 9.06 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.04 0.82 7.96 -51.93 -0.41 0.41 16 35 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.16 2.34 8.06 -52.48 -0.42 1.92 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.56 7.02 -51.93 -0.36 0.20 16 LS Contribution 306.92 15.07 4.63 4.63 Total: -1.00 -29.62 306.92 -8.80 -38.42 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.26 Total: 7.36 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -1.70 Total: -17.87 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -0.45 Total: -49.01 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.62 -8.80 -38.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259641792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.153 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds