Wall clock time and date at job start Mon Mar 30 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99924 * 2 1 4 4 H 1.09004 * 109.47054 * 29.99797 * 3 2 1 5 5 C 1.53002 * 109.47079 * 270.00099 * 3 2 1 6 6 C 1.52997 * 109.47264 * 150.00012 * 3 2 1 7 7 C 1.50708 * 109.46993 * 294.99926 * 6 3 2 8 8 C 1.38232 * 119.99978 * 269.72797 * 7 6 3 9 9 C 1.38235 * 120.00053 * 179.74469 * 8 7 6 10 10 C 1.38235 * 119.99871 * 0.55045 * 9 8 7 11 11 C 1.50701 * 120.00170 * 179.72532 * 10 9 8 12 12 C 1.53003 * 109.47029 * 269.97756 * 11 10 9 13 13 C 1.50692 * 109.46970 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00571 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00190 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99824 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00625 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47329 * 89.99484 * 17 15 13 19 19 H 1.48496 * 109.47493 * 210.00127 * 17 15 13 20 20 H 1.48508 * 109.46703 * 330.00180 * 17 15 13 21 21 C 1.38236 * 119.99890 * 359.70289 * 10 9 8 22 22 C 1.38234 * 119.99996 * 90.00123 * 7 6 3 23 23 H 1.08998 * 109.46882 * 299.99937 * 1 2 3 24 24 H 1.08995 * 109.47077 * 60.00255 * 1 2 3 25 25 H 1.09006 * 109.46826 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46930 * 299.99773 * 5 3 2 27 27 H 1.09004 * 109.47059 * 59.99375 * 5 3 2 28 28 H 1.08992 * 109.47060 * 179.97438 * 5 3 2 29 29 H 1.08998 * 109.47192 * 54.99822 * 6 3 2 30 30 H 1.09000 * 109.46875 * 175.00224 * 6 3 2 31 31 H 1.08007 * 120.00322 * 359.97438 * 8 7 6 32 32 H 1.07999 * 120.00396 * 180.27388 * 9 8 7 33 33 H 1.08998 * 109.46892 * 29.97358 * 11 10 9 34 34 H 1.09001 * 109.46812 * 149.98002 * 11 10 9 35 35 H 1.08998 * 109.46870 * 300.00344 * 12 11 10 36 36 H 1.09002 * 109.46851 * 59.99960 * 12 11 10 37 37 H 0.97000 * 120.00237 * 180.02562 * 16 15 13 38 38 H 1.08002 * 120.00030 * 179.97438 * 21 10 9 39 39 H 1.07999 * 119.99789 * 0.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3589 1.2634 0.7212 7 6 3.1416 0.9237 2.1734 8 6 2.9463 1.9330 3.0975 9 6 2.7417 1.6212 4.4286 10 6 2.7437 0.3007 4.8374 11 6 2.5269 -0.0389 6.2895 12 6 3.8758 -0.0812 7.0104 13 6 3.6590 -0.4214 8.4623 14 1 2.6591 -0.5902 8.8340 15 6 4.7370 -0.5163 9.3166 16 7 5.9546 -0.3103 8.8642 17 14 4.4683 -0.9373 11.1165 18 1 4.5157 -2.4111 11.2926 19 1 5.5332 -0.3063 11.9369 20 1 3.1422 -0.4293 11.5510 21 6 2.9442 -0.7083 3.9141 22 6 3.1431 -0.3968 2.5820 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 2.8830 1.0775 -1.9563 27 1 1.2568 1.8014 -1.9564 28 1 2.6605 2.7673 -1.4425 29 1 3.9931 0.5053 0.2618 30 1 3.8426 2.2371 0.6443 31 1 2.9499 2.9650 2.7790 32 1 2.5848 2.4095 5.1500 33 1 1.8929 0.7193 6.7492 34 1 2.0431 -1.0127 6.3666 35 1 4.5098 -0.8393 6.5506 36 1 4.3596 0.8925 6.9332 37 1 6.7132 -0.3773 9.4651 38 1 2.9462 -1.7400 4.2335 39 1 3.3005 -1.1851 1.8608 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260307014.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:35 Heat of formation + Delta-G solvation = -69.317466 kcal Electronic energy + Delta-G solvation = -17397.332548 eV Core-core repulsion = 14689.042619 eV Total energy + Delta-G solvation = -2708.289929 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.51267 -39.02097 -36.18133 -34.70474 -33.14396 -31.72765 -30.85837 -28.14484 -27.42233 -25.81895 -23.52238 -23.32429 -22.15805 -21.20270 -18.57300 -17.66403 -17.08034 -16.53173 -16.31113 -16.13088 -16.02187 -15.54347 -14.61219 -14.53775 -14.20321 -14.12077 -13.95110 -13.71503 -13.42155 -13.11181 -12.94036 -12.81276 -12.75749 -12.44582 -12.25150 -11.99414 -11.90992 -11.60845 -11.55632 -11.48765 -11.14476 -10.57300 -10.51171 -9.72553 -9.24185 -8.20573 -6.33351 0.53000 0.59794 1.39397 1.41340 1.52603 2.40292 2.87057 2.99582 3.11705 3.81293 3.99427 4.08613 4.18015 4.23498 4.30784 4.42542 4.44230 4.50982 4.60140 4.70843 4.71467 4.82793 4.85368 4.89228 4.92948 4.97228 5.00497 5.12589 5.27233 5.33024 5.35618 5.47362 5.59051 5.60589 5.77187 5.82649 5.95274 6.20018 6.24257 6.37518 6.83397 7.36100 8.91031 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.051795 B = 0.003692 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.463407 B = 7583.024311 C = 7767.176092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.403 6.403 3 C 0.088 3.912 4 H 0.062 0.938 5 C -0.169 4.169 6 C -0.073 4.073 7 C -0.096 4.096 8 C -0.117 4.117 9 C -0.134 4.134 10 C -0.089 4.089 11 C -0.065 4.065 12 C 0.038 3.962 13 C -0.546 4.546 14 H 0.062 0.938 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.262 1.262 21 C -0.136 4.136 22 C -0.104 4.104 23 H 0.036 0.964 24 H 0.053 0.947 25 H 0.089 0.911 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.145 0.855 32 H 0.120 0.880 33 H 0.062 0.938 34 H 0.059 0.941 35 H -0.013 1.013 36 H -0.011 1.011 37 H 0.264 0.736 38 H 0.114 0.886 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.441 4.721 -19.970 22.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.322 6.322 3 C 0.030 3.970 4 H 0.080 0.920 5 C -0.226 4.226 6 C -0.110 4.110 7 C -0.096 4.096 8 C -0.135 4.135 9 C -0.152 4.152 10 C -0.089 4.089 11 C -0.103 4.103 12 C 0.001 3.999 13 C -0.584 4.584 14 H 0.081 0.919 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.792 3.208 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.186 1.186 21 C -0.154 4.154 22 C -0.122 4.122 23 H 0.054 0.946 24 H 0.072 0.928 25 H 0.107 0.893 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.163 0.837 32 H 0.138 0.862 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.005 0.995 36 H 0.008 0.992 37 H 0.073 0.927 38 H 0.132 0.868 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.163 4.565 -19.927 22.402 hybrid contribution 0.055 -0.208 1.244 1.263 sum -9.108 4.358 -18.682 21.236 Atomic orbital electron populations 1.22843 0.80488 1.03218 1.00171 1.87899 1.20485 1.28645 1.95186 1.22203 0.94160 0.84501 0.96113 0.92009 1.22252 1.02677 1.02346 0.95352 1.20764 0.96751 1.03865 0.89580 1.19970 1.00432 0.92844 0.96316 1.21235 1.00136 0.99971 0.92156 1.21176 1.01628 0.95530 0.96891 1.20216 0.98684 0.94351 0.95630 1.20551 0.98338 1.00769 0.90626 1.18894 0.92216 0.94663 0.94096 1.21712 0.93534 1.47735 0.95398 0.91946 1.26032 0.94773 0.95022 1.04084 1.70119 0.99224 1.50644 1.37405 0.85399 0.78274 0.78559 0.78522 1.19702 1.20635 1.18564 1.21158 1.01571 0.98917 0.93778 1.21110 0.99384 0.96912 0.94748 0.94578 0.92805 0.89284 0.91977 0.92015 0.89991 0.90251 0.87737 0.83744 0.86197 0.91977 0.92240 0.99473 0.99245 0.92722 0.86764 0.85312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.82 113.37 1.23 1.73 16 2 O -0.40 -8.86 9.84 -148.98 -1.47 -10.32 16 3 C 0.09 1.58 2.71 30.59 0.08 1.66 16 4 H 0.06 1.09 7.79 -2.38 -0.02 1.07 16 5 C -0.17 -2.22 9.53 71.98 0.69 -1.54 16 6 C -0.07 -1.43 5.06 29.85 0.15 -1.28 16 7 C -0.10 -2.60 4.97 -19.86 -0.10 -2.70 16 8 C -0.12 -3.31 9.70 22.27 0.22 -3.10 16 9 C -0.13 -4.66 9.70 22.27 0.22 -4.45 16 10 C -0.09 -3.50 5.13 -19.87 -0.10 -3.60 16 11 C -0.07 -2.92 5.28 29.85 0.16 -2.76 16 12 C 0.04 2.14 4.95 29.85 0.15 2.29 16 13 C -0.55 -32.12 9.11 25.60 0.23 -31.89 16 14 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 15 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 16 N -0.93 -58.45 13.29 21.45 0.28 -58.16 16 17 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 20 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 21 C -0.14 -4.96 9.70 22.27 0.22 -4.74 16 22 C -0.10 -3.21 9.40 22.27 0.21 -3.00 16 23 H 0.04 0.64 8.08 -2.39 -0.02 0.62 16 24 H 0.05 0.71 7.87 -2.39 -0.02 0.70 16 25 H 0.09 1.37 8.14 -2.38 -0.02 1.36 16 26 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.06 0.74 7.87 -2.39 -0.02 0.72 16 28 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 1.57 8.09 -2.39 -0.02 1.55 16 30 H 0.10 1.60 8.08 -2.39 -0.02 1.58 16 31 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 32 H 0.12 3.99 8.06 -2.91 -0.02 3.97 16 33 H 0.06 2.65 8.09 -2.39 -0.02 2.63 16 34 H 0.06 2.57 8.09 -2.39 -0.02 2.55 16 35 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 36 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.11 4.09 8.06 -2.91 -0.02 4.06 16 39 H 0.13 3.59 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -68.67 328.46 5.63 -63.03 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.98 Total: 11.35 kcal Atomic # 6 Polarization: -56.81 SS G_CDS: 3.80 Total: -53.01 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.28 Total: -58.16 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -1.47 Total: -10.32 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -68.67 5.63 -63.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260307014.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.284 kcal (2) G-P(sol) polarization free energy of solvation -68.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds