Wall clock time and date at job start Mon Mar 30 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46682 * 2 1 4 4 O 1.42900 * 109.47152 * 120.00081 * 2 1 3 5 5 C 1.53000 * 109.47150 * 240.00160 * 2 1 3 6 6 C 1.50703 * 109.47132 * 174.99483 * 5 2 1 7 7 C 1.38257 * 119.99427 * 90.00022 * 6 5 2 8 8 C 1.38217 * 119.99928 * 179.97438 * 7 6 5 9 9 C 1.38261 * 119.99597 * 0.02562 * 8 7 6 10 10 C 1.38208 * 120.00216 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.99732 * 179.97438 * 10 9 8 12 12 C 1.53007 * 109.46816 * 178.75001 * 11 10 9 13 13 C 1.52997 * 109.46922 * 298.74641 * 11 10 9 14 14 C 1.50692 * 109.47281 * 58.75382 * 11 10 9 15 15 H 1.08005 * 120.00467 * 0.08155 * 14 11 10 16 16 C 1.37881 * 119.99979 * 180.08429 * 14 11 10 17 17 N 1.31516 * 119.99814 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 120.00004 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.47336 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47214 * 119.99896 * 18 16 14 21 21 H 1.48499 * 109.46980 * 239.99777 * 18 16 14 22 22 C 1.38209 * 120.00367 * 269.72646 * 6 5 2 23 23 H 1.08997 * 109.47303 * 60.00054 * 1 2 3 24 24 H 1.09000 * 109.46682 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46841 * 299.99646 * 1 2 3 26 26 H 0.96699 * 113.99726 * 299.99697 * 4 2 1 27 27 H 1.08993 * 109.47207 * 294.99810 * 5 2 1 28 28 H 1.09004 * 109.47101 * 54.99730 * 5 2 1 29 29 H 1.07996 * 120.00261 * 0.02562 * 7 6 5 30 30 H 1.07998 * 120.00078 * 180.02562 * 8 7 6 31 31 H 1.08003 * 119.99647 * 179.97438 * 9 8 7 32 32 H 1.09007 * 109.46659 * 59.99636 * 12 11 10 33 33 H 1.08992 * 109.47129 * 179.97438 * 12 11 10 34 34 H 1.08995 * 109.47018 * 299.99913 * 12 11 10 35 35 H 1.08995 * 109.46913 * 60.00744 * 13 11 10 36 36 H 1.09005 * 109.47036 * 180.02562 * 13 11 10 37 37 H 1.08997 * 109.47475 * 300.00150 * 13 11 10 38 38 H 0.97001 * 119.99864 * 180.02562 * 17 16 14 39 39 H 1.08001 * 119.99820 * 359.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0400 -0.7212 -1.2493 6 6 3.5420 -0.6148 -1.3128 7 6 4.3293 -1.5816 -0.7154 8 6 5.7068 -1.4843 -0.7741 9 6 6.2972 -0.4199 -1.4297 10 6 5.5102 0.5471 -2.0260 11 6 6.1539 1.7076 -2.7401 12 6 5.0677 2.6078 -3.3325 13 6 6.9980 2.5114 -1.7491 14 6 7.0358 1.1897 -3.8469 15 1 7.1206 0.1265 -4.0172 16 6 7.7345 2.0731 -4.6422 17 7 7.6309 3.3677 -4.4352 18 14 8.8282 1.4311 -6.0137 19 1 8.7725 -0.0527 -6.0378 20 1 8.3548 1.9658 -7.3158 21 1 10.2271 1.8697 -5.7776 22 6 4.1323 0.4462 -1.9731 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.7210 -0.2701 1.9979 27 1 1.7517 -1.7714 -1.2056 28 1 1.6054 -0.2617 -2.1370 29 1 3.8680 -2.4132 -0.2036 30 1 6.3218 -2.2397 -0.3078 31 1 7.3736 -0.3437 -1.4752 32 1 4.4298 2.9824 -2.5319 33 1 5.5332 3.4474 -3.8486 34 1 4.4663 2.0352 -4.0385 35 1 7.7718 1.8701 -1.3272 36 1 7.4633 3.3511 -2.2656 37 1 6.3602 2.8861 -0.9486 38 1 8.1222 3.9892 -4.9949 39 1 3.5172 1.1989 -2.4439 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260413070.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:17 Heat of formation + Delta-G solvation = -62.852639 kcal Electronic energy + Delta-G solvation = -18311.278573 eV Core-core repulsion = 15603.268980 eV Total energy + Delta-G solvation = -2708.009593 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.56584 -38.48148 -36.95261 -33.96556 -33.34311 -31.34040 -30.16883 -28.07297 -27.24368 -26.82136 -23.77213 -22.81017 -21.64288 -20.37680 -18.19850 -17.93493 -17.52640 -16.56917 -15.87599 -15.69453 -15.47654 -15.00952 -14.69163 -14.56893 -13.93321 -13.57594 -13.38253 -13.27655 -13.18421 -12.88962 -12.77921 -12.71470 -12.60478 -12.42887 -12.16987 -12.15987 -12.00089 -11.62713 -11.35022 -11.00884 -10.79569 -10.76477 -10.36393 -9.46243 -9.16466 -7.99552 -6.15312 0.68330 0.79346 1.39995 1.43632 1.53565 2.45629 3.09444 3.23593 3.47416 3.88692 4.15625 4.16385 4.29598 4.38490 4.46054 4.49684 4.66347 4.80924 4.84040 4.87938 4.91849 4.96804 5.03768 5.07962 5.11641 5.16182 5.34387 5.39005 5.41425 5.47434 5.62584 5.66533 5.79580 5.86758 5.93627 6.17123 6.32171 6.39804 6.49838 6.89422 6.98846 7.51535 8.99188 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.033308 B = 0.005644 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.433778 B = 4959.415680 C = 5226.275045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.107 3.893 3 H 0.045 0.955 4 O -0.579 6.579 5 C -0.071 4.071 6 C -0.083 4.083 7 C -0.126 4.126 8 C -0.127 4.127 9 C -0.137 4.137 10 C -0.053 4.053 11 C 0.086 3.914 12 C -0.120 4.120 13 C -0.115 4.115 14 C -0.510 4.510 15 H 0.042 0.958 16 C 0.023 3.977 17 N -0.904 5.904 18 Si 0.945 3.055 19 H -0.275 1.275 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.143 4.143 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.389 0.611 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.104 0.896 32 H 0.028 0.972 33 H 0.060 0.940 34 H 0.026 0.974 35 H 0.023 0.977 36 H 0.063 0.937 37 H 0.020 0.980 38 H 0.259 0.741 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.064 -6.105 8.622 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.048 3.952 3 H 0.063 0.937 4 O -0.387 6.387 5 C -0.108 4.108 6 C -0.083 4.083 7 C -0.144 4.144 8 C -0.144 4.144 9 C -0.156 4.156 10 C -0.053 4.053 11 C 0.086 3.914 12 C -0.177 4.177 13 C -0.173 4.173 14 C -0.548 4.548 15 H 0.060 0.940 16 C -0.176 4.176 17 N -0.544 5.544 18 Si 0.772 3.228 19 H -0.200 1.200 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.161 4.161 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.238 0.762 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.122 0.878 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.069 0.931 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.728 -6.318 8.096 15.589 hybrid contribution 0.775 0.364 -0.531 1.007 sum -10.953 -5.954 7.565 14.583 Atomic orbital electron populations 1.22448 0.94436 1.03118 1.03457 1.21715 0.93591 0.94554 0.85312 0.93682 1.86526 1.77743 1.57771 1.16634 1.20674 0.90257 1.02409 0.97492 1.19952 0.96380 0.94568 0.97432 1.21007 0.93108 0.99629 1.00655 1.21300 0.95558 0.97959 0.99631 1.21039 0.99502 0.95397 0.99617 1.20453 0.93770 0.96400 0.94719 1.17247 0.92441 0.89704 0.92034 1.21711 0.97032 1.00548 0.98425 1.21648 0.98357 1.00644 0.96661 1.21297 1.26298 0.92262 1.14937 0.94009 1.25526 0.97751 0.95136 0.99143 1.69941 1.42840 1.01689 1.39916 0.85703 0.78949 0.78384 0.79767 1.19992 1.20694 1.20688 1.21172 0.94310 0.99134 1.01520 0.90938 0.91635 0.91007 0.76222 0.89890 0.88999 0.85186 0.84842 0.87820 0.95326 0.92121 0.95535 0.95782 0.91801 0.96132 0.93120 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 9.53 71.98 0.69 -2.02 16 2 C 0.11 2.31 3.57 30.59 0.11 2.42 16 3 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 4 O -0.58 -12.93 12.81 -148.98 -1.91 -14.84 16 5 C -0.07 -1.79 5.06 29.85 0.15 -1.63 16 6 C -0.08 -2.77 4.97 -19.87 -0.10 -2.87 16 7 C -0.13 -4.15 9.40 22.27 0.21 -3.94 16 8 C -0.13 -4.47 10.05 22.27 0.22 -4.25 16 9 C -0.14 -5.80 8.68 22.27 0.19 -5.61 16 10 C -0.05 -2.39 4.72 -19.87 -0.09 -2.49 16 11 C 0.09 4.29 0.58 -53.67 -0.03 4.26 16 12 C -0.12 -5.76 6.91 71.98 0.50 -5.26 16 13 C -0.12 -5.71 8.07 71.98 0.58 -5.13 16 14 C -0.51 -27.97 7.66 25.60 0.20 -27.77 16 15 H 0.04 2.36 7.57 -2.91 -0.02 2.34 16 16 C 0.02 1.27 5.15 84.66 0.44 1.70 16 17 N -0.90 -50.23 9.35 21.45 0.20 -50.03 16 18 Si 0.95 43.75 29.54 68.60 2.03 45.77 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 C -0.14 -5.63 8.63 22.27 0.19 -5.44 16 23 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 25 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.39 5.36 9.08 -74.06 -0.67 4.68 16 27 H 0.08 1.92 8.08 -2.39 -0.02 1.90 16 28 H 0.09 2.09 8.08 -2.38 -0.02 2.08 16 29 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 30 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 31 H 0.10 4.54 7.63 -2.91 -0.02 4.51 16 32 H 0.03 1.22 7.47 -2.38 -0.02 1.20 16 33 H 0.06 3.20 6.08 -2.39 -0.01 3.19 16 34 H 0.03 1.23 7.56 -2.39 -0.02 1.21 16 35 H 0.02 1.14 7.46 -2.39 -0.02 1.12 16 36 H 0.06 3.42 6.06 -2.38 -0.01 3.41 16 37 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 39 H 0.12 4.52 5.90 -2.91 -0.02 4.51 16 Total: -1.00 -61.66 312.11 3.92 -57.74 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.35 Total: 19.39 kcal Atomic # 6 Polarization: -61.28 SS G_CDS: 3.25 Total: -58.03 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.20 Total: -50.03 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -1.91 Total: -14.84 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -61.66 3.92 -57.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260413070.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.116 kcal (2) G-P(sol) polarization free energy of solvation -61.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds