Wall clock time and date at job start Mon Mar 30 2020 06:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.36551 * 125.85811 * 2 1 4 4 H 0.96998 * 125.67698 * 0.19532 * 3 2 1 5 5 C 1.35831 * 108.64880 * 179.97438 * 3 2 1 6 6 C 1.35260 * 108.18780 * 0.08073 * 5 3 2 7 7 C 1.35076 * 125.85762 * 179.97438 * 2 1 3 8 8 C 1.50702 * 126.36883 * 359.97438 * 7 2 1 9 9 H 1.09000 * 109.46990 * 173.93640 * 8 7 2 10 10 C 1.50704 * 109.47202 * 53.94103 * 8 7 2 11 11 H 1.08000 * 119.99748 * 354.55491 * 10 8 7 12 12 C 1.37873 * 120.00120 * 174.56324 * 10 8 7 13 13 N 1.31512 * 119.99922 * 352.43802 * 12 10 8 14 14 Si 1.86799 * 120.00026 * 172.44166 * 12 10 8 15 15 H 1.48504 * 109.47182 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47350 * 119.99643 * 14 12 10 17 17 H 1.48503 * 109.47138 * 240.00015 * 14 12 10 18 18 C 1.52999 * 109.47422 * 293.93717 * 8 7 2 19 19 N 1.46907 * 109.46899 * 295.13247 * 18 8 7 20 20 C 1.50747 * 124.34850 * 179.82610 * 6 5 3 21 21 C 1.53385 * 108.37665 * 343.57308 * 20 6 5 22 22 C 1.53114 * 109.45246 * 49.76166 * 21 20 6 23 23 C 1.50902 * 127.80486 * 180.15859 * 5 3 2 24 24 H 1.09005 * 109.47314 * 95.09430 * 1 2 3 25 25 H 1.09001 * 109.47162 * 215.09791 * 1 2 3 26 26 H 1.08998 * 109.46849 * 335.09882 * 1 2 3 27 27 H 0.97004 * 119.99765 * 180.02562 * 13 12 10 28 28 H 1.08996 * 109.46561 * 55.12807 * 18 8 7 29 29 H 1.08996 * 109.47092 * 175.13500 * 18 8 7 30 30 H 1.00899 * 110.99918 * 184.18946 * 19 18 8 31 31 H 1.00895 * 111.00029 * 308.15238 * 19 18 8 32 32 H 1.09007 * 109.68468 * 103.29029 * 20 6 5 33 33 H 1.08995 * 109.68697 * 223.85021 * 20 6 5 34 34 H 1.09008 * 109.47292 * 169.75271 * 21 20 6 35 35 H 1.08993 * 109.47201 * 289.76521 * 21 20 6 36 36 H 1.09006 * 109.46147 * 49.87520 * 22 21 20 37 37 H 1.09003 * 109.46440 * 169.85643 * 22 21 20 38 38 H 1.08994 * 109.67620 * 283.07240 * 23 5 3 39 39 H 1.09001 * 109.67365 * 43.61523 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3069 1.1067 0.0000 4 1 1.9997 2.0267 0.0027 5 6 3.6044 0.7048 0.0006 6 6 3.6275 -0.6476 -0.0009 7 6 2.2983 -1.0948 0.0005 8 6 1.8382 -2.5298 0.0017 9 1 2.7004 -3.1878 -0.1067 10 6 0.8881 -2.7538 -1.1465 11 1 0.5732 -1.9205 -1.7571 12 6 0.4206 -4.0223 -1.4171 13 7 0.9149 -5.0566 -0.7726 14 14 -0.9148 -4.2718 -2.6993 15 1 -1.2988 -2.9583 -3.2761 16 1 -0.4063 -5.1569 -3.7778 17 1 -2.1013 -4.8983 -2.0629 18 6 1.1257 -2.8360 1.3205 19 7 2.0828 -2.7309 2.4301 20 6 4.8864 -1.4767 -0.0046 21 6 6.0573 -0.5763 -0.4179 22 6 6.0362 0.7047 0.4206 23 6 4.8407 1.5701 0.0041 24 1 -0.3634 -0.0913 -1.0236 25 1 -0.3633 -0.8408 0.5909 26 1 -0.3633 0.9321 0.4327 27 1 0.5862 -5.9491 -0.9633 28 1 0.3161 -2.1218 1.4703 29 1 0.7177 -3.8462 1.2871 30 1 1.6535 -2.9948 3.3042 31 1 2.9070 -3.2844 2.2502 32 1 5.0656 -1.8768 0.9935 33 1 4.7844 -2.2960 -0.7161 34 1 6.9971 -1.1033 -0.2526 35 1 5.9645 -0.3212 -1.4735 36 1 5.9476 0.4465 1.4759 37 1 6.9601 1.2600 0.2588 38 1 5.0095 1.9730 -0.9945 39 1 4.7145 2.3876 0.7139 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260000011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:59 Heat of formation + Delta-G solvation = -2.340418 kcal Electronic energy + Delta-G solvation = -18932.408955 eV Core-core repulsion = 16259.316120 eV Total energy + Delta-G solvation = -2673.092835 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.15043 -37.42199 -36.78066 -34.06497 -32.91742 -31.62978 -30.55475 -28.88757 -26.99466 -25.68767 -23.74156 -22.46172 -22.14063 -19.52385 -19.16218 -18.32009 -17.59402 -16.54776 -16.03593 -15.80318 -15.16729 -15.09506 -14.62306 -14.52993 -14.21506 -13.96894 -13.77680 -13.53176 -13.38386 -13.08736 -12.97616 -12.78319 -12.53321 -12.41838 -12.24769 -11.73517 -11.61754 -11.50953 -11.31425 -11.05920 -10.95435 -10.39937 -9.23909 -8.87835 -8.21787 -8.01620 -6.12497 1.39277 1.41993 1.52664 1.64066 2.38764 2.54863 2.69814 3.23357 4.04944 4.12546 4.16331 4.17568 4.42674 4.54245 4.60946 4.71221 4.75712 4.84825 4.86073 4.95929 4.96866 5.08596 5.13673 5.19004 5.22574 5.31804 5.36664 5.46134 5.58508 5.59743 5.70849 5.83943 6.03365 6.11062 6.31341 6.57300 6.62019 6.77255 6.83084 7.03729 7.20356 7.53336 9.01303 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.024253 B = 0.007508 C = 0.007174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.200971 B = 3728.386503 C = 3901.826678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.017 4.017 3 N -0.548 5.548 4 H 0.417 0.583 5 C -0.002 4.002 6 C -0.190 4.190 7 C -0.116 4.116 8 C 0.121 3.879 9 H -0.008 1.008 10 C -0.505 4.505 11 H 0.051 0.949 12 C 0.013 3.987 13 N -0.921 5.921 14 Si 0.944 3.056 15 H -0.267 1.267 16 H -0.286 1.286 17 H -0.280 1.280 18 C 0.088 3.912 19 N -0.841 5.841 20 C -0.041 4.041 21 C -0.111 4.111 22 C -0.104 4.104 23 C -0.037 4.037 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.257 0.743 28 H 0.048 0.952 29 H 0.008 0.992 30 H 0.331 0.669 31 H 0.329 0.671 32 H 0.055 0.945 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.225 12.565 3.176 14.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.128 4.128 3 N -0.145 5.145 4 H 0.255 0.745 5 C -0.115 4.115 6 C -0.197 4.197 7 C -0.122 4.122 8 C 0.102 3.898 9 H 0.010 0.990 10 C -0.544 4.544 11 H 0.070 0.930 12 C -0.185 4.185 13 N -0.562 5.562 14 Si 0.770 3.230 15 H -0.191 1.191 16 H -0.212 1.212 17 H -0.205 1.205 18 C -0.043 4.043 19 N -0.368 5.368 20 C -0.079 4.079 21 C -0.148 4.148 22 C -0.142 4.142 23 C -0.075 4.075 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.026 0.974 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.151 13.319 2.991 14.973 hybrid contribution -1.317 -1.633 -0.633 2.191 sum 4.834 11.686 2.358 12.865 Atomic orbital electron populations 1.20174 0.88248 1.01986 1.01651 1.20117 0.93444 0.85891 1.13310 1.41358 1.05075 1.07726 1.60309 0.74512 1.20445 0.85679 0.94186 1.11179 1.19387 0.94384 0.93361 1.12544 1.19370 0.92534 0.94901 1.05352 1.16931 0.93291 0.87889 0.91686 0.98957 1.21476 1.26379 0.92918 1.13619 0.93045 1.25679 0.98685 0.95966 0.98170 1.70090 1.43178 0.98700 1.44197 0.85718 0.79823 0.78111 0.79343 1.19106 1.21248 1.20540 1.21667 0.94219 0.97168 0.91234 1.58896 1.09817 1.63357 1.04742 1.19882 0.92038 0.96315 0.99618 1.21555 0.97187 0.96365 0.99715 1.21475 0.97605 0.95451 0.99633 1.20201 0.88870 0.96121 1.02332 0.92671 0.91655 0.90931 0.93370 0.93384 0.97372 0.85838 0.85953 0.92661 0.94748 0.90555 0.92557 0.92266 0.88807 0.90213 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.32 8.97 71.24 0.64 -1.68 16 2 C -0.02 -0.70 6.87 41.10 0.28 -0.42 16 3 N -0.55 -18.09 6.07 -170.69 -1.04 -19.13 16 4 H 0.42 10.34 8.96 -92.71 -0.83 9.51 16 5 C 0.00 -0.06 7.05 41.32 0.29 0.23 16 6 C -0.19 -7.81 5.93 -20.05 -0.12 -7.93 16 7 C -0.12 -5.36 4.56 -20.10 -0.09 -5.45 16 8 C 0.12 6.37 1.94 -12.28 -0.02 6.35 16 9 H -0.01 -0.46 7.54 -2.39 -0.02 -0.48 16 10 C -0.51 -28.30 7.59 25.60 0.19 -28.11 16 11 H 0.05 2.89 6.55 -2.91 -0.02 2.87 16 12 C 0.01 0.72 5.19 84.65 0.44 1.16 16 13 N -0.92 -54.27 12.06 21.45 0.26 -54.01 16 14 Si 0.94 44.43 29.54 68.60 2.03 46.45 16 15 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 16 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 18 C 0.09 4.28 6.00 86.30 0.52 4.80 16 19 N -0.84 -34.94 9.36 -186.71 -1.75 -36.69 16 20 C -0.04 -1.52 5.86 29.99 0.18 -1.34 16 21 C -0.11 -3.01 5.91 30.76 0.18 -2.83 16 22 C -0.10 -2.31 5.90 30.75 0.18 -2.13 16 23 C -0.04 -0.88 6.30 30.03 0.19 -0.69 16 24 H 0.05 2.08 7.56 -2.38 -0.02 2.06 16 25 H 0.06 2.64 5.44 -2.39 -0.01 2.63 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 27 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.05 2.31 5.49 -2.39 -0.01 2.29 16 29 H 0.01 0.44 6.72 -2.39 -0.02 0.43 16 30 H 0.33 11.87 9.08 -89.69 -0.81 11.06 16 31 H 0.33 13.79 8.93 -89.70 -0.80 12.99 16 32 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.03 1.45 7.98 -2.39 -0.02 1.43 16 34 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.06 1.56 8.11 -2.39 -0.02 1.54 16 36 H 0.06 1.41 8.11 -2.38 -0.02 1.39 16 37 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -66.69 304.08 0.99 -65.70 By element: Atomic # 1 Polarization: 37.10 SS G_CDS: -1.37 Total: 35.73 kcal Atomic # 6 Polarization: -40.91 SS G_CDS: 2.86 Total: -38.06 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -2.53 Total: -109.83 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -66.69 0.99 -65.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260000011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.361 kcal (2) G-P(sol) polarization free energy of solvation -66.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds