Wall clock time and date at job start Mon Mar 30 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46682 * 2 1 4 4 O 1.42900 * 109.47152 * 120.00081 * 2 1 3 5 5 C 1.53000 * 109.47150 * 240.00160 * 2 1 3 6 6 C 1.50703 * 109.47132 * 174.99483 * 5 2 1 7 7 C 1.38257 * 119.99427 * 90.00022 * 6 5 2 8 8 C 1.38217 * 119.99928 * 179.97438 * 7 6 5 9 9 C 1.38261 * 119.99597 * 0.02562 * 8 7 6 10 10 C 1.38208 * 120.00216 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.99732 * 179.97438 * 10 9 8 12 12 C 1.53007 * 109.46816 * 178.75001 * 11 10 9 13 13 C 1.52997 * 109.46922 * 298.74641 * 11 10 9 14 14 C 1.50692 * 109.47281 * 58.75382 * 11 10 9 15 15 H 1.08005 * 120.00467 * 0.08155 * 14 11 10 16 16 C 1.37881 * 119.99979 * 180.08429 * 14 11 10 17 17 N 1.31516 * 119.99814 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 120.00004 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.47336 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47214 * 119.99896 * 18 16 14 21 21 H 1.48499 * 109.46980 * 239.99777 * 18 16 14 22 22 C 1.38209 * 120.00367 * 269.72646 * 6 5 2 23 23 H 1.08997 * 109.47303 * 60.00054 * 1 2 3 24 24 H 1.09000 * 109.46682 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46841 * 299.99646 * 1 2 3 26 26 H 0.96699 * 113.99726 * 299.99697 * 4 2 1 27 27 H 1.08993 * 109.47207 * 294.99810 * 5 2 1 28 28 H 1.09004 * 109.47101 * 54.99730 * 5 2 1 29 29 H 1.07996 * 120.00261 * 0.02562 * 7 6 5 30 30 H 1.07998 * 120.00078 * 180.02562 * 8 7 6 31 31 H 1.08003 * 119.99647 * 179.97438 * 9 8 7 32 32 H 1.09007 * 109.46659 * 59.99636 * 12 11 10 33 33 H 1.08992 * 109.47129 * 179.97438 * 12 11 10 34 34 H 1.08995 * 109.47018 * 299.99913 * 12 11 10 35 35 H 1.08995 * 109.46913 * 60.00744 * 13 11 10 36 36 H 1.09005 * 109.47036 * 180.02562 * 13 11 10 37 37 H 1.08997 * 109.47475 * 300.00150 * 13 11 10 38 38 H 0.97001 * 119.99864 * 180.02562 * 17 16 14 39 39 H 1.08001 * 119.99820 * 359.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0400 -0.7212 -1.2493 6 6 3.5420 -0.6148 -1.3128 7 6 4.3293 -1.5816 -0.7154 8 6 5.7068 -1.4843 -0.7741 9 6 6.2972 -0.4199 -1.4297 10 6 5.5102 0.5471 -2.0260 11 6 6.1539 1.7076 -2.7401 12 6 5.0677 2.6078 -3.3325 13 6 6.9980 2.5114 -1.7491 14 6 7.0358 1.1897 -3.8469 15 1 7.1206 0.1265 -4.0172 16 6 7.7345 2.0731 -4.6422 17 7 7.6309 3.3677 -4.4352 18 14 8.8282 1.4311 -6.0137 19 1 8.7725 -0.0527 -6.0378 20 1 8.3548 1.9658 -7.3158 21 1 10.2271 1.8697 -5.7776 22 6 4.1323 0.4462 -1.9731 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.7210 -0.2701 1.9979 27 1 1.7517 -1.7714 -1.2056 28 1 1.6054 -0.2617 -2.1370 29 1 3.8680 -2.4132 -0.2036 30 1 6.3218 -2.2397 -0.3078 31 1 7.3736 -0.3437 -1.4752 32 1 4.4298 2.9824 -2.5319 33 1 5.5332 3.4474 -3.8486 34 1 4.4663 2.0352 -4.0385 35 1 7.7718 1.8701 -1.3272 36 1 7.4633 3.3511 -2.2656 37 1 6.3602 2.8861 -0.9486 38 1 8.1222 3.9892 -4.9949 39 1 3.5172 1.1989 -2.4439 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260413070.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:18 Heat of formation + Delta-G solvation = -46.805640 kcal Electronic energy + Delta-G solvation = -18310.582723 eV Core-core repulsion = 15603.268980 eV Total energy + Delta-G solvation = -2707.313743 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.08889 -37.39888 -35.24241 -32.67919 -31.50883 -30.22130 -28.53068 -26.57000 -25.40191 -25.07758 -22.12734 -21.69974 -20.29503 -18.63339 -17.27007 -16.12063 -15.80772 -14.78064 -14.70154 -14.42418 -14.20182 -13.48898 -13.10074 -12.87092 -12.70622 -12.37971 -12.04763 -11.94099 -11.53021 -11.46755 -11.33045 -11.03317 -10.83799 -10.80187 -10.55176 -10.36408 -10.26905 -10.11724 -9.92634 -9.51128 -9.20141 -8.82919 -8.32435 -7.97643 -7.58896 -5.95472 -4.04904 2.16933 2.32071 3.29635 3.38142 3.43133 4.29263 4.42382 4.61040 4.92652 5.01580 5.24447 5.30635 5.43738 5.57299 5.68827 5.76690 5.81257 5.92147 5.99807 6.12042 6.16154 6.35956 6.47727 6.69803 6.78544 6.80769 6.96494 7.04288 7.10721 7.30757 7.33961 7.38470 7.51236 7.70569 7.72084 7.76118 7.92226 8.11824 8.23582 8.48375 8.95743 9.59915 11.05471 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.033308 B = 0.005644 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.433778 B = 4959.415680 C = 5226.275045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.105 3.895 3 H 0.056 0.944 4 O -0.560 6.560 5 C -0.069 4.069 6 C -0.091 4.091 7 C -0.127 4.127 8 C -0.131 4.131 9 C -0.115 4.115 10 C -0.028 4.028 11 C 0.093 3.907 12 C -0.131 4.131 13 C -0.125 4.125 14 C -0.496 4.496 15 H 0.057 0.943 16 C 0.064 3.936 17 N -0.887 5.887 18 Si 0.890 3.110 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.131 4.131 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.371 0.629 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.118 0.882 32 H 0.010 0.990 33 H 0.084 0.916 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.086 0.914 37 H 0.008 0.992 38 H 0.258 0.742 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.514 -4.900 7.883 14.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.046 3.954 3 H 0.074 0.926 4 O -0.365 6.365 5 C -0.106 4.106 6 C -0.091 4.091 7 C -0.145 4.145 8 C -0.149 4.149 9 C -0.133 4.133 10 C -0.028 4.028 11 C 0.093 3.907 12 C -0.189 4.189 13 C -0.183 4.183 14 C -0.534 4.534 15 H 0.075 0.925 16 C -0.137 4.137 17 N -0.526 5.526 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.149 4.149 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.217 0.783 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.136 0.864 32 H 0.029 0.971 33 H 0.103 0.897 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.104 0.896 37 H 0.027 0.973 38 H 0.069 0.931 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.170 -5.119 7.342 13.548 hybrid contribution 0.330 0.031 -0.371 0.497 sum -9.840 -5.088 6.972 13.090 Atomic orbital electron populations 1.22539 0.96902 1.02547 1.02312 1.21787 0.91768 0.95683 0.86116 0.92552 1.86591 1.77157 1.57194 1.15577 1.20560 0.92988 1.01228 0.95852 1.19568 0.94107 0.95979 0.99442 1.20677 0.93407 0.99172 1.01226 1.21029 0.94674 0.98491 1.00675 1.21054 1.00104 0.94163 0.98006 1.20568 0.92563 0.96393 0.93236 1.17258 0.92474 0.88614 0.92341 1.21876 0.97142 1.01638 0.98232 1.21791 0.98343 1.01588 0.96573 1.21122 1.25455 0.92946 1.13862 0.92520 1.24914 0.96621 0.94879 0.97283 1.69828 1.42398 1.01072 1.39330 0.86557 0.80389 0.79140 0.82068 1.19834 1.21102 1.21089 1.21105 0.95209 0.97951 1.00656 0.91562 0.91970 0.92576 0.78309 0.90975 0.90092 0.87497 0.87470 0.86433 0.97101 0.89698 0.95349 0.95402 0.89565 0.97319 0.93138 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.72 9.53 37.16 0.35 -1.36 16 2 C 0.11 1.28 3.57 -26.73 -0.10 1.19 16 3 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 4 O -0.56 -7.07 12.81 -35.23 -0.45 -7.53 16 5 C -0.07 -0.96 5.06 -27.88 -0.14 -1.10 16 6 C -0.09 -1.61 4.97 -104.62 -0.52 -2.12 16 7 C -0.13 -2.24 9.40 -39.58 -0.37 -2.62 16 8 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 9 C -0.12 -2.43 8.68 -39.58 -0.34 -2.77 16 10 C -0.03 -0.62 4.72 -104.62 -0.49 -1.11 16 11 C 0.09 2.29 0.58 -156.81 -0.09 2.20 16 12 C -0.13 -3.13 6.91 37.16 0.26 -2.87 16 13 C -0.13 -3.04 8.07 37.16 0.30 -2.74 16 14 C -0.50 -13.31 7.66 -34.44 -0.26 -13.58 16 15 H 0.06 1.56 7.57 -52.48 -0.40 1.16 16 16 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 17 N -0.89 -24.22 9.35 55.43 0.52 -23.70 16 18 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C -0.13 -2.63 8.63 -39.58 -0.34 -2.97 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.37 3.08 9.08 45.56 0.41 3.49 16 27 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 28 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 29 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 31 H 0.12 2.50 7.63 -52.48 -0.40 2.09 16 32 H 0.01 0.22 7.47 -51.92 -0.39 -0.17 16 33 H 0.08 2.20 6.08 -51.93 -0.32 1.89 16 34 H 0.03 0.65 7.56 -51.93 -0.39 0.26 16 35 H 0.03 0.65 7.46 -51.93 -0.39 0.26 16 36 H 0.09 2.25 6.06 -51.93 -0.31 1.94 16 37 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 38 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 39 H 0.12 2.26 5.90 -52.49 -0.31 1.95 16 LS Contribution 312.11 15.07 4.70 4.70 Total: -1.00 -28.92 312.11 -7.92 -36.84 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.43 Total: 4.66 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: -2.24 Total: -31.05 kcal Atomic # 7 Polarization: -24.22 SS G_CDS: 0.52 Total: -23.70 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -0.45 Total: -7.53 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.92 -7.92 -36.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260413070.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.967 kcal (2) G-P(sol) polarization free energy of solvation -28.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds