Wall clock time and date at job start Mon Mar 30 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35895 * 116.99989 * 2 1 4 4 C 1.38753 * 120.05565 * 89.20235 * 3 2 1 5 5 C 1.50700 * 120.02820 * 359.94744 * 4 3 2 6 6 C 1.50695 * 109.47074 * 85.02548 * 5 4 3 7 7 H 1.08002 * 119.99989 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00382 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99647 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00248 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47497 * 60.00026 * 10 8 6 12 12 H 1.48505 * 109.46822 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46788 * 299.99676 * 10 8 6 14 14 C 1.38126 * 119.94907 * 179.97438 * 4 3 2 15 15 C 1.38289 * 120.04713 * 0.02562 * 14 4 3 16 16 C 1.38237 * 120.11605 * 0.25907 * 15 14 4 17 17 C 1.38165 * 120.05392 * 359.44129 * 16 15 14 18 18 C 1.50712 * 120.02762 * 180.25460 * 17 16 15 19 19 C 1.53001 * 109.47066 * 27.05025 * 18 17 16 20 20 C 1.52994 * 109.46967 * 147.04764 * 18 17 16 21 21 C 1.52996 * 109.46978 * 267.04858 * 18 17 16 22 22 H 1.08997 * 109.47148 * 300.34658 * 1 2 3 23 23 H 1.09003 * 109.46618 * 60.34229 * 1 2 3 24 24 H 1.08994 * 109.47551 * 180.34202 * 1 2 3 25 25 H 1.09001 * 109.47288 * 205.02894 * 5 4 3 26 26 H 1.09008 * 109.47213 * 325.02834 * 5 4 3 27 27 H 0.97003 * 120.00064 * 179.97438 * 9 8 6 28 28 H 1.07994 * 119.97997 * 179.97438 * 14 4 3 29 29 H 1.08003 * 119.93781 * 179.97438 * 15 14 4 30 30 H 1.08005 * 119.97204 * 179.72910 * 16 15 14 31 31 H 1.08997 * 109.47120 * 59.99574 * 19 18 17 32 32 H 1.08994 * 109.47145 * 180.02562 * 19 18 17 33 33 H 1.08998 * 109.47139 * 300.00088 * 19 18 17 34 34 H 1.09004 * 109.47469 * 76.77719 * 20 18 17 35 35 H 1.08997 * 109.47394 * 196.77771 * 20 18 17 36 36 H 1.09006 * 109.47702 * 316.78039 * 20 18 17 37 37 H 1.09003 * 109.47157 * 54.86418 * 21 18 17 38 38 H 1.09005 * 109.46693 * 174.86244 * 21 18 17 39 39 H 1.08996 * 109.47314 * 294.85874 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 2.3466 1.8376 1.2008 5 6 1.9881 1.1767 2.5069 6 6 3.0814 0.2174 2.9011 7 1 3.9492 0.0985 2.2694 8 6 2.9738 -0.5085 4.0684 9 7 1.9168 -0.3641 4.8375 10 14 4.3293 -1.6971 4.5574 11 1 5.6061 -0.9551 4.7130 12 1 3.9754 -2.3494 5.8438 13 1 4.4836 -2.7324 3.5041 14 6 2.9742 3.0681 1.1983 15 6 3.3024 3.6755 0.0001 16 6 2.9987 3.0558 -1.1977 17 6 2.3766 1.8222 -1.2004 18 6 2.0510 1.1445 -2.5066 19 6 3.0342 1.6109 -3.5821 20 6 2.1629 -0.3718 -2.3362 21 6 0.6253 1.5066 -2.9274 22 1 -0.3633 0.5192 0.8868 23 1 -0.3633 0.5085 -0.8931 24 1 -0.3634 -1.0276 0.0061 25 1 1.8755 1.9369 3.2799 26 1 1.0506 0.6323 2.3934 27 1 1.8409 -0.8751 5.6585 28 1 3.2080 3.5565 2.1326 29 1 3.7927 4.6378 0.0001 30 1 3.2522 3.5343 -2.1322 31 1 4.0499 1.3530 -3.2822 32 1 2.7984 1.1211 -4.5268 33 1 2.9545 2.6911 -3.7034 34 1 1.2849 -0.7440 -1.8083 35 1 2.2246 -0.8440 -3.3166 36 1 3.0591 -0.6078 -1.7623 37 1 0.5204 2.5910 -2.9602 38 1 0.4215 1.0918 -3.9146 39 1 -0.0818 1.0948 -2.2073 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260573012.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:38 Heat of formation + Delta-G solvation = -24.668607 kcal Electronic energy + Delta-G solvation = -18908.134549 eV Core-core repulsion = 16201.780740 eV Total energy + Delta-G solvation = -2706.353809 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.06555 -36.65566 -36.21573 -33.14335 -30.84005 -29.33785 -27.59900 -27.31152 -26.63177 -25.85692 -23.15861 -22.14895 -20.53618 -18.58728 -17.07246 -16.24599 -15.76268 -15.19024 -14.87516 -14.46070 -14.07753 -13.92423 -13.55590 -13.07875 -12.90400 -12.31947 -12.26117 -11.95032 -11.76248 -11.68229 -11.37517 -11.32949 -11.19657 -10.90013 -10.67206 -10.57343 -10.52254 -10.28079 -10.16440 -9.62111 -9.39231 -8.87321 -8.34477 -7.96312 -7.70675 -5.97659 -3.99026 1.86749 2.07076 3.36942 3.39884 3.44415 4.14559 4.49268 4.64980 4.89240 5.01123 5.23620 5.37385 5.44913 5.54703 5.60593 5.69051 5.72745 5.84079 5.86818 5.93246 6.02533 6.07303 6.08673 6.14775 6.24933 6.31563 6.38162 6.46597 6.57872 6.73357 6.80405 6.97406 7.14155 7.21091 7.43074 7.59836 7.82963 7.98143 8.28101 8.41787 9.03801 9.63082 11.12749 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.025663 B = 0.007103 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.791557 B = 3941.058796 C = 4226.779971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.094 3.906 4 C -0.053 4.053 5 C 0.055 3.945 6 C -0.498 4.498 7 H 0.055 0.945 8 C 0.058 3.942 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.276 1.276 14 C -0.121 4.121 15 C -0.127 4.127 16 C -0.138 4.138 17 C -0.095 4.095 18 C -0.023 4.023 19 C -0.138 4.138 20 C -0.137 4.137 21 C -0.145 4.145 22 H 0.047 0.953 23 H 0.044 0.956 24 H 0.085 0.915 25 H 0.025 0.975 26 H 0.031 0.969 27 H 0.261 0.739 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.003 4.652 -14.210 15.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.051 3.949 4 C -0.053 4.053 5 C 0.018 3.982 6 C -0.536 4.536 7 H 0.073 0.927 8 C -0.143 4.143 9 N -0.538 5.538 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 C -0.139 4.139 15 C -0.145 4.145 16 C -0.156 4.156 17 C -0.095 4.095 18 C -0.023 4.023 19 C -0.195 4.195 20 C -0.194 4.194 21 C -0.202 4.202 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.103 0.897 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.137 0.863 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.003 4.403 -14.042 14.852 hybrid contribution 0.681 -0.449 0.456 0.935 sum -1.322 3.954 -13.586 14.211 Atomic orbital electron populations 1.23082 0.80890 1.02532 1.00246 1.86174 1.18340 1.24665 1.93822 1.18333 0.98889 0.86618 0.91102 1.21049 0.94351 0.92731 0.97179 1.18250 0.97628 0.95147 0.87164 1.20934 1.04553 1.22330 1.05807 0.92703 1.24960 0.95856 0.97044 0.96414 1.69943 1.28214 1.41946 1.13669 0.86617 0.82229 0.81326 0.77643 1.20278 1.21309 1.20159 1.20997 0.99674 0.95573 0.97650 1.21026 1.01060 0.99739 0.92692 1.20717 1.02153 0.95146 0.97622 1.20032 1.01047 0.94740 0.93687 1.19376 0.95147 0.95923 0.91850 1.21933 0.99264 1.00769 0.97566 1.22074 1.04121 0.93215 0.99956 1.22123 0.95836 1.01235 1.00968 0.93469 0.93759 0.89666 0.95722 0.95054 0.92949 0.86264 0.86954 0.86591 0.92484 0.92885 0.92651 0.90598 0.94208 0.92269 0.92881 0.92732 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.57 101.05 0.97 1.41 16 2 O -0.31 -6.38 6.53 -19.41 -0.13 -6.50 16 3 C 0.09 1.92 5.38 -39.22 -0.21 1.71 16 4 C -0.05 -1.18 5.08 -104.47 -0.53 -1.71 16 5 C 0.05 1.44 4.83 -29.04 -0.14 1.30 16 6 C -0.50 -14.37 9.09 -34.44 -0.31 -14.69 16 7 H 0.05 1.60 7.74 -52.49 -0.41 1.20 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 10 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C -0.12 -2.39 9.68 -39.60 -0.38 -2.77 16 15 C -0.13 -2.12 10.04 -39.56 -0.40 -2.52 16 16 C -0.14 -2.22 9.13 -39.61 -0.36 -2.58 16 17 C -0.09 -1.63 4.68 -104.47 -0.49 -2.12 16 18 C -0.02 -0.33 0.86 -155.66 -0.13 -0.46 16 19 C -0.14 -1.67 7.62 37.16 0.28 -1.39 16 20 C -0.14 -2.05 7.21 37.15 0.27 -1.78 16 21 C -0.14 -1.80 8.42 37.16 0.31 -1.48 16 22 H 0.05 0.84 7.10 -51.93 -0.37 0.47 16 23 H 0.04 0.63 4.59 -51.93 -0.24 0.39 16 24 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.02 0.68 8.05 -51.93 -0.42 0.26 16 26 H 0.03 0.86 6.34 -51.92 -0.33 0.53 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 29 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 30 H 0.12 1.54 6.09 -52.48 -0.32 1.22 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.61 6.54 -51.93 -0.34 0.27 16 34 H 0.08 1.17 4.95 -51.93 -0.26 0.92 16 35 H 0.04 0.51 8.03 -51.93 -0.42 0.09 16 36 H 0.06 1.02 7.80 -51.93 -0.40 0.62 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.81 4.53 -51.93 -0.24 0.58 16 LS Contribution 304.64 15.07 4.59 4.59 Total: -1.00 -30.74 304.64 -6.88 -37.61 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.83 Total: -1.17 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: -1.23 Total: -25.51 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.19 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.13 Total: -6.50 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.74 -6.88 -37.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260573012.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.942 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds