Wall clock time and date at job start Mon Mar 30 2020 06:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35907 * 116.99959 * 2 1 4 4 C 1.38752 * 120.05384 * 179.97438 * 3 2 1 5 5 C 1.38129 * 119.94121 * 180.02562 * 4 3 2 6 6 C 1.50694 * 119.97192 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46914 * 300.00195 * 6 5 4 8 8 C 1.53001 * 109.47289 * 59.99739 * 6 5 4 9 9 C 1.38285 * 120.05529 * 359.97438 * 5 4 3 10 10 C 1.38250 * 120.11132 * 359.79340 * 9 5 4 11 11 C 1.50700 * 119.97005 * 180.23125 * 10 9 5 12 12 H 1.09000 * 109.47354 * 0.22994 * 11 10 9 13 13 C 1.53007 * 109.47030 * 240.22779 * 11 10 9 14 14 C 1.50701 * 109.47132 * 120.23384 * 11 10 9 15 15 H 1.07997 * 120.00459 * 35.01412 * 14 11 10 16 16 C 1.37877 * 119.99885 * 215.02050 * 14 11 10 17 17 N 1.31509 * 120.00202 * 184.91055 * 16 14 11 18 18 Si 1.86803 * 119.99924 * 4.91194 * 16 14 11 19 19 H 1.48503 * 109.47140 * 84.83456 * 18 16 14 20 20 H 1.48502 * 109.47149 * 204.83638 * 18 16 14 21 21 H 1.48503 * 109.47075 * 324.83455 * 18 16 14 22 22 C 1.38166 * 120.05666 * 0.46024 * 10 9 5 23 23 H 1.08999 * 109.47055 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47660 * 300.00508 * 1 2 3 25 25 H 1.09005 * 109.46958 * 60.01014 * 1 2 3 26 26 H 1.07998 * 120.03037 * 359.97438 * 4 3 2 27 27 H 1.09003 * 109.47340 * 180.02562 * 6 5 4 28 28 H 1.09000 * 109.47303 * 60.00359 * 7 6 5 29 29 H 1.09000 * 109.47269 * 180.02562 * 7 6 5 30 30 H 1.08995 * 109.47183 * 299.99745 * 7 6 5 31 31 H 1.09000 * 109.47480 * 179.97438 * 8 6 5 32 32 H 1.09003 * 109.47366 * 300.00518 * 8 6 5 33 33 H 1.09002 * 109.46615 * 60.00294 * 8 6 5 34 34 H 1.07995 * 119.94554 * 180.02562 * 9 5 4 35 35 H 1.09001 * 109.47036 * 54.98237 * 13 11 10 36 36 H 1.08998 * 109.47173 * 174.98049 * 13 11 10 37 37 H 1.09000 * 109.47227 * 294.98256 * 13 11 10 38 38 H 0.97005 * 120.00061 * 179.97438 * 17 16 14 39 39 H 1.07997 * 120.02780 * 179.79223 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4315 1.2849 0.0005 5 6 4.0562 2.5168 0.0011 6 6 5.5609 2.5979 0.0011 7 6 6.1090 1.9046 1.2500 8 6 6.1090 1.9057 -1.2485 9 6 3.3018 3.6758 0.0005 10 6 1.9212 3.6048 -0.0048 11 6 1.1023 4.8699 -0.0107 12 1 1.7675 5.7333 -0.0139 13 6 0.2188 4.9113 1.2379 14 6 0.2336 4.9003 -1.2418 15 1 -0.1826 3.9833 -1.6319 16 6 -0.0297 6.0989 -1.8702 17 7 -0.8643 6.1396 -2.8857 18 14 0.7991 7.6652 -1.2792 19 1 2.1371 7.7865 -1.9120 20 1 -0.0332 8.8370 -1.6527 21 1 0.9524 7.6174 0.1972 22 6 1.2915 2.3749 -0.0001 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 4.0210 0.3800 0.0014 27 1 5.8685 3.6437 0.0020 28 1 5.8015 0.8588 1.2495 29 1 7.1974 1.9636 1.2503 30 1 5.7186 2.3977 2.1402 31 1 7.1974 1.9647 -1.2487 32 1 5.8015 0.8599 -1.2490 33 1 5.7185 2.3997 -2.1382 34 1 3.7921 4.6381 0.0005 35 1 0.8401 4.7995 2.1265 36 1 -0.3067 5.8653 1.2796 37 1 -0.5063 4.0985 1.1970 38 1 -1.0498 6.9830 -3.3276 39 1 0.2129 2.3200 -0.0009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260548294.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:26 Heat of formation + Delta-G solvation = -41.282732 kcal Electronic energy + Delta-G solvation = -18296.358386 eV Core-core repulsion = 15589.284134 eV Total energy + Delta-G solvation = -2707.074252 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.80119 -37.67708 -35.69421 -33.35281 -31.55536 -29.32641 -28.57901 -27.01975 -26.79315 -25.20950 -23.23421 -21.76605 -20.71081 -18.61222 -17.18509 -16.90303 -15.67354 -15.37572 -15.31206 -14.47202 -14.33481 -13.88749 -13.37368 -13.30215 -12.95525 -12.44967 -12.26841 -12.18191 -12.11298 -11.96485 -11.45785 -11.30347 -11.09917 -11.07450 -10.96870 -10.82851 -10.57348 -10.50700 -10.09147 -9.81964 -9.54875 -9.14356 -8.57357 -7.92423 -7.55091 -6.12139 -4.11115 1.97681 2.12718 3.26004 3.34257 3.35296 3.68251 4.36887 4.39779 4.92704 5.06167 5.21112 5.35944 5.36291 5.49041 5.54871 5.64815 5.71173 5.71598 5.81280 5.84276 5.92539 5.94888 6.05456 6.11212 6.20633 6.30581 6.37379 6.41750 6.53531 6.69814 6.79381 6.89551 6.99391 7.14076 7.23904 7.36838 7.53248 7.72226 7.93347 8.46701 8.91835 9.49653 11.00807 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.018222 B = 0.007696 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.232408 B = 3637.415567 C = 4548.370347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.326 6.326 3 C 0.120 3.880 4 C -0.171 4.171 5 C -0.045 4.045 6 C -0.054 4.054 7 C -0.141 4.141 8 C -0.143 4.143 9 C -0.165 4.165 10 C 0.013 3.987 11 C 0.037 3.963 12 H 0.040 0.960 13 C -0.133 4.133 14 C -0.505 4.505 15 H 0.075 0.925 16 C 0.072 3.928 17 N -0.898 5.898 18 Si 0.874 3.126 19 H -0.275 1.275 20 H -0.289 1.289 21 H -0.264 1.264 22 C -0.197 4.197 23 H 0.092 0.908 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.117 0.883 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.114 0.886 35 H 0.024 0.976 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.264 0.736 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.158 -8.396 7.163 14.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.240 6.240 3 C 0.076 3.924 4 C -0.189 4.189 5 C -0.045 4.045 6 C -0.073 4.073 7 C -0.199 4.199 8 C -0.200 4.200 9 C -0.183 4.183 10 C 0.012 3.988 11 C 0.018 3.982 12 H 0.058 0.942 13 C -0.191 4.191 14 C -0.542 4.542 15 H 0.093 0.907 16 C -0.130 4.130 17 N -0.536 5.536 18 Si 0.701 3.299 19 H -0.201 1.201 20 H -0.215 1.215 21 H -0.188 1.188 22 C -0.216 4.216 23 H 0.110 0.890 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.135 0.865 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.132 0.868 35 H 0.043 0.957 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.140 -8.463 7.015 14.296 hybrid contribution -0.012 1.079 0.043 1.080 sum 9.128 -7.385 7.059 13.699 Atomic orbital electron populations 1.22981 0.78805 1.02980 1.01869 1.85964 1.21110 1.27620 1.89319 1.18996 0.92162 0.83920 0.97365 1.19867 0.90903 0.97458 1.10699 1.19446 0.94428 0.92394 0.98259 1.20080 0.91145 1.00478 0.95554 1.21839 0.99984 1.00750 0.97297 1.21844 0.99935 1.00778 0.97435 1.20878 0.93554 0.97239 1.06651 1.20153 0.93094 0.95769 0.89767 1.18368 0.93803 0.90476 0.95571 0.94223 1.21984 0.99385 1.00962 0.96745 1.20914 1.28984 0.95385 1.08940 0.90667 1.25035 0.94631 0.98731 0.94590 1.69890 1.34601 1.26699 1.22369 0.86901 0.79904 0.83192 0.79854 1.20062 1.21478 1.18828 1.21073 1.00134 0.91486 1.08866 0.88967 0.92840 0.92350 0.86477 0.90568 0.92495 0.92841 0.92613 0.92845 0.92489 0.92368 0.86845 0.95664 0.93532 0.93486 0.92567 0.85552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.33 -5.53 10.50 -19.45 -0.20 -5.74 16 3 C 0.12 2.23 6.69 -39.22 -0.26 1.96 16 4 C -0.17 -2.92 8.65 -39.43 -0.34 -3.26 16 5 C -0.05 -0.76 4.78 -104.65 -0.50 -1.26 16 6 C -0.05 -0.72 3.09 -91.77 -0.28 -1.00 16 7 C -0.14 -1.61 9.01 37.16 0.33 -1.27 16 8 C -0.14 -1.73 9.01 37.16 0.33 -1.39 16 9 C -0.16 -3.17 9.29 -39.56 -0.37 -3.54 16 10 C 0.01 0.27 4.77 -104.64 -0.50 -0.23 16 11 C 0.04 0.86 2.14 -92.92 -0.20 0.66 16 12 H 0.04 0.93 5.02 -51.93 -0.26 0.67 16 13 C -0.13 -2.81 8.91 37.16 0.33 -2.47 16 14 C -0.50 -13.89 8.64 -34.44 -0.30 -14.18 16 15 H 0.08 2.25 7.64 -52.49 -0.40 1.85 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 18 Si 0.87 21.24 26.99 -169.99 -4.59 16.65 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.26 -6.09 6.82 56.52 0.39 -5.70 16 22 C -0.20 -3.98 7.64 -39.43 -0.30 -4.28 16 23 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.05 0.70 7.66 -51.93 -0.40 0.30 16 25 H 0.06 0.84 7.66 -51.93 -0.40 0.44 16 26 H 0.12 1.79 7.10 -52.49 -0.37 1.41 16 27 H 0.08 0.98 7.87 -51.93 -0.41 0.57 16 28 H 0.06 0.64 7.38 -51.93 -0.38 0.25 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.68 7.39 -51.93 -0.38 0.29 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.11 2.06 7.83 -52.49 -0.41 1.65 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.96 7.57 -51.93 -0.39 0.56 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.13 2.54 5.80 -52.49 -0.30 2.24 16 LS Contribution 314.60 15.07 4.74 4.74 Total: -1.00 -30.10 314.60 -6.66 -36.76 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.22 Total: 0.84 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: -1.16 Total: -26.94 kcal Atomic # 7 Polarization: -27.09 SS G_CDS: 0.77 Total: -26.31 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.20 Total: -5.74 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.59 Total: 16.65 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.10 -6.66 -36.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260548294.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.528 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds