Wall clock time and date at job start Mon Mar 30 2020 06:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00201 * 2 1 4 4 H 1.48502 * 109.47295 * 270.00387 * 3 2 1 5 5 H 1.48497 * 109.46865 * 30.00492 * 3 2 1 6 6 H 1.48496 * 109.47011 * 150.00534 * 3 2 1 7 7 C 1.37885 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00012 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99600 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46805 * 185.21615 * 9 7 2 11 11 H 1.09004 * 109.45192 * 301.83792 * 10 9 7 12 12 C 1.53035 * 109.46230 * 61.80806 * 10 9 7 13 13 C 1.53113 * 109.27869 * 179.19521 * 12 10 9 14 14 C 1.53119 * 109.16307 * 302.34514 * 13 12 10 15 15 C 1.53042 * 109.27672 * 57.65460 * 14 13 12 16 16 N 1.46840 * 109.46007 * 181.86175 * 10 9 7 17 17 C 1.46898 * 111.00355 * 54.14496 * 16 10 9 18 18 C 1.50701 * 109.47457 * 189.66169 * 17 16 10 19 19 C 1.40890 * 126.28865 * 89.99699 * 18 17 16 20 20 C 1.34848 * 107.41550 * 179.97438 * 19 18 17 21 21 N 1.36337 * 108.21844 * 0.02562 * 20 19 18 22 22 H 0.97001 * 125.63543 * 179.97438 * 21 20 19 23 23 C 1.34847 * 126.29416 * 269.69162 * 18 17 16 24 24 H 0.96998 * 119.99927 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47007 * 65.21687 * 9 7 2 26 26 H 1.08997 * 109.47235 * 305.21596 * 9 7 2 27 27 H 1.09000 * 109.50304 * 59.25153 * 12 10 9 28 28 H 1.09003 * 109.53826 * 299.15777 * 12 10 9 29 29 H 1.09001 * 109.52538 * 182.43927 * 13 12 10 30 30 H 1.09007 * 109.57792 * 62.28316 * 13 12 10 31 31 H 1.09002 * 109.50331 * 297.71898 * 14 13 12 32 32 H 1.08994 * 109.54003 * 177.61180 * 14 13 12 33 33 H 1.08999 * 109.46301 * 180.81079 * 15 14 13 34 34 H 1.08993 * 109.45449 * 60.82849 * 15 14 13 35 35 H 1.08995 * 109.47010 * 309.66450 * 17 16 10 36 36 H 1.08999 * 109.47127 * 69.66314 * 17 16 10 37 37 H 1.08004 * 126.29453 * 359.95164 * 19 18 17 38 38 H 1.08007 * 125.88803 * 180.02562 * 20 19 18 39 39 H 1.08002 * 125.88701 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6525 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6307 -0.1328 11 1 3.6316 -3.2310 0.6893 12 6 3.5482 -3.2198 -1.4636 13 6 4.0775 -4.6500 -1.6000 14 6 5.6054 -4.6320 -1.5022 15 6 6.0191 -4.0019 -0.1703 16 7 5.4892 -2.6347 -0.0886 17 6 5.9816 -1.9504 1.1144 18 6 7.4736 -1.7645 1.0114 19 6 8.1391 -0.6576 0.4486 20 6 9.4638 -0.8856 0.5563 21 7 9.6404 -2.0930 1.1644 22 1 10.4954 -2.5043 1.3667 23 6 8.4169 -2.6244 1.4462 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.7635 0.9319 26 1 3.8745 -0.6013 -0.8407 27 1 3.9262 -2.6118 -2.2856 28 1 2.4586 -3.2308 -1.4904 29 1 3.7791 -5.0583 -2.5656 30 1 3.6686 -5.2686 -0.8009 31 1 6.0158 -4.0462 -2.3248 32 1 5.9862 -5.6518 -1.5561 33 1 7.1067 -3.9744 -0.1037 34 1 5.6197 -4.5958 0.6518 35 1 5.4994 -0.9768 1.2015 36 1 5.7501 -2.5506 1.9943 37 1 7.6739 0.2134 0.0110 38 1 10.2494 -0.2256 0.2189 39 1 8.2346 -3.5720 1.9313 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260288844.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:16 Heat of formation + Delta-G solvation = 20.197836 kcal Electronic energy + Delta-G solvation = -18510.083216 eV Core-core repulsion = 15837.967713 eV Total energy + Delta-G solvation = -2672.115503 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.89914 -40.00395 -35.32290 -34.91431 -33.19782 -31.66481 -29.79515 -29.32504 -26.86558 -25.11569 -23.61599 -21.85538 -21.46613 -20.40962 -20.10308 -19.00964 -18.77144 -16.72941 -16.42458 -15.59927 -15.34907 -15.10012 -14.89862 -14.82508 -14.56666 -14.38244 -14.09750 -13.80727 -13.51079 -13.31715 -13.17000 -12.59102 -12.52353 -12.26143 -12.20312 -11.86030 -11.75426 -11.49786 -11.44935 -10.98031 -10.85550 -10.67480 -9.52349 -9.10818 -8.85388 -8.26966 -6.28436 1.35500 1.36133 1.46910 1.49466 2.07435 2.37311 2.64622 3.08312 3.30430 4.02719 4.07614 4.09951 4.22310 4.35235 4.43990 4.51058 4.54461 4.64774 4.68106 4.74638 4.81974 4.90445 5.03122 5.06593 5.14401 5.16980 5.21529 5.34837 5.35583 5.41808 5.51273 5.58299 5.60770 5.70936 6.10146 6.23912 6.28448 6.43555 6.47167 6.77899 6.94954 7.34895 8.89459 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.007445 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.167280 B = 3760.082876 C = 4912.627191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.010 3.990 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.254 1.254 7 C -0.517 4.517 8 H 0.038 0.962 9 C 0.002 3.998 10 C 0.109 3.891 11 H 0.013 0.987 12 C -0.098 4.098 13 C -0.117 4.117 14 C -0.107 4.107 15 C 0.057 3.943 16 N -0.535 5.535 17 C 0.121 3.879 18 C -0.175 4.175 19 C -0.219 4.219 20 C -0.007 4.007 21 N -0.547 5.547 22 H 0.431 0.569 23 C -0.009 4.009 24 H 0.265 0.735 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.024 0.976 35 H 0.061 0.939 36 H 0.029 0.971 37 H 0.117 0.883 38 H 0.192 0.808 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.981 -7.220 0.875 23.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.187 4.187 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.177 1.177 7 C -0.555 4.555 8 H 0.056 0.944 9 C -0.036 4.036 10 C 0.001 3.999 11 H 0.031 0.969 12 C -0.136 4.136 13 C -0.154 4.154 14 C -0.145 4.145 15 C -0.070 4.070 16 N -0.260 5.260 17 C -0.006 4.006 18 C -0.182 4.182 19 C -0.244 4.244 20 C -0.139 4.139 21 N -0.143 5.143 22 H 0.270 0.730 23 C -0.142 4.142 24 H 0.074 0.926 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.135 0.865 38 H 0.209 0.791 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 22.154 -6.935 0.503 23.220 hybrid contribution -0.664 0.459 0.800 1.136 sum 21.490 -6.476 1.303 22.483 Atomic orbital electron populations 1.70049 1.08020 1.27937 1.53024 1.25856 0.95487 1.02956 0.94399 0.85760 0.79410 0.79036 0.79083 1.19391 1.20840 1.17738 1.21343 0.91433 0.93121 1.49647 0.94421 1.19570 0.93907 0.94103 0.96018 1.21305 0.86102 0.96198 0.96307 0.96861 1.21431 0.99390 0.96376 0.96399 1.21600 0.96521 0.95480 1.01823 1.21549 0.94921 1.00865 0.97178 1.22141 1.00400 0.87511 0.96968 1.61949 1.07566 1.17555 1.38916 1.20368 0.91527 0.98505 0.90241 1.19360 0.93649 0.97641 1.07541 1.20948 0.94167 1.00701 1.08622 1.22134 0.97509 0.89955 1.04258 1.41887 1.08254 1.16854 1.47326 0.72953 1.21806 0.83868 1.00791 1.07719 0.92581 0.96671 0.96671 0.92771 0.93472 0.90865 0.92708 0.91932 0.89407 0.89475 0.95800 0.92047 0.95240 0.86451 0.79082 0.80385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 2 C 0.01 0.59 5.47 84.66 0.46 1.05 16 3 Si 0.94 46.61 27.37 68.60 1.88 48.49 16 4 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.25 -11.97 6.69 99.48 0.67 -11.30 16 7 C -0.52 -30.69 8.84 25.60 0.23 -30.47 16 8 H 0.04 2.43 7.29 -2.92 -0.02 2.41 16 9 C 0.00 0.08 3.22 29.85 0.10 0.18 16 10 C 0.11 4.67 1.90 44.94 0.09 4.75 16 11 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 12 C -0.10 -3.94 5.13 30.64 0.16 -3.79 16 13 C -0.12 -3.57 6.00 30.67 0.18 -3.38 16 14 C -0.11 -2.83 6.09 30.65 0.19 -2.65 16 15 C 0.06 1.65 5.26 86.33 0.45 2.11 16 16 N -0.53 -19.42 4.49 -875.64 -3.93 -23.35 16 17 C 0.12 4.26 5.18 85.56 0.44 4.71 16 18 C -0.17 -5.13 5.01 -19.99 -0.10 -5.23 16 19 C -0.22 -6.23 10.81 22.14 0.24 -5.99 16 20 C -0.01 -0.14 11.94 83.21 0.99 0.85 16 21 N -0.55 -8.97 6.07 -194.57 -1.18 -10.15 16 22 H 0.43 3.59 8.96 -92.71 -0.83 2.75 16 23 C -0.01 -0.20 10.34 83.21 0.86 0.66 16 24 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 25 H 0.02 0.77 5.43 -2.39 -0.01 0.76 16 26 H 0.01 0.77 7.28 -2.39 -0.02 0.75 16 27 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.05 2.15 6.87 -2.39 -0.02 2.13 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.09 2.23 5.99 -2.39 -0.01 2.21 16 34 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 2.48 5.63 -2.39 -0.01 2.47 16 36 H 0.03 1.00 8.13 -2.39 -0.02 0.98 16 37 H 0.12 3.59 8.06 -2.91 -0.02 3.56 16 38 H 0.19 2.42 8.06 -2.91 -0.02 2.40 16 39 H 0.18 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -71.50 303.06 1.51 -69.99 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.16 Total: 12.71 kcal Atomic # 6 Polarization: -41.50 SS G_CDS: 4.29 Total: -37.21 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -4.81 Total: -93.98 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.88 Total: 48.49 kcal Total: -71.50 1.51 -69.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260288844.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.184 kcal (2) G-P(sol) polarization free energy of solvation -71.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds