Wall clock time and date at job start Mon Mar 30 2020 06:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99758 * 2 1 4 4 H 1.48502 * 109.47145 * 269.99988 * 3 2 1 5 5 H 1.48494 * 109.47099 * 30.00209 * 3 2 1 6 6 H 1.48506 * 109.46971 * 150.00123 * 3 2 1 7 7 C 1.37875 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00300 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99893 * 179.97438 * 7 2 1 10 10 C 1.50699 * 109.47248 * 180.02562 * 9 7 2 11 11 N 1.30501 * 125.64973 * 269.96506 * 10 9 7 12 12 C 1.34131 * 109.25498 * 180.02562 * 11 10 9 13 13 C 1.34666 * 108.02058 * 359.72600 * 12 11 10 14 14 N 1.35047 * 125.65153 * 89.99846 * 10 9 7 15 15 C 1.46500 * 126.39687 * 359.97031 * 14 10 9 16 16 C 1.53001 * 109.47094 * 84.99412 * 15 14 10 17 17 C 1.53000 * 109.46886 * 184.99933 * 16 15 14 18 18 C 1.52997 * 109.47060 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.47317 * 59.99960 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 H 0.96995 * 120.00130 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47316 * 60.00428 * 9 7 2 24 24 H 1.09001 * 109.47801 * 300.00242 * 9 7 2 25 25 H 1.07996 * 125.98865 * 180.02562 * 12 11 10 26 26 H 1.08008 * 126.59108 * 180.27992 * 13 12 11 27 27 H 1.09008 * 109.47071 * 324.99776 * 15 14 10 28 28 H 1.09000 * 109.47025 * 205.00018 * 15 14 10 29 29 H 1.08992 * 109.47514 * 305.00368 * 16 15 14 30 30 H 1.09002 * 109.47398 * 300.00496 * 17 16 15 31 31 H 1.09001 * 109.47194 * 60.00677 * 17 16 15 32 32 H 1.08996 * 109.47853 * 180.02562 * 18 17 16 33 33 H 1.09002 * 109.47153 * 300.00319 * 18 17 16 34 34 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 36 36 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 37 37 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 38 38 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 39 39 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0140 -2.6147 -0.0023 11 7 4.2686 -3.3323 1.0576 12 6 4.6978 -4.5451 0.6780 13 6 4.7038 -4.5824 -0.6681 14 7 4.2760 -3.3561 -1.1002 15 6 4.1243 -2.9297 -2.4936 16 6 5.3861 -2.1887 -2.9404 17 6 5.1798 -1.6355 -4.3519 18 6 6.4418 -0.8951 -4.7990 19 6 7.6276 -1.8620 -4.7985 20 6 7.8339 -2.4153 -3.3870 21 6 6.5718 -3.1557 -2.9398 22 1 -0.4850 0.8400 0.0004 23 1 3.8753 -0.6803 0.8889 24 1 3.8747 -0.6799 -0.8911 25 1 4.9834 -5.3520 1.3366 26 1 4.9932 -5.4184 -1.2877 27 1 3.2638 -2.2659 -2.5788 28 1 3.9728 -3.8039 -3.1266 29 1 5.5871 -1.3665 -2.2537 30 1 4.9788 -2.4578 -5.0387 31 1 4.3348 -0.9469 -4.3524 32 1 6.2948 -0.5006 -5.8044 33 1 6.6432 -0.0729 -4.1123 34 1 8.5268 -1.3344 -5.1166 35 1 7.4262 -2.6842 -5.4852 36 1 8.0352 -1.5930 -2.7003 37 1 8.6784 -3.1044 -3.3867 38 1 6.7190 -3.5502 -1.9345 39 1 6.3705 -3.9778 -3.6266 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260553846.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:53 Heat of formation + Delta-G solvation = 26.379125 kcal Electronic energy + Delta-G solvation = -18561.968308 eV Core-core repulsion = 15890.120845 eV Total energy + Delta-G solvation = -2671.847462 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.40607 -38.60858 -34.03288 -33.23629 -30.94927 -30.69988 -30.47849 -27.24272 -25.66561 -22.82753 -22.63293 -21.53723 -20.64964 -19.69901 -18.70123 -16.87789 -16.32292 -15.70198 -14.78514 -14.41969 -14.26862 -14.07366 -13.89331 -13.60724 -13.03500 -12.84270 -12.56960 -12.22214 -12.16756 -11.98769 -11.77650 -11.54242 -11.18564 -11.02356 -10.65555 -10.60929 -10.46624 -10.28591 -10.07703 -10.05056 -9.44025 -9.11595 -8.84433 -8.62546 -7.51170 -6.10954 -4.10865 2.79836 3.24416 3.34074 3.37543 3.46832 3.99250 4.37474 4.58524 4.67525 4.70022 5.00461 5.16532 5.19758 5.27027 5.34475 5.40810 5.45456 5.47160 5.48961 5.58481 5.63510 5.84626 5.90566 5.96344 6.02600 6.06249 6.12299 6.12416 6.20118 6.27168 6.33384 6.43517 6.80211 6.97216 7.16767 7.51328 7.57819 7.97722 8.45893 8.93428 8.99902 9.47479 11.01928 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.008015 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.885728 B = 3492.560046 C = 4536.523879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.513 4.513 8 H 0.073 0.927 9 C 0.062 3.938 10 C 0.268 3.732 11 N -0.508 5.508 12 C -0.036 4.036 13 C -0.087 4.087 14 N -0.453 5.453 15 C 0.110 3.890 16 C -0.102 4.102 17 C -0.112 4.112 18 C -0.119 4.119 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.114 4.114 22 H 0.265 0.735 23 H 0.048 0.952 24 H 0.027 0.973 25 H 0.157 0.843 26 H 0.160 0.840 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.154 -4.532 -11.005 18.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.700 3.300 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.552 4.552 8 H 0.091 0.909 9 C 0.023 3.977 10 C 0.005 3.995 11 N -0.226 5.226 12 C -0.184 4.184 13 C -0.219 4.219 14 N -0.135 5.135 15 C -0.013 4.013 16 C -0.122 4.122 17 C -0.151 4.151 18 C -0.156 4.156 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.151 4.151 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.045 0.955 25 H 0.174 0.826 26 H 0.177 0.823 27 H 0.121 0.879 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.890 -4.135 -10.334 17.800 hybrid contribution 0.365 0.375 -0.826 0.978 sum 14.256 -3.761 -11.160 18.491 Atomic orbital electron populations 1.69888 1.06224 1.27053 1.50264 1.24924 0.94737 0.98846 0.94377 0.86866 0.80700 0.83782 0.78635 1.20088 1.20984 1.18694 1.20805 0.87856 0.94799 1.51694 0.90878 1.18253 0.97500 0.83833 0.98107 1.23855 0.98321 0.97108 0.80199 1.70307 1.19595 1.03958 1.28744 1.22144 1.07026 0.96712 0.92546 1.22341 1.12669 0.90209 0.96650 1.45350 1.49519 1.11426 1.07237 1.21886 0.99336 1.00471 0.79650 1.21547 0.94434 0.98633 0.97542 1.21513 0.98144 1.00083 0.95314 1.21513 0.94759 0.98216 1.01129 1.21538 0.98029 0.98938 0.97070 1.21515 0.97476 0.99909 0.96675 1.21592 0.94238 0.97664 1.01626 0.92486 0.93346 0.95541 0.82555 0.82287 0.87882 0.90007 0.90225 0.91843 0.91190 0.92009 0.91874 0.92361 0.92179 0.92040 0.92278 0.91505 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 20.93 27.47 -169.99 -4.67 16.26 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 7 C -0.51 -14.58 9.65 -34.44 -0.33 -14.91 16 8 H 0.07 2.33 7.98 -52.49 -0.42 1.91 16 9 C 0.06 1.51 4.20 -29.03 -0.12 1.39 16 10 C 0.27 6.11 7.09 -155.41 -1.10 5.01 16 11 N -0.51 -11.88 11.25 -10.82 -0.12 -12.01 16 12 C -0.04 -0.69 11.87 -17.81 -0.21 -0.90 16 13 C -0.09 -1.47 10.28 -16.56 -0.17 -1.64 16 14 N -0.45 -8.46 2.47 -113.90 -0.28 -8.74 16 15 C 0.11 1.68 5.08 -4.04 -0.02 1.66 16 16 C -0.10 -1.35 2.40 -90.62 -0.22 -1.57 16 17 C -0.11 -1.26 5.20 -26.73 -0.14 -1.40 16 18 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 19 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 20 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 21 C -0.11 -1.33 4.95 -26.73 -0.13 -1.46 16 22 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.05 1.22 7.20 -51.93 -0.37 0.85 16 24 H 0.03 0.60 6.85 -51.93 -0.36 0.24 16 25 H 0.16 2.47 8.06 -52.49 -0.42 2.05 16 26 H 0.16 2.08 8.06 -52.48 -0.42 1.66 16 27 H 0.10 1.78 7.92 -51.92 -0.41 1.36 16 28 H 0.08 1.05 8.13 -51.93 -0.42 0.63 16 29 H 0.08 1.22 7.74 -51.93 -0.40 0.82 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.90 6.77 -51.93 -0.35 0.55 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 310.15 15.07 4.67 4.67 Total: -1.00 -31.86 310.15 -9.20 -41.05 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.55 Total: 0.97 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -3.02 Total: -15.81 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.37 Total: -47.14 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.86 -9.20 -41.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260553846.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.433 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds