Wall clock time and date at job start Mon Mar 30 2020 06:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00391 * 2 1 4 4 C 1.52996 * 109.47116 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47334 * 59.99985 * 4 3 2 6 6 C 1.53002 * 109.47432 * 300.00026 * 4 3 2 7 7 C 1.50706 * 109.47289 * 180.02562 * 4 3 2 8 8 C 1.38259 * 119.99423 * 7.37015 * 7 4 3 9 9 C 1.38214 * 119.99670 * 179.72483 * 8 7 4 10 10 C 1.38260 * 119.99880 * 0.27773 * 9 8 7 11 11 C 1.38216 * 119.99828 * 359.97438 * 10 9 8 12 12 C 1.38207 * 120.00265 * 187.56203 * 7 4 3 13 13 C 1.50702 * 120.00052 * 0.04178 * 12 7 4 14 14 C 1.50698 * 109.47220 * 97.37381 * 13 12 7 15 15 H 1.08000 * 120.00147 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00153 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99889 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 119.99916 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.46988 * 90.00103 * 18 16 14 20 20 H 1.48497 * 109.47013 * 210.00016 * 18 16 14 21 21 H 1.48501 * 109.47172 * 330.00390 * 18 16 14 22 22 H 1.09003 * 109.46834 * 59.99798 * 1 2 3 23 23 H 1.09001 * 109.47514 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47116 * 300.00498 * 1 2 3 25 25 H 1.09001 * 109.46876 * 59.99534 * 3 2 1 26 26 H 1.08994 * 109.47212 * 299.99940 * 3 2 1 27 27 H 1.08999 * 109.47734 * 193.26673 * 5 4 3 28 28 H 1.09003 * 109.47219 * 313.27407 * 5 4 3 29 29 H 1.09002 * 109.46749 * 73.26516 * 5 4 3 30 30 H 1.09003 * 109.47297 * 294.54145 * 6 4 3 31 31 H 1.09008 * 109.47053 * 54.53656 * 6 4 3 32 32 H 1.09002 * 109.47498 * 174.53718 * 6 4 3 33 33 H 1.07993 * 120.00517 * 359.97438 * 8 7 4 34 34 H 1.07997 * 120.00239 * 180.25933 * 9 8 7 35 35 H 1.07999 * 119.99623 * 179.97438 * 10 9 8 36 36 H 1.07999 * 119.99671 * 179.97438 * 11 10 9 37 37 H 1.08995 * 109.47148 * 217.37405 * 13 12 7 38 38 H 1.08997 * 109.47250 * 337.37426 * 13 12 7 39 39 H 0.96993 * 119.99509 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9875 0.4250 -1.2482 6 6 3.9865 0.4254 1.2502 7 6 4.1486 2.5612 0.0013 8 6 3.3449 3.6757 0.1548 9 6 3.9078 4.9380 0.1611 10 6 5.2739 5.0865 0.0081 11 6 6.0766 3.9726 -0.1506 12 6 5.5137 2.7099 -0.1556 13 6 6.3890 1.4954 -0.3282 14 6 6.6588 1.2748 -1.7944 15 1 6.2387 1.9471 -2.5278 16 6 7.4418 0.2147 -2.1995 17 7 7.6768 0.0220 -3.4791 18 14 8.1689 -0.9477 -0.9309 19 1 7.2218 -2.0642 -0.6823 20 1 9.4541 -1.4924 -1.4378 21 1 8.4087 -0.2108 0.3358 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.6886 1.8464 0.8900 26 1 1.6888 1.8463 -0.8899 27 1 5.0317 0.1327 -1.1378 28 1 3.3721 -0.4659 -1.3743 29 1 3.8803 1.0671 -2.1225 30 1 3.7505 1.0132 2.1373 31 1 3.4681 -0.5322 1.3004 32 1 5.0620 0.2544 1.2031 33 1 2.2778 3.5597 0.2739 34 1 3.2806 5.8084 0.2852 35 1 5.7136 6.0729 0.0126 36 1 7.1436 4.0886 -0.2705 37 1 7.3323 1.6500 0.1955 38 1 5.8837 0.6218 0.0836 39 1 8.2273 -0.7240 -3.7640 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260119153.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:38 Heat of formation + Delta-G solvation = -34.561721 kcal Electronic energy + Delta-G solvation = -18898.447939 eV Core-core repulsion = 16191.665132 eV Total energy + Delta-G solvation = -2706.782807 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.20269 -38.80980 -36.54599 -35.21649 -33.23293 -30.74200 -29.51116 -28.31056 -27.89463 -26.42429 -24.65423 -23.48148 -21.71400 -20.18305 -18.93920 -17.71340 -16.89753 -16.68033 -16.61724 -16.18466 -15.71239 -15.17929 -14.84066 -14.62184 -14.53371 -14.32337 -14.06417 -13.50675 -13.15341 -12.99272 -12.90855 -12.60503 -12.56669 -12.40681 -12.10430 -11.90335 -11.84167 -11.68496 -11.50993 -11.16978 -10.79109 -10.64471 -10.52879 -9.55576 -9.23151 -8.24346 -6.22734 0.61382 0.69184 1.35618 1.37002 1.47168 2.36648 2.87553 3.02655 3.10418 3.83595 3.99910 4.07283 4.23109 4.28571 4.35719 4.41053 4.47636 4.57349 4.64141 4.67394 4.76875 4.84220 4.88302 4.91748 5.03910 5.07820 5.12542 5.20457 5.22023 5.31882 5.44853 5.50473 5.63866 5.72422 5.75891 5.91203 6.07352 6.25422 6.32995 6.37457 6.78372 7.34693 8.92268 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.016868 B = 0.009566 C = 0.006937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.550361 B = 2926.260165 C = 4035.244322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.080 3.920 4 C -0.014 4.014 5 C -0.143 4.143 6 C -0.141 4.141 7 C -0.086 4.086 8 C -0.129 4.129 9 C -0.134 4.134 10 C -0.126 4.126 11 C -0.139 4.139 12 C -0.058 4.058 13 C -0.001 4.001 14 C -0.486 4.486 15 H 0.027 0.973 16 C 0.013 3.987 17 N -0.948 5.948 18 Si 0.926 3.074 19 H -0.263 1.263 20 H -0.285 1.285 21 H -0.246 1.246 22 H 0.044 0.956 23 H 0.095 0.905 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.023 0.977 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.142 0.858 34 H 0.150 0.850 35 H 0.141 0.859 36 H 0.110 0.890 37 H 0.017 0.983 38 H 0.060 0.940 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.644 4.873 11.283 17.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C 0.004 3.996 4 C -0.015 4.015 5 C -0.200 4.200 6 C -0.197 4.197 7 C -0.086 4.086 8 C -0.147 4.147 9 C -0.151 4.151 10 C -0.144 4.144 11 C -0.157 4.157 12 C -0.058 4.058 13 C -0.037 4.037 14 C -0.524 4.524 15 H 0.045 0.955 16 C -0.184 4.184 17 N -0.589 5.589 18 Si 0.750 3.250 19 H -0.188 1.188 20 H -0.211 1.211 21 H -0.170 1.170 22 H 0.063 0.937 23 H 0.113 0.887 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.160 0.840 34 H 0.168 0.832 35 H 0.159 0.841 36 H 0.128 0.872 37 H 0.036 0.964 38 H 0.077 0.923 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.451 4.596 11.167 17.345 hybrid contribution 0.648 -0.415 -0.412 0.873 sum -11.803 4.181 10.755 16.506 Atomic orbital electron populations 1.22918 0.79731 1.03677 1.00773 1.87856 1.21169 1.28300 1.95482 1.22567 0.92091 0.84452 1.00525 1.19328 0.93339 0.92132 0.96655 1.22247 1.03669 0.98619 0.95476 1.21996 1.01340 1.00395 0.96018 1.19692 0.92890 0.94889 1.01175 1.21313 1.00211 0.92017 1.01127 1.21342 0.94968 0.97635 1.01192 1.21350 0.94401 0.98446 1.00207 1.21162 1.00156 0.92708 1.01700 1.19951 0.94159 0.95585 0.96060 1.19265 0.94618 0.94167 0.95640 1.20899 1.29361 1.11056 0.91125 0.95478 1.25758 0.96536 0.99306 0.96780 1.70041 1.40541 1.31753 1.16603 0.86005 0.78427 0.79945 0.80614 1.18753 1.21134 1.16995 0.93737 0.88683 0.92645 0.91171 0.93337 0.89672 0.93492 0.95758 0.91578 0.91488 0.92642 0.83995 0.83225 0.84146 0.87188 0.96431 0.92254 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 11.01 113.37 1.25 1.74 16 2 O -0.41 -11.80 9.06 -148.98 -1.35 -13.15 16 3 C 0.08 2.27 3.49 71.98 0.25 2.52 16 4 C -0.01 -0.51 0.58 -52.93 -0.03 -0.54 16 5 C -0.14 -6.19 7.08 71.98 0.51 -5.68 16 6 C -0.14 -4.62 8.15 71.98 0.59 -4.03 16 7 C -0.09 -3.16 4.71 -19.86 -0.09 -3.25 16 8 C -0.13 -3.83 9.00 22.27 0.20 -3.63 16 9 C -0.13 -3.64 10.05 22.27 0.22 -3.42 16 10 C -0.13 -3.86 10.05 22.27 0.22 -3.63 16 11 C -0.14 -5.34 9.73 22.27 0.22 -5.13 16 12 C -0.06 -2.42 4.88 -19.87 -0.10 -2.52 16 13 C 0.00 -0.03 3.15 29.10 0.09 0.07 16 14 C -0.49 -27.58 7.06 25.60 0.18 -27.39 16 15 H 0.03 1.74 7.98 -2.91 -0.02 1.72 16 16 C 0.01 0.75 5.34 84.66 0.45 1.20 16 17 N -0.95 -59.35 13.96 21.45 0.30 -59.05 16 18 Si 0.93 43.90 27.47 68.60 1.88 45.79 16 19 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 21 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 22 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.07 1.64 7.17 -2.39 -0.02 1.62 16 26 H 0.05 1.36 7.85 -2.39 -0.02 1.35 16 27 H 0.08 4.15 3.37 -2.39 -0.01 4.14 16 28 H 0.05 1.93 7.33 -2.39 -0.02 1.91 16 29 H 0.02 1.12 8.05 -2.39 -0.02 1.10 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 2.10 7.52 -2.38 -0.02 2.09 16 32 H 0.05 2.00 5.15 -2.39 -0.01 1.99 16 33 H 0.14 3.32 5.92 -2.91 -0.02 3.30 16 34 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 35 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 36 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 37 H 0.02 0.83 7.19 -2.39 -0.02 0.82 16 38 H 0.06 2.72 2.08 -2.39 0.00 2.71 16 39 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -66.96 300.18 5.77 -61.19 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.97 Total: 18.93 kcal Atomic # 6 Polarization: -57.67 SS G_CDS: 3.96 Total: -53.70 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: 0.30 Total: -59.05 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -1.35 Total: -13.15 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.88 Total: 45.79 kcal Total: -66.96 5.77 -61.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260119153.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.629 kcal (2) G-P(sol) polarization free energy of solvation -66.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds