Wall clock time and date at job start Mon Mar 30 2020 06:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00201 * 2 1 4 4 H 1.48502 * 109.47295 * 270.00387 * 3 2 1 5 5 H 1.48497 * 109.46865 * 30.00492 * 3 2 1 6 6 H 1.48496 * 109.47011 * 150.00534 * 3 2 1 7 7 C 1.37885 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00012 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99600 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46805 * 185.21615 * 9 7 2 11 11 H 1.09004 * 109.45192 * 301.83792 * 10 9 7 12 12 C 1.53035 * 109.46230 * 61.80806 * 10 9 7 13 13 C 1.53113 * 109.27869 * 179.19521 * 12 10 9 14 14 C 1.53119 * 109.16307 * 302.34514 * 13 12 10 15 15 C 1.53042 * 109.27672 * 57.65460 * 14 13 12 16 16 N 1.46840 * 109.46007 * 181.86175 * 10 9 7 17 17 C 1.46898 * 111.00355 * 54.14496 * 16 10 9 18 18 C 1.50701 * 109.47457 * 189.66169 * 17 16 10 19 19 C 1.40890 * 126.28865 * 89.99699 * 18 17 16 20 20 C 1.34848 * 107.41550 * 179.97438 * 19 18 17 21 21 N 1.36337 * 108.21844 * 0.02562 * 20 19 18 22 22 H 0.97001 * 125.63543 * 179.97438 * 21 20 19 23 23 C 1.34847 * 126.29416 * 269.69162 * 18 17 16 24 24 H 0.96998 * 119.99927 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47007 * 65.21687 * 9 7 2 26 26 H 1.08997 * 109.47235 * 305.21596 * 9 7 2 27 27 H 1.09000 * 109.50304 * 59.25153 * 12 10 9 28 28 H 1.09003 * 109.53826 * 299.15777 * 12 10 9 29 29 H 1.09001 * 109.52538 * 182.43927 * 13 12 10 30 30 H 1.09007 * 109.57792 * 62.28316 * 13 12 10 31 31 H 1.09002 * 109.50331 * 297.71898 * 14 13 12 32 32 H 1.08994 * 109.54003 * 177.61180 * 14 13 12 33 33 H 1.08999 * 109.46301 * 180.81079 * 15 14 13 34 34 H 1.08993 * 109.45449 * 60.82849 * 15 14 13 35 35 H 1.08995 * 109.47010 * 309.66450 * 17 16 10 36 36 H 1.08999 * 109.47127 * 69.66314 * 17 16 10 37 37 H 1.08004 * 126.29453 * 359.95164 * 19 18 17 38 38 H 1.08007 * 125.88803 * 180.02562 * 20 19 18 39 39 H 1.08002 * 125.88701 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6525 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6307 -0.1328 11 1 3.6316 -3.2310 0.6893 12 6 3.5482 -3.2198 -1.4636 13 6 4.0775 -4.6500 -1.6000 14 6 5.6054 -4.6320 -1.5022 15 6 6.0191 -4.0019 -0.1703 16 7 5.4892 -2.6347 -0.0886 17 6 5.9816 -1.9504 1.1144 18 6 7.4736 -1.7645 1.0114 19 6 8.1391 -0.6576 0.4486 20 6 9.4638 -0.8856 0.5563 21 7 9.6404 -2.0930 1.1644 22 1 10.4954 -2.5043 1.3667 23 6 8.4169 -2.6244 1.4462 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.7635 0.9319 26 1 3.8745 -0.6013 -0.8407 27 1 3.9262 -2.6118 -2.2856 28 1 2.4586 -3.2308 -1.4904 29 1 3.7791 -5.0583 -2.5656 30 1 3.6686 -5.2686 -0.8009 31 1 6.0158 -4.0462 -2.3248 32 1 5.9862 -5.6518 -1.5561 33 1 7.1067 -3.9744 -0.1037 34 1 5.6197 -4.5958 0.6518 35 1 5.4994 -0.9768 1.2015 36 1 5.7501 -2.5506 1.9943 37 1 7.6739 0.2134 0.0110 38 1 10.2494 -0.2256 0.2189 39 1 8.2346 -3.5720 1.9313 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260288844.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:16 Heat of formation + Delta-G solvation = 40.962169 kcal Electronic energy + Delta-G solvation = -18509.182807 eV Core-core repulsion = 15837.967713 eV Total energy + Delta-G solvation = -2671.215094 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.91940 -38.55311 -33.61986 -33.28664 -31.32633 -30.54270 -28.76817 -27.51777 -25.57526 -23.24470 -22.23101 -20.65813 -20.09884 -19.07294 -18.86945 -17.80977 -16.82073 -15.26385 -14.52257 -14.08711 -14.02881 -13.77886 -13.60511 -13.46341 -13.24179 -12.91792 -12.57367 -12.51294 -12.19705 -11.60882 -11.50648 -11.27076 -10.95075 -10.74071 -10.55791 -10.27317 -9.91107 -9.85861 -9.60240 -9.28089 -9.01456 -8.49834 -8.42757 -7.97814 -7.55931 -5.97422 -3.94059 2.40689 3.16993 3.38331 3.45219 3.45586 3.50946 4.52959 4.69403 5.22571 5.26976 5.34508 5.35439 5.39254 5.47438 5.61710 5.63921 5.84763 5.97855 6.01342 6.10115 6.18956 6.25984 6.33264 6.37701 6.46125 6.49391 6.53809 6.65289 6.84058 6.96968 7.15004 7.16983 7.26772 7.32135 7.47669 7.69313 7.75396 7.86847 8.01751 8.61605 9.07403 9.65831 11.15810 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.007445 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.167280 B = 3760.082876 C = 4912.627191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.073 0.927 9 C -0.007 4.007 10 C 0.101 3.899 11 H 0.030 0.970 12 C -0.100 4.100 13 C -0.123 4.123 14 C -0.113 4.113 15 C 0.057 3.943 16 N -0.530 5.530 17 C 0.117 3.883 18 C -0.141 4.141 19 C -0.177 4.177 20 C -0.028 4.028 21 N -0.565 5.565 22 H 0.409 0.591 23 C -0.022 4.022 24 H 0.262 0.738 25 H 0.017 0.983 26 H 0.021 0.979 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.021 0.979 35 H 0.092 0.908 36 H 0.029 0.971 37 H 0.134 0.866 38 H 0.158 0.842 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.350 -6.481 0.923 19.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.552 4.552 8 H 0.091 0.909 9 C -0.044 4.044 10 C -0.006 4.006 11 H 0.048 0.952 12 C -0.138 4.138 13 C -0.161 4.161 14 C -0.151 4.151 15 C -0.071 4.071 16 N -0.255 5.255 17 C -0.010 4.010 18 C -0.148 4.148 19 C -0.202 4.202 20 C -0.158 4.158 21 N -0.160 5.160 22 H 0.245 0.755 23 C -0.153 4.153 24 H 0.071 0.929 25 H 0.035 0.965 26 H 0.040 0.960 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.110 0.890 36 H 0.047 0.953 37 H 0.152 0.848 38 H 0.176 0.824 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 18.479 -6.171 0.544 19.490 hybrid contribution 0.465 0.283 0.764 0.938 sum 18.944 -5.888 1.308 19.881 Atomic orbital electron populations 1.69914 1.06283 1.26761 1.51500 1.24984 0.94664 0.99042 0.94664 0.86801 0.80404 0.83710 0.78543 1.20313 1.21655 1.18920 1.21095 0.89308 0.94368 1.50420 0.90939 1.19706 0.96658 0.91505 0.96567 1.21564 0.83892 0.98924 0.96229 0.95209 1.21524 1.01285 0.93554 0.97417 1.21651 0.95207 0.98504 1.00696 1.21550 0.96481 0.99038 0.98014 1.22033 0.99515 0.89311 0.96228 1.61953 1.09898 1.15392 1.38241 1.20512 0.89672 1.00287 0.90566 1.19493 0.94732 0.95877 1.04732 1.20870 0.92391 1.00579 1.06374 1.21758 0.98039 0.89697 1.06276 1.41879 1.07792 1.17512 1.48840 0.75522 1.21619 0.83849 1.00724 1.09101 0.92857 0.96530 0.96016 0.91987 0.90330 0.92692 0.92904 0.91581 0.92818 0.91291 0.96117 0.88985 0.95289 0.84821 0.82412 0.82646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.04 13.96 55.43 0.77 -27.27 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 22.15 27.37 -169.99 -4.65 17.50 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.26 -6.45 6.69 56.52 0.38 -6.07 16 7 C -0.51 -14.56 8.84 -34.44 -0.30 -14.86 16 8 H 0.07 2.20 7.29 -52.49 -0.38 1.81 16 9 C -0.01 -0.17 3.22 -27.88 -0.09 -0.26 16 10 C 0.10 2.11 1.90 -67.72 -0.13 1.98 16 11 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 12 C -0.10 -1.96 5.13 -26.65 -0.14 -2.10 16 13 C -0.12 -1.96 6.00 -26.61 -0.16 -2.12 16 14 C -0.11 -1.65 6.09 -26.65 -0.16 -1.81 16 15 C 0.06 0.89 5.26 -3.83 -0.02 0.87 16 16 N -0.53 -9.70 4.49 -228.12 -1.02 -10.73 16 17 C 0.12 2.06 5.18 -4.98 -0.03 2.03 16 18 C -0.14 -2.17 5.01 -104.82 -0.52 -2.69 16 19 C -0.18 -2.62 10.81 -39.78 -0.43 -3.05 16 20 C -0.03 -0.32 11.94 -16.75 -0.20 -0.52 16 21 N -0.56 -5.80 6.07 -12.85 -0.08 -5.88 16 22 H 0.41 2.71 8.96 -40.82 -0.37 2.34 16 23 C -0.02 -0.27 10.34 -16.75 -0.17 -0.45 16 24 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.02 0.41 5.43 -51.93 -0.28 0.13 16 26 H 0.02 0.54 7.28 -51.93 -0.38 0.16 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.08 1.69 6.87 -51.93 -0.36 1.34 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.00 5.99 -51.93 -0.31 0.69 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 1.80 5.63 -51.93 -0.29 1.50 16 36 H 0.03 0.49 8.13 -51.93 -0.42 0.07 16 37 H 0.13 2.01 8.06 -52.48 -0.42 1.58 16 38 H 0.16 1.35 8.06 -52.48 -0.42 0.93 16 39 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 303.06 15.07 4.57 4.57 Total: -1.00 -31.72 303.06 -9.04 -40.77 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.18 Total: 2.14 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -2.45 Total: -21.10 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.33 Total: -43.87 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.65 Total: 17.50 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.72 -9.04 -40.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260288844.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.730 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds