Wall clock time and date at job start Mon Mar 30 2020 06:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34853 * 125.89051 * 2 1 4 4 C 1.40890 * 107.41905 * 180.02562 * 3 2 1 5 5 C 1.50692 * 126.29128 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.52643 * 359.87393 * 5 4 3 7 7 C 1.53117 * 109.57683 * 239.71190 * 5 4 3 8 8 C 1.53041 * 109.27966 * 182.41209 * 7 5 4 9 9 N 1.46828 * 109.51918 * 59.18134 * 8 7 5 10 10 C 1.46852 * 111.20544 * 298.24887 * 9 8 7 11 11 H 1.08995 * 109.45987 * 181.75647 * 10 9 8 12 12 C 1.50694 * 109.46537 * 301.73849 * 10 9 8 13 13 H 1.08000 * 120.00563 * 120.02219 * 12 10 9 14 14 C 1.37885 * 119.99902 * 300.02382 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.53036 * 109.51260 * 61.74982 * 10 9 8 21 21 C 1.34854 * 107.41409 * 0.22782 * 4 3 2 22 22 N 1.36339 * 108.22157 * 359.63397 * 21 4 3 23 23 C 1.46492 * 125.63911 * 180.14543 * 22 21 4 24 24 H 1.09000 * 109.46881 * 89.97538 * 1 2 3 25 25 H 1.08999 * 109.46935 * 209.96805 * 1 2 3 26 26 H 1.08996 * 109.47203 * 329.97665 * 1 2 3 27 27 H 1.08006 * 126.29048 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.50489 * 302.35228 * 7 5 4 29 29 H 1.08995 * 109.50241 * 62.46714 * 7 5 4 30 30 H 1.09006 * 109.45983 * 179.19713 * 8 7 5 31 31 H 1.08999 * 109.46235 * 299.17404 * 8 7 5 32 32 H 1.00893 * 110.98460 * 174.16092 * 9 8 7 33 33 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 34 34 H 1.08999 * 109.50639 * 60.76594 * 20 10 9 35 35 H 1.09004 * 109.49992 * 180.84325 * 20 10 9 36 36 H 1.08004 * 125.88562 * 179.75546 * 21 4 3 37 37 H 1.09002 * 109.47213 * 270.26937 * 23 22 21 38 38 H 1.09003 * 109.47358 * 30.26363 * 23 22 21 39 39 H 1.09000 * 109.47473 * 150.26729 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2976 1.0925 0.0000 4 6 3.6339 0.6461 -0.0006 5 6 4.8647 1.5155 -0.0014 6 1 4.5695 2.5648 -0.0036 7 6 5.7029 1.2171 -1.2475 8 6 6.9800 2.0596 -1.2111 9 7 7.7434 1.7411 0.0020 10 6 6.9767 2.0640 1.2122 11 1 7.5803 1.8463 2.0933 12 6 6.6135 3.5265 1.2012 13 1 5.5758 3.8254 1.2178 14 6 7.6059 4.4832 1.1698 15 7 8.8696 4.1193 1.1501 16 14 7.1556 6.2960 1.1555 17 1 8.3948 7.1136 1.1218 18 1 6.3336 6.5923 -0.0452 19 1 6.3804 6.6231 2.3791 20 6 5.6996 1.2216 1.2481 21 6 3.6090 -0.7022 -0.0061 22 7 2.3063 -1.1046 -0.0006 23 6 1.8421 -2.4940 -0.0008 24 1 -0.3633 0.0004 -1.0277 25 1 -0.3633 -0.8903 0.5133 26 1 -0.3633 0.8897 0.5142 27 1 1.9671 2.1207 0.0004 28 1 5.9652 0.1592 -1.2648 29 1 5.1287 1.4649 -2.1402 30 1 7.5859 1.8388 -2.0900 31 1 6.7173 3.1174 -1.2075 32 1 8.6350 2.2133 0.0022 33 1 9.5678 4.7923 1.1277 34 1 5.9618 0.1639 1.2700 35 1 5.1234 1.4723 2.1388 36 1 4.4722 -1.3513 -0.0116 37 1 1.7267 -2.8384 -1.0285 38 1 2.5713 -3.1208 0.5126 39 1 0.8831 -2.5568 0.5133 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259641792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:11 Heat of formation + Delta-G solvation = 16.307325 kcal Electronic energy + Delta-G solvation = -18477.722921 eV Core-core repulsion = 15805.438712 eV Total energy + Delta-G solvation = -2672.284208 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.13427 -39.33113 -35.15118 -33.82940 -32.70978 -31.52726 -31.24251 -27.31561 -27.03227 -26.46683 -23.92980 -23.18572 -20.77559 -20.67123 -19.28703 -17.84558 -17.59716 -16.88330 -16.40867 -16.18692 -15.10577 -15.00055 -14.65564 -14.55874 -13.97586 -13.94094 -13.77993 -13.40718 -13.34975 -13.23089 -12.96296 -12.93287 -12.76391 -12.61739 -12.46325 -12.36783 -12.08019 -11.54501 -11.18143 -11.08957 -10.82882 -10.43445 -9.20498 -8.89871 -8.68156 -8.02266 -6.25688 1.37746 1.37879 1.41996 1.45866 2.14015 2.21721 2.40181 3.12388 3.98787 4.05484 4.09879 4.25022 4.34902 4.41980 4.46843 4.53182 4.56281 4.73100 4.77665 4.80961 4.85381 4.90903 4.99800 5.07211 5.13180 5.19343 5.25329 5.34032 5.46302 5.52181 5.60919 5.68305 5.76719 5.88185 6.21475 6.26054 6.43316 6.68311 6.74676 6.96127 7.14053 7.46916 8.90807 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.032557 B = 0.005805 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.830442 B = 4822.095457 C = 5292.181561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.011 3.989 3 C -0.232 4.232 4 C -0.166 4.166 5 C 0.003 3.997 6 H 0.044 0.956 7 C -0.084 4.084 8 C 0.069 3.931 9 N -0.685 5.685 10 C 0.202 3.798 11 H 0.002 0.998 12 C -0.543 4.543 13 H 0.045 0.955 14 C 0.021 3.979 15 N -0.919 5.919 16 Si 0.946 3.054 17 H -0.282 1.282 18 H -0.276 1.276 19 H -0.274 1.274 20 C -0.075 4.075 21 C -0.022 4.022 22 N -0.451 5.451 23 C 0.067 3.933 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.122 0.878 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.006 0.994 32 H 0.340 0.660 33 H 0.264 0.736 34 H 0.049 0.951 35 H 0.034 0.966 36 H 0.167 0.833 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.937 -11.783 -4.197 19.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.102 4.102 3 C -0.257 4.257 4 C -0.172 4.172 5 C -0.016 4.016 6 H 0.062 0.938 7 C -0.122 4.122 8 C -0.061 4.061 9 N -0.317 5.317 10 C 0.093 3.907 11 H 0.020 0.980 12 C -0.583 4.583 13 H 0.063 0.937 14 C -0.178 4.178 15 N -0.559 5.559 16 Si 0.773 3.227 17 H -0.207 1.207 18 H -0.201 1.201 19 H -0.200 1.200 20 C -0.113 4.113 21 C -0.151 4.151 22 N -0.128 5.128 23 C -0.073 4.073 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.140 0.860 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.025 0.975 32 H 0.159 0.841 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.185 0.815 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.070 -12.775 -4.191 20.196 hybrid contribution 0.471 2.439 0.235 2.495 sum -14.599 -10.336 -3.956 18.320 Atomic orbital electron populations 1.20341 0.85770 1.03930 1.03267 1.20731 0.94781 0.85512 1.09151 1.20775 0.92866 0.98028 1.13997 1.19625 0.94361 0.93774 1.09429 1.19265 0.91021 0.96492 0.94834 0.93757 1.21420 0.94523 0.99520 0.96705 1.21627 0.95036 0.96659 0.92825 1.60944 1.07451 1.61133 1.02156 1.19024 0.90779 0.91685 0.89226 0.97964 1.21996 0.92491 0.93576 1.50237 0.93699 1.25664 0.94988 1.02581 0.94604 1.69829 0.99558 1.34788 1.51750 0.85791 0.77512 0.80875 0.78564 1.20702 1.20135 1.19988 1.21381 0.95471 0.98065 0.96391 1.21602 0.86654 0.95033 1.11812 1.44069 1.05200 1.07011 1.56486 1.22251 1.02591 0.78204 1.04254 0.90224 0.90112 0.90129 0.85951 0.91803 0.92339 0.92464 0.97547 0.84083 0.92673 0.93217 0.94684 0.81546 0.89875 0.88940 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.10 71.24 0.72 -0.57 16 2 C 0.01 0.28 6.89 41.08 0.28 0.56 16 3 C -0.23 -7.81 10.70 22.14 0.24 -7.57 16 4 C -0.17 -6.01 4.88 -20.00 -0.10 -6.10 16 5 C 0.00 0.13 2.37 -11.46 -0.03 0.11 16 6 H 0.04 2.09 6.72 -2.39 -0.02 2.08 16 7 C -0.08 -3.30 5.28 30.65 0.16 -3.14 16 8 C 0.07 3.11 6.30 86.33 0.54 3.66 16 9 N -0.69 -34.29 6.60 -495.60 -3.27 -37.57 16 10 C 0.20 10.65 3.04 44.19 0.13 10.78 16 11 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 12 C -0.54 -30.61 6.47 25.60 0.17 -30.45 16 13 H 0.04 2.57 6.76 -2.91 -0.02 2.55 16 14 C 0.02 1.17 5.39 84.66 0.46 1.63 16 15 N -0.92 -52.91 11.56 21.45 0.25 -52.66 16 16 Si 0.95 44.82 29.54 68.60 2.03 46.84 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 19 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 20 C -0.07 -3.40 4.76 30.65 0.15 -3.25 16 21 C -0.02 -0.66 10.69 83.21 0.89 0.23 16 22 N -0.45 -11.21 3.15 -533.25 -1.68 -12.88 16 23 C 0.07 0.94 10.92 127.77 1.39 2.33 16 24 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.08 1.00 7.05 -2.39 -0.02 0.98 16 26 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 28 H 0.06 2.36 7.95 -2.39 -0.02 2.34 16 29 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.01 0.32 6.99 -2.39 -0.02 0.30 16 32 H 0.34 18.45 6.95 -89.70 -0.62 17.82 16 33 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 34 H 0.05 2.11 7.96 -2.39 -0.02 2.09 16 35 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.17 4.63 8.06 -2.91 -0.02 4.61 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.10 0.97 7.02 -2.39 -0.02 0.95 16 Total: -1.00 -65.19 306.92 2.73 -62.46 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.40 Total: 25.60 kcal Atomic # 6 Polarization: -36.80 SS G_CDS: 5.01 Total: -31.79 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -4.70 Total: -103.11 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -65.19 2.73 -62.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259641792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.770 kcal (2) G-P(sol) polarization free energy of solvation -65.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds