Wall clock time and date at job start Mon Mar 30 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35895 * 116.99989 * 2 1 4 4 C 1.38753 * 120.05565 * 89.20235 * 3 2 1 5 5 C 1.50700 * 120.02820 * 359.94744 * 4 3 2 6 6 C 1.50695 * 109.47074 * 85.02548 * 5 4 3 7 7 H 1.08002 * 119.99989 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00382 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99647 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00248 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47497 * 60.00026 * 10 8 6 12 12 H 1.48505 * 109.46822 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46788 * 299.99676 * 10 8 6 14 14 C 1.38126 * 119.94907 * 179.97438 * 4 3 2 15 15 C 1.38289 * 120.04713 * 0.02562 * 14 4 3 16 16 C 1.38237 * 120.11605 * 0.25907 * 15 14 4 17 17 C 1.38165 * 120.05392 * 359.44129 * 16 15 14 18 18 C 1.50712 * 120.02762 * 180.25460 * 17 16 15 19 19 C 1.53001 * 109.47066 * 27.05025 * 18 17 16 20 20 C 1.52994 * 109.46967 * 147.04764 * 18 17 16 21 21 C 1.52996 * 109.46978 * 267.04858 * 18 17 16 22 22 H 1.08997 * 109.47148 * 300.34658 * 1 2 3 23 23 H 1.09003 * 109.46618 * 60.34229 * 1 2 3 24 24 H 1.08994 * 109.47551 * 180.34202 * 1 2 3 25 25 H 1.09001 * 109.47288 * 205.02894 * 5 4 3 26 26 H 1.09008 * 109.47213 * 325.02834 * 5 4 3 27 27 H 0.97003 * 120.00064 * 179.97438 * 9 8 6 28 28 H 1.07994 * 119.97997 * 179.97438 * 14 4 3 29 29 H 1.08003 * 119.93781 * 179.97438 * 15 14 4 30 30 H 1.08005 * 119.97204 * 179.72910 * 16 15 14 31 31 H 1.08997 * 109.47120 * 59.99574 * 19 18 17 32 32 H 1.08994 * 109.47145 * 180.02562 * 19 18 17 33 33 H 1.08998 * 109.47139 * 300.00088 * 19 18 17 34 34 H 1.09004 * 109.47469 * 76.77719 * 20 18 17 35 35 H 1.08997 * 109.47394 * 196.77771 * 20 18 17 36 36 H 1.09006 * 109.47702 * 316.78039 * 20 18 17 37 37 H 1.09003 * 109.47157 * 54.86418 * 21 18 17 38 38 H 1.09005 * 109.46693 * 174.86244 * 21 18 17 39 39 H 1.08996 * 109.47314 * 294.85874 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 2.3466 1.8376 1.2008 5 6 1.9881 1.1767 2.5069 6 6 3.0814 0.2174 2.9011 7 1 3.9492 0.0985 2.2694 8 6 2.9738 -0.5085 4.0684 9 7 1.9168 -0.3641 4.8375 10 14 4.3293 -1.6971 4.5574 11 1 5.6061 -0.9551 4.7130 12 1 3.9754 -2.3494 5.8438 13 1 4.4836 -2.7324 3.5041 14 6 2.9742 3.0681 1.1983 15 6 3.3024 3.6755 0.0001 16 6 2.9987 3.0558 -1.1977 17 6 2.3766 1.8222 -1.2004 18 6 2.0510 1.1445 -2.5066 19 6 3.0342 1.6109 -3.5821 20 6 2.1629 -0.3718 -2.3362 21 6 0.6253 1.5066 -2.9274 22 1 -0.3633 0.5192 0.8868 23 1 -0.3633 0.5085 -0.8931 24 1 -0.3634 -1.0276 0.0061 25 1 1.8755 1.9369 3.2799 26 1 1.0506 0.6323 2.3934 27 1 1.8409 -0.8751 5.6585 28 1 3.2080 3.5565 2.1326 29 1 3.7927 4.6378 0.0001 30 1 3.2522 3.5343 -2.1322 31 1 4.0499 1.3530 -3.2822 32 1 2.7984 1.1211 -4.5268 33 1 2.9545 2.6911 -3.7034 34 1 1.2849 -0.7440 -1.8083 35 1 2.2246 -0.8440 -3.3166 36 1 3.0591 -0.6078 -1.7623 37 1 0.5204 2.5910 -2.9602 38 1 0.4215 1.0918 -3.9146 39 1 -0.0818 1.0948 -2.2073 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260573012.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:38 Heat of formation + Delta-G solvation = -41.380545 kcal Electronic energy + Delta-G solvation = -18908.859233 eV Core-core repulsion = 16201.780740 eV Total energy + Delta-G solvation = -2707.078493 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.46069 -38.08141 -37.51772 -35.21400 -32.62561 -30.71595 -29.15813 -28.38177 -27.94479 -27.29501 -25.08885 -23.55641 -22.05344 -19.87330 -18.59597 -18.40288 -17.20455 -16.67433 -16.34960 -16.26197 -15.31839 -15.12533 -14.78007 -14.54379 -14.39626 -14.13864 -13.60759 -13.36769 -13.18915 -13.01939 -12.88376 -12.73151 -12.57525 -12.50114 -12.44805 -12.27329 -11.75373 -11.58544 -11.49972 -11.44254 -11.28553 -10.61082 -10.32103 -9.39782 -9.25955 -8.20140 -6.31162 0.44847 0.59510 1.35509 1.38960 1.46972 2.38448 2.74339 3.10406 3.20073 3.73212 3.89253 4.15809 4.24531 4.29336 4.36807 4.44618 4.51236 4.58499 4.71315 4.74172 4.83767 4.87347 4.93110 5.00060 5.07091 5.11608 5.17223 5.28327 5.30032 5.36861 5.39981 5.52459 5.57357 5.67467 5.72336 5.82207 5.99169 6.06113 6.18949 6.77863 6.84519 7.35394 8.89284 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.025663 B = 0.007103 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.791557 B = 3941.058796 C = 4226.779971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.336 6.336 3 C 0.078 3.922 4 C -0.095 4.095 5 C 0.068 3.932 6 C -0.516 4.516 7 H 0.044 0.956 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.961 3.039 11 H -0.268 1.268 12 H -0.277 1.277 13 H -0.272 1.272 14 C -0.137 4.137 15 C -0.118 4.118 16 C -0.126 4.126 17 C -0.094 4.094 18 C -0.024 4.024 19 C -0.135 4.135 20 C -0.134 4.134 21 C -0.142 4.142 22 H 0.023 0.977 23 H 0.073 0.927 24 H 0.100 0.900 25 H -0.004 1.004 26 H 0.006 0.994 27 H 0.265 0.735 28 H 0.114 0.886 29 H 0.151 0.849 30 H 0.157 0.843 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.026 0.974 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.062 5.293 -17.100 17.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.253 6.253 3 C 0.035 3.965 4 C -0.095 4.095 5 C 0.031 3.969 6 C -0.554 4.554 7 H 0.062 0.938 8 C -0.192 4.192 9 N -0.571 5.571 10 Si 0.785 3.215 11 H -0.193 1.193 12 H -0.202 1.202 13 H -0.197 1.197 14 C -0.155 4.155 15 C -0.136 4.136 16 C -0.144 4.144 17 C -0.095 4.095 18 C -0.024 4.024 19 C -0.192 4.192 20 C -0.191 4.191 21 C -0.198 4.198 22 H 0.042 0.958 23 H 0.091 0.909 24 H 0.119 0.881 25 H 0.015 0.985 26 H 0.024 0.976 27 H 0.074 0.926 28 H 0.132 0.868 29 H 0.168 0.832 30 H 0.174 0.826 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.064 5.052 -16.937 17.706 hybrid contribution 0.351 -0.617 1.294 1.476 sum -0.713 4.435 -15.643 16.275 Atomic orbital electron populations 1.23227 0.79470 1.03656 1.00503 1.86121 1.19952 1.25243 1.93983 1.18542 0.99515 0.86765 0.91655 1.20855 0.97924 0.94638 0.96083 1.17909 0.95988 0.93934 0.89027 1.21206 1.04908 1.23250 1.06067 0.93755 1.25844 0.98309 0.98743 0.96273 1.70062 1.30021 1.42909 1.14094 0.85566 0.79343 0.78976 0.77585 1.19267 1.20155 1.19716 1.21074 1.00296 0.94984 0.99175 1.21382 0.99894 1.00819 0.91470 1.21215 0.99910 0.94323 0.98947 1.20421 0.99980 0.95151 0.93910 1.19487 0.97172 0.94840 0.90929 1.21923 0.97878 1.02027 0.97396 1.22023 1.02100 0.94433 1.00581 1.22090 0.93983 1.01863 1.01878 0.95835 0.90867 0.88149 0.98548 0.97613 0.92643 0.86825 0.83174 0.82601 0.93389 0.90805 0.90957 0.91573 0.91756 0.95424 0.92070 0.90316 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.85 9.57 113.37 1.09 1.94 16 2 O -0.34 -14.16 6.53 -92.37 -0.60 -14.76 16 3 C 0.08 3.27 5.38 22.50 0.12 3.39 16 4 C -0.09 -4.44 5.08 -19.77 -0.10 -4.54 16 5 C 0.07 3.86 4.83 29.10 0.14 4.00 16 6 C -0.52 -31.27 9.09 25.60 0.23 -31.03 16 7 H 0.04 2.70 7.74 -2.91 -0.02 2.68 16 8 C 0.01 0.36 5.46 84.66 0.46 0.82 16 9 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 10 Si 0.96 46.44 29.54 68.60 2.03 48.47 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 14 C -0.14 -5.52 9.68 22.26 0.22 -5.31 16 15 C -0.12 -3.66 10.04 22.28 0.22 -3.44 16 16 C -0.13 -3.63 9.13 22.25 0.20 -3.42 16 17 C -0.09 -3.09 4.68 -19.77 -0.09 -3.19 16 18 C -0.02 -0.62 0.86 -52.93 -0.05 -0.67 16 19 C -0.14 -2.67 7.62 71.98 0.55 -2.12 16 20 C -0.13 -3.84 7.21 71.98 0.52 -3.32 16 21 C -0.14 -3.00 8.42 71.98 0.61 -2.40 16 22 H 0.02 0.89 7.10 -2.39 -0.02 0.87 16 23 H 0.07 2.05 4.59 -2.39 -0.01 2.04 16 24 H 0.10 3.02 8.14 -2.39 -0.02 3.01 16 25 H 0.00 -0.23 8.05 -2.39 -0.02 -0.25 16 26 H 0.01 0.34 6.34 -2.38 -0.02 0.33 16 27 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 28 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 29 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 30 H 0.16 3.26 6.09 -2.91 -0.02 3.24 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.19 6.54 -2.39 -0.02 1.17 16 34 H 0.07 2.00 4.95 -2.38 -0.01 1.98 16 35 H 0.06 1.48 8.03 -2.39 -0.02 1.46 16 36 H 0.03 0.94 7.80 -2.38 -0.02 0.92 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.05 1.23 4.53 -2.39 -0.01 1.22 16 Total: -1.00 -70.04 304.64 6.86 -63.18 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 1.03 Total: 9.98 kcal Atomic # 6 Polarization: -53.41 SS G_CDS: 4.12 Total: -49.29 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.28 Total: -57.58 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.60 Total: -14.76 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -70.04 6.86 -63.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260573012.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.804 kcal (2) G-P(sol) polarization free energy of solvation -70.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds