Wall clock time and date at job start Mon Mar 30 2020 06:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99267 * 2 1 4 4 H 1.08992 * 109.47409 * 330.00011 * 3 2 1 5 5 C 1.53001 * 109.46849 * 90.00223 * 3 2 1 6 6 C 1.52996 * 109.46870 * 209.99795 * 3 2 1 7 7 C 1.50702 * 109.47203 * 65.00387 * 6 3 2 8 8 C 1.38234 * 119.99895 * 269.72772 * 7 6 3 9 9 C 1.38239 * 120.00062 * 180.29921 * 8 7 6 10 10 C 1.38235 * 119.99729 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99539 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.46874 * 269.97480 * 11 10 9 13 13 C 1.50700 * 109.47255 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99724 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00038 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99502 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00079 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47135 * 89.99999 * 17 15 13 19 19 H 1.48500 * 109.47008 * 210.00190 * 17 15 13 20 20 H 1.48497 * 109.47044 * 330.00087 * 17 15 13 21 21 C 1.38234 * 120.00183 * 359.97438 * 10 9 8 22 22 C 1.38230 * 119.99885 * 0.02871 * 21 10 9 23 23 H 1.08996 * 109.47601 * 60.00165 * 1 2 3 24 24 H 1.09007 * 109.46842 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47636 * 299.99463 * 1 2 3 26 26 H 1.09006 * 109.47262 * 59.99925 * 5 3 2 27 27 H 1.09005 * 109.47056 * 179.97438 * 5 3 2 28 28 H 1.09000 * 109.47167 * 299.99609 * 5 3 2 29 29 H 1.09003 * 109.47252 * 305.00565 * 6 3 2 30 30 H 1.09001 * 109.47630 * 185.00619 * 6 3 2 31 31 H 1.08001 * 120.00279 * 0.27436 * 8 7 6 32 32 H 1.07997 * 119.99831 * 179.97438 * 9 8 7 33 33 H 1.08994 * 109.47254 * 29.97472 * 11 10 9 34 34 H 1.09003 * 109.46981 * 149.98018 * 11 10 9 35 35 H 1.09001 * 109.46888 * 300.00304 * 12 11 10 36 36 H 1.08998 * 109.47432 * 59.99763 * 12 11 10 37 37 H 0.97004 * 119.99799 * 179.97438 * 16 15 13 38 38 H 1.07992 * 119.99701 * 180.02562 * 21 10 9 39 39 H 1.08000 * 120.00356 * 179.97438 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3448 1.9994 -0.5138 5 6 2.2175 1.7714 1.4425 6 6 3.3588 1.2635 -0.7212 7 6 3.1415 0.9238 -2.1733 8 6 3.1488 -0.3964 -2.5829 9 6 2.9557 -0.7077 -3.9158 10 6 2.7549 0.3014 -4.8391 11 6 2.5438 -0.0380 -6.2922 12 6 3.8951 -0.0748 -7.0088 13 6 3.6841 -0.4135 -8.4619 14 1 2.6859 -0.5859 -8.8368 15 6 4.7653 -0.5045 -9.3127 16 7 4.5811 -0.8006 -10.5807 17 14 6.4916 -0.2072 -8.6641 18 1 7.0709 -1.4904 -8.1919 19 1 7.3392 0.3489 -9.7494 20 1 6.4373 0.7564 -7.5356 21 6 2.7466 1.6216 -4.4294 22 6 2.9397 1.9327 -3.0965 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 2.8829 1.0775 1.9564 27 1 2.6612 2.7671 1.4426 28 1 1.2567 1.8014 1.9564 29 1 3.9930 0.5053 -0.2617 30 1 3.8426 2.2372 -0.6443 31 1 3.3056 -1.1848 -1.8615 32 1 2.9617 -1.7391 -4.2358 33 1 2.0639 -1.0134 -6.3715 34 1 1.9085 0.7182 -6.7533 35 1 4.3751 0.9007 -6.9294 36 1 4.5305 -0.8308 -6.5476 37 1 5.3417 -0.8643 -11.1794 38 1 2.5893 2.4098 -5.1506 39 1 2.9337 2.9642 -2.7763 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260307018.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:39 Heat of formation + Delta-G solvation = -49.320595 kcal Electronic energy + Delta-G solvation = -17465.118795 eV Core-core repulsion = 14757.695995 eV Total energy + Delta-G solvation = -2707.422800 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.43206 -38.15041 -34.67421 -33.11161 -31.80308 -30.54505 -29.75010 -27.13775 -26.54609 -24.24584 -22.34014 -21.77656 -20.86905 -19.82792 -16.91690 -16.84042 -16.01021 -15.47533 -15.02440 -14.87814 -14.58675 -14.20884 -13.40439 -13.13315 -13.11206 -12.93167 -12.76459 -12.75103 -12.18652 -12.06825 -12.01438 -11.65474 -11.29936 -11.03272 -10.95176 -10.72445 -10.60368 -10.07113 -9.81916 -9.77074 -9.65405 -9.16035 -8.55291 -8.50245 -8.00626 -6.02720 -4.00703 1.72337 1.79287 3.33354 3.40385 3.46076 3.61955 4.11612 4.47772 4.65192 4.78037 4.98541 5.12189 5.13734 5.18531 5.30128 5.31787 5.36221 5.40463 5.46356 5.52513 5.55151 5.61746 5.79306 5.88207 5.95891 5.99010 6.19552 6.37089 6.49652 6.52489 6.80997 6.87386 6.89614 7.08127 7.08992 7.32090 7.42388 7.49642 7.81175 8.55201 9.02007 9.60070 11.10700 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.042905 B = 0.004093 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.448549 B = 6839.477828 C = 7097.523807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.378 6.378 3 C 0.090 3.910 4 H 0.061 0.939 5 C -0.175 4.175 6 C -0.074 4.074 7 C -0.104 4.104 8 C -0.099 4.099 9 C -0.123 4.123 10 C -0.063 4.063 11 C -0.071 4.071 12 C -0.005 4.005 13 C -0.521 4.521 14 H 0.072 0.928 15 C 0.067 3.933 16 N -0.904 5.904 17 Si 0.878 3.122 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 C -0.123 4.123 22 C -0.120 4.120 23 H 0.041 0.959 24 H 0.083 0.917 25 H 0.036 0.964 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.016 0.984 36 H 0.012 0.988 37 H 0.263 0.737 38 H 0.119 0.881 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.522 5.195 23.308 24.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.297 6.297 3 C 0.032 3.968 4 H 0.079 0.921 5 C -0.232 4.232 6 C -0.111 4.111 7 C -0.104 4.104 8 C -0.117 4.117 9 C -0.141 4.141 10 C -0.063 4.063 11 C -0.109 4.109 12 C -0.043 4.043 13 C -0.559 4.559 14 H 0.090 0.910 15 C -0.134 4.134 16 N -0.543 5.543 17 Si 0.706 3.294 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.189 1.189 21 C -0.141 4.141 22 C -0.138 4.138 23 H 0.060 0.940 24 H 0.102 0.898 25 H 0.055 0.945 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.031 0.969 37 H 0.072 0.928 38 H 0.137 0.863 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.316 5.003 23.138 24.262 hybrid contribution 0.744 0.346 0.159 0.836 sum -4.572 5.349 23.297 24.336 Atomic orbital electron populations 1.22742 0.81433 1.02599 0.99632 1.87933 1.19298 1.27515 1.94988 1.22125 0.94891 0.84989 0.94821 0.92133 1.22306 1.02230 1.01646 0.97046 1.20663 0.95843 1.02574 0.92006 1.19573 1.02677 0.93614 0.94490 1.20932 0.99645 0.95626 0.95509 1.21103 1.00859 0.99295 0.92820 1.20381 0.95986 0.92997 0.96953 1.20636 1.00291 1.01277 0.88675 1.19541 0.92230 0.96624 0.95875 1.21165 0.95430 1.47542 0.91753 0.90964 1.25015 0.99137 0.94565 0.94719 1.69919 1.31123 1.49287 1.04008 0.86789 0.84706 0.79097 0.78826 1.20253 1.21378 1.18949 1.21041 1.01260 0.96302 0.95463 1.20918 1.01423 0.98204 0.93264 0.94017 0.89809 0.94519 0.91739 0.91606 0.92596 0.90421 0.90027 0.86534 0.86253 0.91765 0.91776 0.96527 0.96943 0.92753 0.86283 0.86915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.39 16 2 O -0.38 -4.33 9.85 -35.23 -0.35 -4.68 16 3 C 0.09 0.88 2.71 -26.73 -0.07 0.81 16 4 H 0.06 0.59 7.79 -51.93 -0.40 0.18 16 5 C -0.17 -1.34 9.53 37.16 0.35 -0.99 16 6 C -0.07 -0.78 5.06 -27.88 -0.14 -0.92 16 7 C -0.10 -1.41 4.96 -104.62 -0.52 -1.93 16 8 C -0.10 -1.47 9.41 -39.58 -0.37 -1.85 16 9 C -0.12 -2.05 9.70 -39.58 -0.38 -2.44 16 10 C -0.06 -1.14 5.13 -104.62 -0.54 -1.68 16 11 C -0.07 -1.47 5.28 -27.88 -0.15 -1.62 16 12 C -0.01 -0.13 4.02 -27.88 -0.11 -0.24 16 13 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 14 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -28.28 13.96 55.43 0.77 -27.50 16 17 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 21 C -0.12 -2.01 9.70 -39.59 -0.38 -2.39 16 22 C -0.12 -1.69 9.70 -39.59 -0.38 -2.08 16 23 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 24 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 25 H 0.04 0.27 7.87 -51.93 -0.41 -0.14 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.40 7.87 -51.93 -0.41 -0.01 16 29 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 30 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 31 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 34 H 0.06 1.29 8.09 -51.93 -0.42 0.87 16 35 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 36 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 38 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 324.88 15.07 4.90 4.90 Total: -1.00 -31.80 324.88 -8.02 -39.82 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -6.63 Total: -2.61 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: -2.04 Total: -27.51 kcal Atomic # 7 Polarization: -28.28 SS G_CDS: 0.77 Total: -27.50 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.35 Total: -4.68 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.80 -8.02 -39.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260307018.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.504 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds