Wall clock time and date at job start Mon Mar 30 2020 06:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99758 * 2 1 4 4 H 1.48502 * 109.47145 * 269.99988 * 3 2 1 5 5 H 1.48494 * 109.47099 * 30.00209 * 3 2 1 6 6 H 1.48506 * 109.46971 * 150.00123 * 3 2 1 7 7 C 1.37875 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00300 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99893 * 179.97438 * 7 2 1 10 10 C 1.50699 * 109.47248 * 180.02562 * 9 7 2 11 11 N 1.30501 * 125.64973 * 269.96506 * 10 9 7 12 12 C 1.34131 * 109.25498 * 180.02562 * 11 10 9 13 13 C 1.34666 * 108.02058 * 359.72600 * 12 11 10 14 14 N 1.35047 * 125.65153 * 89.99846 * 10 9 7 15 15 C 1.46500 * 126.39687 * 359.97031 * 14 10 9 16 16 C 1.53001 * 109.47094 * 84.99412 * 15 14 10 17 17 C 1.53000 * 109.46886 * 184.99933 * 16 15 14 18 18 C 1.52997 * 109.47060 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.47317 * 59.99960 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 H 0.96995 * 120.00130 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47316 * 60.00428 * 9 7 2 24 24 H 1.09001 * 109.47801 * 300.00242 * 9 7 2 25 25 H 1.07996 * 125.98865 * 180.02562 * 12 11 10 26 26 H 1.08008 * 126.59108 * 180.27992 * 13 12 11 27 27 H 1.09008 * 109.47071 * 324.99776 * 15 14 10 28 28 H 1.09000 * 109.47025 * 205.00018 * 15 14 10 29 29 H 1.08992 * 109.47514 * 305.00368 * 16 15 14 30 30 H 1.09002 * 109.47398 * 300.00496 * 17 16 15 31 31 H 1.09001 * 109.47194 * 60.00677 * 17 16 15 32 32 H 1.08996 * 109.47853 * 180.02562 * 18 17 16 33 33 H 1.09002 * 109.47153 * 300.00319 * 18 17 16 34 34 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 36 36 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 37 37 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 38 38 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 39 39 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0140 -2.6147 -0.0023 11 7 4.2686 -3.3323 1.0576 12 6 4.6978 -4.5451 0.6780 13 6 4.7038 -4.5824 -0.6681 14 7 4.2760 -3.3561 -1.1002 15 6 4.1243 -2.9297 -2.4936 16 6 5.3861 -2.1887 -2.9404 17 6 5.1798 -1.6355 -4.3519 18 6 6.4418 -0.8951 -4.7990 19 6 7.6276 -1.8620 -4.7985 20 6 7.8339 -2.4153 -3.3870 21 6 6.5718 -3.1557 -2.9398 22 1 -0.4850 0.8400 0.0004 23 1 3.8753 -0.6803 0.8889 24 1 3.8747 -0.6799 -0.8911 25 1 4.9834 -5.3520 1.3366 26 1 4.9932 -5.4184 -1.2877 27 1 3.2638 -2.2659 -2.5788 28 1 3.9728 -3.8039 -3.1266 29 1 5.5871 -1.3665 -2.2537 30 1 4.9788 -2.4578 -5.0387 31 1 4.3348 -0.9469 -4.3524 32 1 6.2948 -0.5006 -5.8044 33 1 6.6432 -0.0729 -4.1123 34 1 8.5268 -1.3344 -5.1166 35 1 7.4262 -2.6842 -5.4852 36 1 8.0352 -1.5930 -2.7003 37 1 8.6784 -3.1044 -3.3867 38 1 6.7190 -3.5502 -1.9345 39 1 6.3705 -3.9778 -3.6266 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260553846.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:53 Heat of formation + Delta-G solvation = 8.544863 kcal Electronic energy + Delta-G solvation = -18562.741659 eV Core-core repulsion = 15890.120845 eV Total energy + Delta-G solvation = -2672.620814 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.91784 -39.55194 -35.44922 -35.18997 -32.72302 -31.86412 -31.50552 -28.97509 -26.86938 -24.79719 -23.51659 -22.56446 -22.08661 -20.61425 -20.30008 -19.06053 -17.77931 -16.75684 -16.33586 -15.93366 -15.49805 -15.08160 -15.00617 -14.96317 -14.74820 -14.24311 -14.00299 -13.66024 -13.53136 -13.14432 -13.06561 -12.67666 -12.54064 -12.48255 -12.01928 -11.97883 -11.91813 -11.68510 -11.39647 -11.20462 -10.93528 -10.82548 -10.71860 -10.32701 -9.05112 -8.33354 -6.40108 1.30514 1.33591 1.38315 1.49620 2.06730 2.32486 2.38052 3.00195 3.60424 3.72848 3.80452 3.90622 4.02725 4.14217 4.32046 4.34039 4.42880 4.47108 4.58933 4.61662 4.62702 4.71788 4.78614 4.80252 4.88491 5.00640 5.14306 5.15042 5.23622 5.24272 5.28214 5.38232 5.43498 5.45972 5.56279 5.62124 6.04210 6.16012 6.45108 6.64659 7.22770 7.41856 8.83336 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.008015 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.885728 B = 3492.560046 C = 4536.523879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.017 3.983 3 Si 0.946 3.054 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.251 1.251 7 C -0.519 4.519 8 H 0.021 0.979 9 C 0.074 3.926 10 C 0.225 3.775 11 N -0.547 5.547 12 C -0.065 4.065 13 C -0.056 4.056 14 N -0.447 5.447 15 C 0.104 3.896 16 C -0.095 4.095 17 C -0.110 4.110 18 C -0.119 4.119 19 C -0.114 4.114 20 C -0.118 4.118 21 C -0.107 4.107 22 H 0.270 0.730 23 H 0.036 0.964 24 H 0.044 0.956 25 H 0.185 0.815 26 H 0.209 0.791 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.494 -4.984 -13.147 21.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.181 4.181 3 Si 0.768 3.232 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.175 1.175 7 C -0.558 4.558 8 H 0.039 0.961 9 C 0.035 3.965 10 C -0.038 4.038 11 N -0.267 5.267 12 C -0.212 4.212 13 C -0.189 4.189 14 N -0.128 5.128 15 C -0.018 4.018 16 C -0.115 4.115 17 C -0.148 4.148 18 C -0.156 4.156 19 C -0.151 4.151 20 C -0.155 4.155 21 C -0.145 4.145 22 H 0.079 0.921 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.202 0.798 26 H 0.226 0.774 27 H 0.094 0.906 28 H 0.133 0.867 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 16.239 -4.592 -12.497 20.999 hybrid contribution -0.406 0.360 -0.160 0.565 sum 15.834 -4.232 -12.657 20.708 Atomic orbital electron populations 1.70039 1.08256 1.28481 1.51542 1.25878 0.95591 1.03110 0.93535 0.85724 0.79423 0.78106 0.79940 1.17735 1.20553 1.17474 1.20891 0.90082 0.92959 1.51861 0.96108 1.17949 0.94555 0.85868 0.98083 1.23385 1.01485 0.97102 0.81823 1.70176 1.20338 1.05993 1.30146 1.22715 1.08002 0.96174 0.94313 1.23066 1.09216 0.90082 0.96528 1.45509 1.48169 1.11499 1.07653 1.22139 0.99590 1.01642 0.78383 1.21474 0.93978 0.97944 0.98063 1.21512 0.98443 1.00572 0.94257 1.21527 0.94528 0.98021 1.01555 1.21519 0.98019 0.99145 0.96418 1.21514 0.97240 0.99638 0.97128 1.21540 0.93979 0.97823 1.01155 0.92094 0.94550 0.93822 0.79828 0.77438 0.90603 0.86726 0.93068 0.89893 0.92391 0.90532 0.93130 0.91253 0.90854 0.93541 0.90909 0.93323 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.16 13.96 21.45 0.30 -58.86 16 2 C 0.02 0.99 5.47 84.65 0.46 1.45 16 3 Si 0.95 43.59 27.47 68.60 1.88 45.48 16 4 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 7 C -0.52 -30.92 9.65 25.60 0.25 -30.67 16 8 H 0.02 1.40 7.98 -2.91 -0.02 1.38 16 9 C 0.07 3.74 4.20 29.10 0.12 3.87 16 10 C 0.23 10.50 7.09 138.13 0.98 11.48 16 11 N -0.55 -26.08 11.25 -188.13 -2.12 -28.20 16 12 C -0.06 -2.41 11.87 83.52 0.99 -1.42 16 13 C -0.06 -1.77 10.28 83.09 0.85 -0.92 16 14 N -0.45 -16.38 2.47 -514.27 -1.27 -17.65 16 15 C 0.10 3.07 5.08 86.38 0.44 3.51 16 16 C -0.10 -2.37 2.40 -10.79 -0.03 -2.40 16 17 C -0.11 -2.22 5.20 30.59 0.16 -2.06 16 18 C -0.12 -2.09 5.92 30.59 0.18 -1.91 16 19 C -0.11 -1.72 5.92 30.60 0.18 -1.54 16 20 C -0.12 -2.13 5.92 30.60 0.18 -1.95 16 21 C -0.11 -2.21 4.95 30.59 0.15 -2.06 16 22 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 23 H 0.04 1.88 7.20 -2.39 -0.02 1.87 16 24 H 0.04 2.00 6.85 -2.39 -0.02 1.99 16 25 H 0.18 5.49 8.06 -2.91 -0.02 5.47 16 26 H 0.21 4.40 8.06 -2.91 -0.02 4.37 16 27 H 0.08 2.66 7.92 -2.38 -0.02 2.64 16 28 H 0.11 2.60 8.13 -2.39 -0.02 2.58 16 29 H 0.05 1.56 7.74 -2.39 -0.02 1.54 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 1.18 6.77 -2.39 -0.02 1.17 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -73.01 310.15 4.66 -68.35 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.94 Total: 15.49 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: 4.92 Total: -24.61 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -3.09 Total: -104.71 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.48 kcal Total: -73.01 4.66 -68.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260553846.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.894 kcal (2) G-P(sol) polarization free energy of solvation -73.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds