Wall clock time and date at job start Mon Mar 30 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99924 * 2 1 4 4 H 1.09004 * 109.47054 * 29.99797 * 3 2 1 5 5 C 1.53002 * 109.47079 * 270.00099 * 3 2 1 6 6 C 1.52997 * 109.47264 * 150.00012 * 3 2 1 7 7 C 1.50708 * 109.46993 * 294.99926 * 6 3 2 8 8 C 1.38232 * 119.99978 * 269.72797 * 7 6 3 9 9 C 1.38235 * 120.00053 * 179.74469 * 8 7 6 10 10 C 1.38235 * 119.99871 * 0.55045 * 9 8 7 11 11 C 1.50701 * 120.00170 * 179.72532 * 10 9 8 12 12 C 1.53003 * 109.47029 * 269.97756 * 11 10 9 13 13 C 1.50692 * 109.46970 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00571 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00190 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99824 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00625 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47329 * 89.99484 * 17 15 13 19 19 H 1.48496 * 109.47493 * 210.00127 * 17 15 13 20 20 H 1.48508 * 109.46703 * 330.00180 * 17 15 13 21 21 C 1.38236 * 119.99890 * 359.70289 * 10 9 8 22 22 C 1.38234 * 119.99996 * 90.00123 * 7 6 3 23 23 H 1.08998 * 109.46882 * 299.99937 * 1 2 3 24 24 H 1.08995 * 109.47077 * 60.00255 * 1 2 3 25 25 H 1.09006 * 109.46826 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46930 * 299.99773 * 5 3 2 27 27 H 1.09004 * 109.47059 * 59.99375 * 5 3 2 28 28 H 1.08992 * 109.47060 * 179.97438 * 5 3 2 29 29 H 1.08998 * 109.47192 * 54.99822 * 6 3 2 30 30 H 1.09000 * 109.46875 * 175.00224 * 6 3 2 31 31 H 1.08007 * 120.00322 * 359.97438 * 8 7 6 32 32 H 1.07999 * 120.00396 * 180.27388 * 9 8 7 33 33 H 1.08998 * 109.46892 * 29.97358 * 11 10 9 34 34 H 1.09001 * 109.46812 * 149.98002 * 11 10 9 35 35 H 1.08998 * 109.46870 * 300.00344 * 12 11 10 36 36 H 1.09002 * 109.46851 * 59.99960 * 12 11 10 37 37 H 0.97000 * 120.00237 * 180.02562 * 16 15 13 38 38 H 1.08002 * 120.00030 * 179.97438 * 21 10 9 39 39 H 1.07999 * 119.99789 * 0.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3589 1.2634 0.7212 7 6 3.1416 0.9237 2.1734 8 6 2.9463 1.9330 3.0975 9 6 2.7417 1.6212 4.4286 10 6 2.7437 0.3007 4.8374 11 6 2.5269 -0.0389 6.2895 12 6 3.8758 -0.0812 7.0104 13 6 3.6590 -0.4214 8.4623 14 1 2.6591 -0.5902 8.8340 15 6 4.7370 -0.5163 9.3166 16 7 5.9546 -0.3103 8.8642 17 14 4.4683 -0.9373 11.1165 18 1 4.5157 -2.4111 11.2926 19 1 5.5332 -0.3063 11.9369 20 1 3.1422 -0.4293 11.5510 21 6 2.9442 -0.7083 3.9141 22 6 3.1431 -0.3968 2.5820 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 2.8830 1.0775 -1.9563 27 1 1.2568 1.8014 -1.9564 28 1 2.6605 2.7673 -1.4425 29 1 3.9931 0.5053 0.2618 30 1 3.8426 2.2371 0.6443 31 1 2.9499 2.9650 2.7790 32 1 2.5848 2.4095 5.1500 33 1 1.8929 0.7193 6.7492 34 1 2.0431 -1.0127 6.3666 35 1 4.5098 -0.8393 6.5506 36 1 4.3596 0.8925 6.9332 37 1 6.7132 -0.3773 9.4651 38 1 2.9462 -1.7400 4.2335 39 1 3.3005 -1.1851 1.8608 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260307014.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:36 Heat of formation + Delta-G solvation = -52.719925 kcal Electronic energy + Delta-G solvation = -17396.612825 eV Core-core repulsion = 14689.042619 eV Total energy + Delta-G solvation = -2707.570206 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.33225 -38.07304 -34.55582 -33.10326 -31.68990 -30.43289 -29.42970 -26.97594 -26.35703 -24.20144 -22.22991 -21.84645 -20.97519 -19.77250 -16.86029 -16.40384 -15.90929 -15.41889 -14.91409 -14.79550 -14.49143 -14.43688 -13.34333 -13.09127 -12.98096 -12.84305 -12.58511 -12.49123 -12.18402 -11.91406 -11.76592 -11.54956 -11.10596 -10.94196 -10.89110 -10.62161 -10.53174 -10.41471 -9.77111 -9.71339 -9.53714 -9.06382 -8.43445 -8.31547 -7.86824 -5.97280 -4.00356 1.84293 1.90782 3.33428 3.39472 3.42874 3.67475 4.22546 4.48247 4.72423 4.83822 5.05215 5.16814 5.21902 5.24181 5.36664 5.38026 5.45378 5.47814 5.53401 5.60250 5.65024 5.68692 5.85891 5.97265 6.05593 6.08882 6.30899 6.49389 6.61854 6.71652 6.93015 6.99401 7.06974 7.14543 7.25839 7.54218 7.71254 7.86489 8.03173 8.43712 9.06831 9.63448 11.13744 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.051795 B = 0.003692 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.463407 B = 7583.024311 C = 7767.176092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.378 6.378 3 C 0.090 3.910 4 H 0.060 0.940 5 C -0.175 4.175 6 C -0.073 4.073 7 C -0.105 4.105 8 C -0.120 4.120 9 C -0.123 4.123 10 C -0.058 4.058 11 C -0.080 4.080 12 C 0.030 3.970 13 C -0.522 4.522 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.122 4.122 22 C -0.099 4.099 23 H 0.041 0.959 24 H 0.036 0.964 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.260 0.740 38 H 0.118 0.882 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.648 3.960 -18.950 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.297 6.297 3 C 0.032 3.968 4 H 0.078 0.922 5 C -0.232 4.232 6 C -0.110 4.110 7 C -0.105 4.105 8 C -0.138 4.138 9 C -0.141 4.141 10 C -0.058 4.058 11 C -0.118 4.118 12 C -0.007 4.007 13 C -0.560 4.560 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.141 4.141 22 C -0.117 4.117 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.136 0.864 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.351 3.803 -18.894 21.005 hybrid contribution -0.204 0.012 1.032 1.052 sum -8.555 3.815 -17.863 20.170 Atomic orbital electron populations 1.22735 0.81513 1.02547 0.99593 1.87934 1.19233 1.27562 1.94981 1.22132 0.94954 0.84939 0.94784 0.92165 1.22305 1.02185 1.01651 0.97079 1.20654 0.95744 1.02555 0.92082 1.19542 1.02982 0.93611 0.94413 1.20900 1.01468 0.98112 0.93304 1.21015 1.01371 0.96287 0.95403 1.20360 0.95571 0.92937 0.96888 1.20835 1.01392 1.00482 0.89060 1.19065 0.90073 0.97449 0.94100 1.21269 0.93009 1.47554 0.94193 0.92627 1.25030 0.95226 0.95459 0.98738 1.69978 0.98181 1.49787 1.35416 0.86595 0.77836 0.78510 0.85063 1.20662 1.21235 1.19869 1.21073 1.00935 0.99241 0.92801 1.20909 0.99665 0.95586 0.95512 0.94034 0.94567 0.89851 0.91736 0.92655 0.91605 0.90447 0.90050 0.87014 0.86423 0.92392 0.92356 0.96451 0.96471 0.93006 0.86398 0.86639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 101.05 1.09 1.40 16 2 O -0.38 -4.52 9.84 -35.23 -0.35 -4.87 16 3 C 0.09 0.93 2.71 -26.73 -0.07 0.86 16 4 H 0.06 0.62 7.79 -51.93 -0.40 0.21 16 5 C -0.17 -1.42 9.53 37.16 0.35 -1.07 16 6 C -0.07 -0.82 5.06 -27.88 -0.14 -0.97 16 7 C -0.11 -1.53 4.97 -104.62 -0.52 -2.05 16 8 C -0.12 -1.80 9.70 -39.58 -0.38 -2.19 16 9 C -0.12 -2.14 9.70 -39.58 -0.38 -2.52 16 10 C -0.06 -1.11 5.13 -104.62 -0.54 -1.64 16 11 C -0.08 -1.73 5.28 -27.88 -0.15 -1.88 16 12 C 0.03 0.80 4.95 -27.89 -0.14 0.66 16 13 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -27.37 13.29 55.43 0.74 -26.63 16 17 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.12 -2.18 9.70 -39.58 -0.38 -2.57 16 22 C -0.10 -1.56 9.40 -39.58 -0.37 -1.93 16 23 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 24 H 0.04 0.28 7.87 -51.93 -0.41 -0.13 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.42 7.87 -51.93 -0.41 0.01 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 30 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 31 H 0.11 1.39 8.06 -52.48 -0.42 0.96 16 32 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.06 1.20 8.09 -51.93 -0.42 0.78 16 34 H 0.06 1.21 8.09 -51.93 -0.42 0.80 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.12 2.02 8.06 -52.49 -0.42 1.59 16 39 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 328.46 15.07 4.95 4.95 Total: -1.00 -31.44 328.46 -8.39 -39.83 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -6.67 Total: -2.47 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: -2.04 Total: -27.68 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.74 Total: -26.63 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.35 Total: -4.87 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.44 -8.39 -39.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260307014.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.891 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds