Wall clock time and date at job start Mon Mar 30 2020 06:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99267 * 2 1 4 4 H 1.08992 * 109.47409 * 330.00011 * 3 2 1 5 5 C 1.53001 * 109.46849 * 90.00223 * 3 2 1 6 6 C 1.52996 * 109.46870 * 209.99795 * 3 2 1 7 7 C 1.50702 * 109.47203 * 65.00387 * 6 3 2 8 8 C 1.38234 * 119.99895 * 269.72772 * 7 6 3 9 9 C 1.38239 * 120.00062 * 180.29921 * 8 7 6 10 10 C 1.38235 * 119.99729 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99539 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.46874 * 269.97480 * 11 10 9 13 13 C 1.50700 * 109.47255 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99724 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00038 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99502 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00079 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47135 * 89.99999 * 17 15 13 19 19 H 1.48500 * 109.47008 * 210.00190 * 17 15 13 20 20 H 1.48497 * 109.47044 * 330.00087 * 17 15 13 21 21 C 1.38234 * 120.00183 * 359.97438 * 10 9 8 22 22 C 1.38230 * 119.99885 * 0.02871 * 21 10 9 23 23 H 1.08996 * 109.47601 * 60.00165 * 1 2 3 24 24 H 1.09007 * 109.46842 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47636 * 299.99463 * 1 2 3 26 26 H 1.09006 * 109.47262 * 59.99925 * 5 3 2 27 27 H 1.09005 * 109.47056 * 179.97438 * 5 3 2 28 28 H 1.09000 * 109.47167 * 299.99609 * 5 3 2 29 29 H 1.09003 * 109.47252 * 305.00565 * 6 3 2 30 30 H 1.09001 * 109.47630 * 185.00619 * 6 3 2 31 31 H 1.08001 * 120.00279 * 0.27436 * 8 7 6 32 32 H 1.07997 * 119.99831 * 179.97438 * 9 8 7 33 33 H 1.08994 * 109.47254 * 29.97472 * 11 10 9 34 34 H 1.09003 * 109.46981 * 149.98018 * 11 10 9 35 35 H 1.09001 * 109.46888 * 300.00304 * 12 11 10 36 36 H 1.08998 * 109.47432 * 59.99763 * 12 11 10 37 37 H 0.97004 * 119.99799 * 179.97438 * 16 15 13 38 38 H 1.07992 * 119.99701 * 180.02562 * 21 10 9 39 39 H 1.08000 * 120.00356 * 179.97438 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3448 1.9994 -0.5138 5 6 2.2175 1.7714 1.4425 6 6 3.3588 1.2635 -0.7212 7 6 3.1415 0.9238 -2.1733 8 6 3.1488 -0.3964 -2.5829 9 6 2.9557 -0.7077 -3.9158 10 6 2.7549 0.3014 -4.8391 11 6 2.5438 -0.0380 -6.2922 12 6 3.8951 -0.0748 -7.0088 13 6 3.6841 -0.4135 -8.4619 14 1 2.6859 -0.5859 -8.8368 15 6 4.7653 -0.5045 -9.3127 16 7 4.5811 -0.8006 -10.5807 17 14 6.4916 -0.2072 -8.6641 18 1 7.0709 -1.4904 -8.1919 19 1 7.3392 0.3489 -9.7494 20 1 6.4373 0.7564 -7.5356 21 6 2.7466 1.6216 -4.4294 22 6 2.9397 1.9327 -3.0965 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 2.8829 1.0775 1.9564 27 1 2.6612 2.7671 1.4426 28 1 1.2567 1.8014 1.9564 29 1 3.9930 0.5053 -0.2617 30 1 3.8426 2.2372 -0.6443 31 1 3.3056 -1.1848 -1.8615 32 1 2.9617 -1.7391 -4.2358 33 1 2.0639 -1.0134 -6.3715 34 1 1.9085 0.7182 -6.7533 35 1 4.3751 0.9007 -6.9294 36 1 4.5305 -0.8308 -6.5476 37 1 5.3417 -0.8643 -11.1794 38 1 2.5893 2.4098 -5.1506 39 1 2.9337 2.9642 -2.7763 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260307018.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:38 Heat of formation + Delta-G solvation = -66.786282 kcal Electronic energy + Delta-G solvation = -17465.876164 eV Core-core repulsion = 14757.695995 eV Total energy + Delta-G solvation = -2708.180169 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.52713 -39.03143 -36.20510 -34.70148 -33.30450 -31.73148 -31.10783 -28.32799 -27.44955 -25.71805 -23.52341 -23.06845 -22.11886 -21.21371 -19.01841 -17.66824 -17.07882 -16.39124 -16.33300 -16.14841 -15.99921 -15.54387 -14.82876 -14.67175 -14.28056 -14.15983 -14.01998 -13.75025 -13.45873 -13.20449 -13.00996 -12.92165 -12.74739 -12.30376 -12.11285 -12.00224 -11.81943 -11.59431 -11.58782 -11.51333 -11.27130 -10.78874 -10.51888 -9.73090 -9.26229 -8.31953 -6.36168 0.51328 0.59354 1.33707 1.34991 1.47998 2.34136 2.85983 2.98799 3.03180 3.80642 3.99243 4.07693 4.13725 4.23485 4.30007 4.41070 4.43199 4.50374 4.59609 4.68621 4.69695 4.72133 4.82327 4.88631 4.92498 4.94870 4.96807 5.08992 5.25366 5.28527 5.34484 5.40870 5.45131 5.55936 5.67567 5.77467 5.91844 6.21856 6.25533 6.36771 6.71174 7.28647 8.84862 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.042905 B = 0.004093 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.448549 B = 6839.477828 C = 7097.523807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.402 6.402 3 C 0.087 3.913 4 H 0.061 0.939 5 C -0.169 4.169 6 C -0.073 4.073 7 C -0.094 4.094 8 C -0.104 4.104 9 C -0.134 4.134 10 C -0.090 4.090 11 C -0.061 4.061 12 C 0.002 3.998 13 C -0.534 4.534 14 H 0.034 0.966 15 C 0.006 3.994 16 N -0.950 5.950 17 Si 0.949 3.051 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.251 1.251 21 C -0.133 4.133 22 C -0.117 4.117 23 H 0.036 0.964 24 H 0.088 0.912 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.129 0.871 32 H 0.117 0.883 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.017 0.983 36 H 0.013 0.987 37 H 0.267 0.733 38 H 0.122 0.878 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.400 6.545 26.355 27.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.322 6.322 3 C 0.029 3.971 4 H 0.080 0.920 5 C -0.227 4.227 6 C -0.110 4.110 7 C -0.094 4.094 8 C -0.121 4.121 9 C -0.153 4.153 10 C -0.090 4.090 11 C -0.099 4.099 12 C -0.036 4.036 13 C -0.572 4.572 14 H 0.053 0.947 15 C -0.191 4.191 16 N -0.590 5.590 17 Si 0.772 3.228 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.175 1.175 21 C -0.151 4.151 22 C -0.135 4.135 23 H 0.054 0.946 24 H 0.107 0.893 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.123 0.877 31 H 0.147 0.853 32 H 0.135 0.865 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.035 0.965 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.140 0.860 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.211 6.355 26.200 27.286 hybrid contribution 0.288 -0.084 -0.764 0.821 sum -3.923 6.270 25.435 26.489 Atomic orbital electron populations 1.22839 0.80523 1.03203 1.00156 1.87898 1.20429 1.28649 1.95186 1.22212 0.94268 0.84493 0.96101 0.92045 1.22256 1.02632 1.02360 0.95422 1.20766 0.96633 1.03922 0.89661 1.19979 1.00268 0.92923 0.96257 1.21121 0.99377 0.96858 0.94791 1.21182 1.01372 0.99025 0.93675 1.20149 0.99111 0.94372 0.95334 1.20399 0.97944 1.00911 0.90642 1.19428 0.94567 0.96215 0.93372 1.21504 0.93988 1.47403 0.94340 0.94740 1.25985 1.04040 0.94208 0.94826 1.70063 1.32771 1.50644 1.05566 0.85669 0.78745 0.79665 0.78678 1.19122 1.20502 1.17490 1.21194 1.01426 0.95565 0.96891 1.21235 1.00115 0.99973 0.92146 0.94578 0.89314 0.92857 0.91969 0.89984 0.92128 0.90181 0.87691 0.85297 0.86467 0.92465 0.92215 0.96485 0.96823 0.92380 0.85972 0.83776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.82 113.37 1.23 1.70 16 2 O -0.40 -8.31 9.85 -148.98 -1.47 -9.77 16 3 C 0.09 1.43 2.71 30.59 0.08 1.52 16 4 H 0.06 1.00 7.79 -2.39 -0.02 0.98 16 5 C -0.17 -2.03 9.53 71.98 0.69 -1.35 16 6 C -0.07 -1.27 5.06 29.85 0.15 -1.12 16 7 C -0.09 -2.30 4.96 -19.87 -0.10 -2.40 16 8 C -0.10 -2.89 9.41 22.27 0.21 -2.68 16 9 C -0.13 -4.42 9.70 22.27 0.22 -4.21 16 10 C -0.09 -3.22 5.13 -19.86 -0.10 -3.32 16 11 C -0.06 -2.59 5.28 29.85 0.16 -2.43 16 12 C 0.00 0.08 4.02 29.85 0.12 0.20 16 13 C -0.53 -31.98 9.66 25.60 0.25 -31.73 16 14 H 0.03 2.25 7.99 -2.91 -0.02 2.22 16 15 C 0.01 0.38 5.47 84.65 0.46 0.84 16 16 N -0.95 -60.82 13.96 21.45 0.30 -60.53 16 17 Si 0.95 45.81 27.47 68.60 1.88 47.69 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.25 -11.48 6.54 99.48 0.65 -10.83 16 21 C -0.13 -4.16 9.70 22.27 0.22 -3.95 16 22 C -0.12 -2.96 9.70 22.27 0.22 -2.74 16 23 H 0.04 0.61 8.08 -2.39 -0.02 0.59 16 24 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 25 H 0.05 0.67 7.87 -2.39 -0.02 0.65 16 26 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.06 0.68 7.87 -2.39 -0.02 0.66 16 29 H 0.08 1.40 8.08 -2.39 -0.02 1.38 16 30 H 0.10 1.38 8.09 -2.39 -0.02 1.36 16 31 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 32 H 0.12 3.76 8.06 -2.91 -0.02 3.74 16 33 H 0.06 2.41 8.08 -2.39 -0.02 2.39 16 34 H 0.06 2.49 8.09 -2.39 -0.02 2.47 16 35 H 0.02 0.83 7.20 -2.39 -0.02 0.82 16 36 H 0.01 0.66 7.57 -2.39 -0.02 0.64 16 37 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 38 H 0.12 3.65 8.06 -2.91 -0.02 3.63 16 39 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -69.21 324.88 5.44 -63.77 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.93 Total: 10.50 kcal Atomic # 6 Polarization: -55.47 SS G_CDS: 3.79 Total: -51.67 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 0.30 Total: -60.53 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -1.47 Total: -9.77 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.88 Total: 47.69 kcal Total: -69.21 5.44 -63.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260307018.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.012 kcal (2) G-P(sol) polarization free energy of solvation -69.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds