Wall clock time and date at job start Mon Mar 30 2020 06:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.46878 * 2 1 4 4 C 1.35897 * 116.99817 * 179.97438 * 3 2 1 5 5 C 1.38754 * 120.05719 * 359.95522 * 4 3 2 6 6 C 1.38122 * 119.94946 * 180.02562 * 5 4 3 7 7 C 1.38295 * 120.05026 * 0.02562 * 6 5 4 8 8 C 1.38242 * 120.11401 * 0.02562 * 7 6 5 9 9 C 1.38169 * 120.05494 * 359.94904 * 8 7 6 10 10 C 1.50694 * 120.02852 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47698 * 265.00579 * 10 9 8 12 12 C 1.52991 * 109.47526 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.47083 * 54.99862 * 12 11 10 14 14 C 1.53003 * 109.47277 * 295.00403 * 12 11 10 15 15 C 1.50700 * 109.47625 * 174.99998 * 12 11 10 16 16 H 1.08001 * 119.99164 * 0.02562 * 15 12 11 17 17 C 1.37871 * 120.00326 * 179.97438 * 15 12 11 18 18 N 1.31520 * 120.00156 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00105 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47320 * 60.00068 * 19 17 15 21 21 H 1.48500 * 109.47445 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47005 * 300.00255 * 19 17 15 23 23 H 1.09001 * 109.47321 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47403 * 300.00676 * 1 2 3 25 25 H 1.09000 * 109.46853 * 60.00435 * 1 2 3 26 26 H 1.08995 * 109.47403 * 239.99324 * 2 1 3 27 27 H 1.09000 * 109.46853 * 119.99565 * 2 1 3 28 28 H 1.08002 * 120.02758 * 0.04150 * 5 4 3 29 29 H 1.07997 * 119.97891 * 180.29657 * 6 5 4 30 30 H 1.07997 * 119.93892 * 179.97438 * 7 6 5 31 31 H 1.07998 * 119.97158 * 179.97438 * 8 7 6 32 32 H 1.09004 * 109.47092 * 25.00582 * 10 9 8 33 33 H 1.09006 * 109.47197 * 145.00350 * 10 9 8 34 34 H 1.08995 * 109.47074 * 300.00157 * 11 10 9 35 35 H 1.09006 * 109.46984 * 59.99640 * 11 10 9 36 36 H 1.09007 * 109.47055 * 299.99564 * 14 12 11 37 37 H 1.08996 * 109.47452 * 59.99369 * 14 12 11 38 38 H 1.08997 * 109.47345 * 179.97438 * 14 12 11 39 39 H 0.96998 * 120.00087 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5254 0.0005 5 6 4.1999 0.4259 0.0020 6 6 5.5689 0.6094 0.0031 7 6 6.0961 1.8879 0.0032 8 6 5.2551 2.9851 0.0029 9 6 3.8850 2.8067 0.0013 10 6 2.9687 4.0031 0.0003 11 6 2.5572 4.3316 1.4367 12 6 1.6275 5.5467 1.4357 13 1 0.7823 5.3569 0.7741 14 6 2.3946 6.7755 0.9433 15 6 1.1245 5.7957 2.8343 16 1 1.4372 5.1518 3.6431 17 6 0.2662 6.8459 3.0816 18 7 -0.1141 7.6302 2.0967 19 14 -0.3566 7.1549 4.8153 20 1 0.7951 7.4132 5.7164 21 1 -1.2591 8.3342 4.8144 22 1 -1.1015 5.9625 5.2936 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.7886 -0.5728 0.0020 29 1 6.2280 -0.2460 -0.0006 30 1 7.1668 2.0294 0.0045 31 1 5.6694 3.9824 0.0034 32 1 3.4878 4.8579 -0.4335 33 1 2.0801 3.7797 -0.5902 34 1 2.0382 3.4770 1.8705 35 1 3.4458 4.5550 2.0272 36 1 3.2399 6.9654 1.6050 37 1 2.7584 6.5955 -0.0682 38 1 1.7321 7.6410 0.9422 39 1 -0.7177 8.3693 2.2707 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260887452.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:16 Heat of formation + Delta-G solvation = -40.748660 kcal Electronic energy + Delta-G solvation = -17946.363089 eV Core-core repulsion = 15239.311996 eV Total energy + Delta-G solvation = -2707.051093 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.07650 -37.41160 -35.45703 -32.85089 -31.69690 -30.68697 -29.46762 -27.13150 -25.13460 -23.98923 -23.26313 -21.49934 -20.77647 -18.96350 -17.93113 -16.18096 -15.98527 -15.82659 -15.41010 -14.52925 -14.28827 -13.69025 -13.39268 -13.17269 -13.11186 -12.55956 -12.43384 -12.23534 -11.85758 -11.65239 -11.56426 -11.23159 -10.90667 -10.82715 -10.68415 -10.60006 -10.42276 -10.20051 -10.00972 -9.40384 -9.12891 -8.70741 -8.52793 -8.21376 -7.84809 -5.87331 -3.93090 1.51545 1.63566 3.36746 3.37764 3.41839 3.44917 3.95413 4.52256 4.87110 4.93049 4.96365 5.09999 5.20170 5.24508 5.42708 5.46615 5.50675 5.64328 5.82018 5.87167 5.96364 6.09821 6.14108 6.29838 6.48988 6.55258 6.61649 6.69084 6.93179 6.95813 6.99006 7.10713 7.23088 7.36977 7.57167 7.64411 7.84948 8.14422 8.30102 8.59811 9.11015 9.70827 11.18443 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.021762 B = 0.005585 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.353911 B = 5012.669728 C = 5745.489904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.303 6.303 4 C 0.130 3.870 5 C -0.211 4.211 6 C -0.097 4.097 7 C -0.158 4.158 8 C -0.084 4.084 9 C -0.095 4.095 10 C -0.076 4.076 11 C -0.094 4.094 12 C 0.043 3.957 13 H 0.024 0.976 14 C -0.137 4.137 15 C -0.509 4.509 16 H 0.052 0.948 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.043 0.957 36 H 0.022 0.978 37 H 0.008 0.992 38 H 0.078 0.922 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.497 -14.549 -5.985 17.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.217 6.217 4 C 0.084 3.916 5 C -0.230 4.230 6 C -0.115 4.115 7 C -0.177 4.177 8 C -0.102 4.102 9 C -0.096 4.096 10 C -0.113 4.113 11 C -0.131 4.131 12 C 0.024 3.976 13 H 0.042 0.958 14 C -0.194 4.194 15 C -0.547 4.547 16 H 0.070 0.930 17 C -0.141 4.141 18 N -0.532 5.532 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.204 1.204 23 H 0.092 0.908 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.140 0.860 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.041 0.959 37 H 0.027 0.973 38 H 0.097 0.903 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.206 -14.249 -6.017 17.064 hybrid contribution -0.204 -0.113 1.016 1.042 sum 7.002 -14.362 -5.001 16.742 Atomic orbital electron populations 1.21769 0.92758 1.02398 1.04096 1.22728 0.96015 0.82478 1.00753 1.86189 1.18812 1.28399 1.88289 1.18868 0.82412 0.93603 0.96705 1.21162 0.94453 0.97676 1.09736 1.20803 0.94192 0.97089 0.99447 1.20987 0.99509 0.92559 1.04611 1.20950 0.91936 0.99107 0.98252 1.19640 0.94415 0.93092 1.02455 1.20658 0.97421 0.93094 1.00152 1.21587 0.99332 0.99729 0.92487 1.18658 0.92886 0.89701 0.96331 0.95751 1.21836 0.99261 1.02923 0.95411 1.21201 1.26870 1.12557 0.94071 0.92995 1.24959 0.96347 0.96162 0.96626 1.69889 1.34617 1.17808 1.30862 0.86725 0.78724 0.77537 0.85374 1.20398 1.21374 1.20405 0.90770 0.91049 0.91463 0.92572 0.92384 0.86021 0.86427 0.86351 0.85466 0.91353 0.91258 0.93400 0.93797 0.95878 0.97288 0.90289 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 37.16 0.38 -1.25 16 2 C 0.06 0.66 5.46 37.16 0.20 0.86 16 3 O -0.30 -4.94 9.27 -19.42 -0.18 -5.12 16 4 C 0.13 2.09 6.66 -39.22 -0.26 1.83 16 5 C -0.21 -2.84 9.04 -39.43 -0.36 -3.20 16 6 C -0.10 -1.20 10.04 -39.60 -0.40 -1.60 16 7 C -0.16 -2.03 10.04 -39.56 -0.40 -2.43 16 8 C -0.08 -1.25 9.68 -39.61 -0.38 -1.63 16 9 C -0.10 -1.62 5.15 -104.48 -0.54 -2.15 16 10 C -0.08 -1.44 4.82 -27.89 -0.13 -1.58 16 11 C -0.09 -2.08 4.60 -26.74 -0.12 -2.20 16 12 C 0.04 1.11 2.30 -91.77 -0.21 0.90 16 13 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 14 C -0.14 -3.41 8.72 37.16 0.32 -3.08 16 15 C -0.51 -14.55 8.56 -34.44 -0.29 -14.84 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -26.33 11.32 55.43 0.63 -25.70 16 19 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 27 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 28 H 0.12 1.34 6.30 -52.49 -0.33 1.01 16 29 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 30 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.07 1.25 6.47 -51.93 -0.34 0.91 16 33 H 0.07 1.36 7.69 -51.93 -0.40 0.96 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.01 0.18 6.56 -51.93 -0.34 -0.16 16 38 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 317.76 15.07 4.79 4.79 Total: -1.00 -30.68 317.76 -8.35 -39.03 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -6.29 Total: -1.12 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: -2.28 Total: -28.76 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.63 Total: -25.70 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.18 Total: -5.12 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.68 -8.35 -39.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260887452.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.719 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds